CVS commit: pkgsrc/biology/py-dna-features-viewer

["Thomas Klausner" <wiz%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   wiz
Date:           Wed Feb 18 08:46:07 UTC 2026

Modified Files:
        pkgsrc/biology/py-dna-features-viewer: Makefile PLIST distinfo

Log Message:
py-dna_features_viewer: update to 3.1.5.

v3.1.5

    Exclude unwanted folders (#94)

v3.1.4

    Automated publishing to PyPI
    Automated documentation generation
    Switched to TOML package description
    No changes in functionality


To generate a diff of this commit:
cvs rdiff -u -r1.6 -r1.7 pkgsrc/biology/py-dna-features-viewer/Makefile
cvs rdiff -u -r1.1 -r1.2 pkgsrc/biology/py-dna-features-viewer/PLIST \
    pkgsrc/biology/py-dna-features-viewer/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/py-dna-features-viewer/Makefile
diff -u pkgsrc/biology/py-dna-features-viewer/Makefile:1.6 pkgsrc/biology/py-dna-features-viewer/Makefile:1.7
--- pkgsrc/biology/py-dna-features-viewer/Makefile:1.6  Thu Oct  9 07:57:24 2025
+++ pkgsrc/biology/py-dna-features-viewer/Makefile      Wed Feb 18 08:46:07 2026
@@ -1,21 +1,26 @@
-# $NetBSD: Makefile,v 1.6 2025/10/09 07:57:24 wiz Exp $
+# $NetBSD: Makefile,v 1.7 2026/02/18 08:46:07 wiz Exp $
 
-DISTNAME=      dna_features_viewer-3.1.3
-PKGNAME=       ${PYPKGPREFIX}-dna-features-viewer-3.1.3
+DISTNAME=      dna_features_viewer-3.1.5
+PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
 CATEGORIES=    biology
 MASTER_SITES=  ${MASTER_SITE_PYPI:=d/dna-features-viewer/}
 
 MAINTAINER=    bacon%NetBSD.org@localhost
-HOMEPAGE=      https://pypi.python.org/project/dna-features-viewer/
+HOMEPAGE=      https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer
 COMMENT=       Python library to visualize DNA features, e.g. GenBank or Gff files
 LICENSE=       mit
 
+TOOL_DEPENDS+= ${PYPKGPREFIX}-setuptools>=0:../../devel/py-setuptools
 DEPENDS+=      ${PYPKGPREFIX}-matplotlib>=3:../../graphics/py-matplotlib
 DEPENDS+=      ${PYPKGPREFIX}-biopython>0:../../biology/py-biopython
 DEPENDS+=      ${PYPKGPREFIX}-bcbio-gff>0:../../biology/py-bcbio-gff
 DEPENDS+=      ${PYPKGPREFIX}-packaging>0:../../devel/py-packaging
+#TEST_DEPENDS+=        ${PYPKGPREFIX}-bokeh>=0:../../wip/py-bokeh
 
 PYTHON_VERSIONS_INCOMPATIBLE=  310
 
-.include "../../lang/python/egg.mk"
+# 12 failed, 8 passed
+# due to missing test data
+
+.include "../../lang/python/wheel.mk"
 .include "../../mk/bsd.pkg.mk"

Index: pkgsrc/biology/py-dna-features-viewer/PLIST
diff -u pkgsrc/biology/py-dna-features-viewer/PLIST:1.1 pkgsrc/biology/py-dna-features-viewer/PLIST:1.2
--- pkgsrc/biology/py-dna-features-viewer/PLIST:1.1     Sun Nov  5 17:54:43 2023
+++ pkgsrc/biology/py-dna-features-viewer/PLIST Wed Feb 18 08:46:07 2026
@@ -1,9 +1,9 @@
-@comment $NetBSD: PLIST,v 1.1 2023/11/05 17:54:43 bacon Exp $
-${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
-${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
-${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
-${PYSITELIB}/${EGG_INFODIR}/requires.txt
-${PYSITELIB}/${EGG_INFODIR}/top_level.txt
+@comment $NetBSD: PLIST,v 1.2 2026/02/18 08:46:07 wiz Exp $
+${PYSITELIB}/${WHEEL_INFODIR}/METADATA
+${PYSITELIB}/${WHEEL_INFODIR}/RECORD
+${PYSITELIB}/${WHEEL_INFODIR}/WHEEL
+${PYSITELIB}/${WHEEL_INFODIR}/licenses/LICENSE
+${PYSITELIB}/${WHEEL_INFODIR}/top_level.txt
 ${PYSITELIB}/dna_features_viewer/BiopythonTranslator/BiopythonTranslator.py
 ${PYSITELIB}/dna_features_viewer/BiopythonTranslator/BiopythonTranslator.pyc
 ${PYSITELIB}/dna_features_viewer/BiopythonTranslator/BiopythonTranslator.pyo
Index: pkgsrc/biology/py-dna-features-viewer/distinfo
diff -u pkgsrc/biology/py-dna-features-viewer/distinfo:1.1 pkgsrc/biology/py-dna-features-viewer/distinfo:1.2
--- pkgsrc/biology/py-dna-features-viewer/distinfo:1.1  Sun Nov  5 17:54:43 2023
+++ pkgsrc/biology/py-dna-features-viewer/distinfo      Wed Feb 18 08:46:07 2026
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.1 2023/11/05 17:54:43 bacon Exp $
+$NetBSD: distinfo,v 1.2 2026/02/18 08:46:07 wiz Exp $
 
-BLAKE2s (dna_features_viewer-3.1.3.tar.gz) = 96afa139d207b7d3c4f43f3f9d5f22926fbd2655b686f84ea43d120f5b697ac5
-SHA512 (dna_features_viewer-3.1.3.tar.gz) = eb73fb9f362c5b53e16e2ce96876ffd5c59da991e39dccf870c2c2ee89f8ea8199ef5c45a423c79ae3c1e66806cac7d2b24f681ee36cbaa8fdea3d66859df368
-Size (dna_features_viewer-3.1.3.tar.gz) = 40331 bytes
+BLAKE2s (dna_features_viewer-3.1.5.tar.gz) = 8d8528467583ee470f0da664954bb6fb4f7442c55b748e8e3311a236cae85ffd
+SHA512 (dna_features_viewer-3.1.5.tar.gz) = 9789b2e6b97e6120d7a59389cc98b1b11e5b5668113fcbdd63cf0205b7ad6898eb544d34a7f712cbaf3bb04a732cef45672a0ee034e932c8508efca2626f156e
+Size (dna_features_viewer-3.1.5.tar.gz) = 30600 bytes