CVS commit: pkgsrc/math/py-scipy

["Adam Ciarcinski" <adam%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   adam
Date:           Tue Sep 23 17:42:23 UTC 2025

Modified Files:
        pkgsrc/math/py-scipy: Makefile PLIST distinfo

Log Message:
py-scipy: updated to 1.16.2

Issues closed for 1.16.2

BLD: Windows Arm builds
MAINT: specify lower bound for ``pytest`` in ``pyproject.toml``
CI: new GH runners available for macOS 15 and Windows 2025
BUG: signal.periodogram: memory leak
Incomplete license terms for sub components since version 1.16.0...
BUG: optimize.nnls: memory leak
BUG: optimize: missing error checking for slsqp inputs
CI: CUDA compilation failures for all cupy tests
BUG: signal.lombscargle(precenter=True) modifies input array...
CI: macOS conda-forge job failing because of scikit-umfpack upgrade

Pull requests for 1.16.2

BLD: Windows Arm64 wheel support
CI: validate build on Win-ARM64
CI: bump OpenBLAS and cibuildwheel versions
REL, MAINT: prepare for SciPy 1.16.2
BUG: Skip installing gmpy2(test deps) for Win-ARM64
BUG: signal: Avoid unbounded cache for ShortTimeFFT
MAINT: ensure Qhull license file gets included in wheels
BUG: fix regression for non-integer ``maxiter`` in SLSQP
MAINT: Update licensing of bundled software
BUG: signal.ShortTimeFFT: Remove ``@lru_cache`` decorators
BUG: optimize: fix the incompatible dtypes in L-BFGS-B
BUG: signal.lombscargle: replace in-place input adjustments
MAINT: Bump CuPy to 13.6.0 to fix GPU CI
MAINT: add lower bound for pytest
MAINT, BLD: ignore meson wraplock
BUG: fix memory leaks in ``optimize.nnls`` and ``linalg.sqrtm``
CI: pin scikit-umfpack to 0.3.3 to avoid failures, 0.4.2 is broken.


To generate a diff of this commit:
cvs rdiff -u -r1.100 -r1.101 pkgsrc/math/py-scipy/Makefile
cvs rdiff -u -r1.33 -r1.34 pkgsrc/math/py-scipy/PLIST
cvs rdiff -u -r1.61 -r1.62 pkgsrc/math/py-scipy/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/py-scipy/Makefile
diff -u pkgsrc/math/py-scipy/Makefile:1.100 pkgsrc/math/py-scipy/Makefile:1.101
--- pkgsrc/math/py-scipy/Makefile:1.100 Wed Aug 20 12:19:23 2025
+++ pkgsrc/math/py-scipy/Makefile       Tue Sep 23 17:42:23 2025
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.100 2025/08/20 12:19:23 adam Exp $
+# $NetBSD: Makefile,v 1.101 2025/09/23 17:42:23 adam Exp $
 
-DISTNAME=      scipy-1.16.1
+DISTNAME=      scipy-1.16.2
 PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
 CATEGORIES=    math python
 MASTER_SITES=  ${MASTER_SITE_PYPI:=s/scipy/}

Index: pkgsrc/math/py-scipy/PLIST
diff -u pkgsrc/math/py-scipy/PLIST:1.33 pkgsrc/math/py-scipy/PLIST:1.34
--- pkgsrc/math/py-scipy/PLIST:1.33     Wed Aug 20 12:19:23 2025
+++ pkgsrc/math/py-scipy/PLIST  Tue Sep 23 17:42:23 2025
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.33 2025/08/20 12:19:23 adam Exp $
+@comment $NetBSD: PLIST,v 1.34 2025/09/23 17:42:23 adam Exp $
 ${PYSITELIB}/${WHEEL_INFODIR}/LICENSE.txt
 ${PYSITELIB}/${WHEEL_INFODIR}/METADATA
 ${PYSITELIB}/${WHEEL_INFODIR}/RECORD
@@ -2590,6 +2590,7 @@ ${PYSITELIB}/scipy/spatial/kdtree.pyo
 ${PYSITELIB}/scipy/spatial/qhull.py
 ${PYSITELIB}/scipy/spatial/qhull.pyc
 ${PYSITELIB}/scipy/spatial/qhull.pyo
+${PYSITELIB}/scipy/spatial/qhull_src/COPYING_QHULL.txt
 ${PYSITELIB}/scipy/spatial/tests/__init__.py
 ${PYSITELIB}/scipy/spatial/tests/__init__.pyc
 ${PYSITELIB}/scipy/spatial/tests/__init__.pyo

Index: pkgsrc/math/py-scipy/distinfo
diff -u pkgsrc/math/py-scipy/distinfo:1.61 pkgsrc/math/py-scipy/distinfo:1.62
--- pkgsrc/math/py-scipy/distinfo:1.61  Wed Aug 20 12:19:23 2025
+++ pkgsrc/math/py-scipy/distinfo       Tue Sep 23 17:42:23 2025
@@ -1,8 +1,8 @@
-$NetBSD: distinfo,v 1.61 2025/08/20 12:19:23 adam Exp $
+$NetBSD: distinfo,v 1.62 2025/09/23 17:42:23 adam Exp $
 
-BLAKE2s (scipy-1.16.1.tar.gz) = bf4980f4e169a6d156d16a2ae34b1e2b593fed0cea56e2eb85ff4890ddea7bd9
-SHA512 (scipy-1.16.1.tar.gz) = 979a74b9700de0e9731677c056830b1ad108a7376462e43a2a2523addc88bcd3580b84f73552b581d60a3d8774884545d42551f36111334a40268a41ab2513ba
-Size (scipy-1.16.1.tar.gz) = 30580861 bytes
+BLAKE2s (scipy-1.16.2.tar.gz) = 46ebacdfe9bd52de90ff6b2f66e711c9124d637ba9cf35159056a007652b4876
+SHA512 (scipy-1.16.2.tar.gz) = 6b5c1ab6236af5d40850f8b77f8d47494dda9bccf814908ba306b4b3710359d18eb0dd880c05dc4f334cc298d0a2d54d271d5cd5b519190fcfba58524b1d8dce
+Size (scipy-1.16.2.tar.gz) = 30580599 bytes
 SHA1 (patch-scipy_ndimage_src___rank__filter__1d.cpp) = 55fc9396ea8268c7ae5e346a70b4fe8e43134c32
 SHA1 (patch-scipy_spatial___ckdtree.pyx) = 09f79827790edb78204cca7bbe25b5f373834dd4
 SHA1 (patch-scipy_special_boost__special__functions.h) = 9a345a5e81c090d16c6394e641624c504efbf4ea