CVS commit: pkgsrc/biology/openbabel

["Thomas Klausner" <wiz%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   wiz
Date:           Mon Aug 18 07:34:38 UTC 2025

Modified Files:
        pkgsrc/biology/openbabel: Makefile distinfo
        pkgsrc/biology/openbabel/patches: patch-CMakeLists.txt

Log Message:
openbabel: fix build with cmake 4


To generate a diff of this commit:
cvs rdiff -u -r1.79 -r1.80 pkgsrc/biology/openbabel/Makefile
cvs rdiff -u -r1.15 -r1.16 pkgsrc/biology/openbabel/distinfo
cvs rdiff -u -r1.1 -r1.2 \
    pkgsrc/biology/openbabel/patches/patch-CMakeLists.txt

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/openbabel/Makefile
diff -u pkgsrc/biology/openbabel/Makefile:1.79 pkgsrc/biology/openbabel/Makefile:1.80
--- pkgsrc/biology/openbabel/Makefile:1.79      Thu Apr 24 14:13:19 2025
+++ pkgsrc/biology/openbabel/Makefile   Mon Aug 18 07:34:38 2025
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.79 2025/04/24 14:13:19 wiz Exp $
+# $NetBSD: Makefile,v 1.80 2025/08/18 07:34:38 wiz Exp $
 
 DISTNAME=      openbabel-3.1.1
 PKGREVISION=   36
@@ -19,6 +19,7 @@ PKGCONFIG_OVERRIDE+=  openbabel-3.pc.cmak
 .include "options.mk"
 
 CMAKE_CONFIGURE_ARGS+= -DLLVM_CONFIG=${LLVM_CONFIG_PATH:Q}
+CMAKE_CONFIGURE_ARGS+= -DCMAKE_POLICY_VERSION_MINIMUM=3.5
 
 .include "../../devel/cmake/build.mk"
 .include "../../biology/coordgenlibs/buildlink3.mk"

Index: pkgsrc/biology/openbabel/distinfo
diff -u pkgsrc/biology/openbabel/distinfo:1.15 pkgsrc/biology/openbabel/distinfo:1.16
--- pkgsrc/biology/openbabel/distinfo:1.15      Fri Jan 31 15:49:47 2025
+++ pkgsrc/biology/openbabel/distinfo   Mon Aug 18 07:34:38 2025
@@ -1,8 +1,8 @@
-$NetBSD: distinfo,v 1.15 2025/01/31 15:49:47 wiz Exp $
+$NetBSD: distinfo,v 1.16 2025/08/18 07:34:38 wiz Exp $
 
 BLAKE2s (openbabel-3.1.1.tar.gz) = 2fd0893c0788fac515338c97961c2671e98286ac7395b8fcd2b3a01311bb0d88
 SHA512 (openbabel-3.1.1.tar.gz) = d46807e8f4e2f0f691e69943e5c5eda9c271271cfca6f66b6df136bbf384502fd3b65a4adf134a4e9e1f2452e1316c9515aa92292b73205b9eb4d7e4d7a85f18
 Size (openbabel-3.1.1.tar.gz) = 36688499 bytes
-SHA1 (patch-CMakeLists.txt) = 2e7755e1660bcef9bde654481056f95739cac384
+SHA1 (patch-CMakeLists.txt) = f60104569616a24e66824445cf35559ee7f0daa7
 SHA1 (patch-cmake_modules_Findcoordgen.cmake) = 5906ee8b00a60640a0a9cfd0481f674bea419ad1
 SHA1 (patch-tools_CMakeLists.txt) = 0ab3d883bce1d9d3dae7155b336f48999615bc1c

Index: pkgsrc/biology/openbabel/patches/patch-CMakeLists.txt
diff -u pkgsrc/biology/openbabel/patches/patch-CMakeLists.txt:1.1 pkgsrc/biology/openbabel/patches/patch-CMakeLists.txt:1.2
--- pkgsrc/biology/openbabel/patches/patch-CMakeLists.txt:1.1   Fri Jan 31 15:49:47 2025
+++ pkgsrc/biology/openbabel/patches/patch-CMakeLists.txt       Mon Aug 18 07:34:38 2025
@@ -1,10 +1,20 @@
-$NetBSD: patch-CMakeLists.txt,v 1.1 2025/01/31 15:49:47 wiz Exp $
+$NetBSD: patch-CMakeLists.txt,v 1.2 2025/08/18 07:34:38 wiz Exp $
 
 Remove obsolete variable.
 
---- CMakeLists.txt.orig        2025-01-31 15:47:24.131445152 +0000
+--- CMakeLists.txt.orig        2020-05-08 15:38:02.000000000 +0000
 +++ CMakeLists.txt
-@@ -344,7 +344,7 @@ elseif(HAVE_STD_TR1_SHARED_PTR_IN_TR1_HE
+@@ -10,9 +10,6 @@ set (CMAKE_CXX_STANDARD 11)
+ 
+ if(COMMAND cmake_policy)
+   cmake_policy(SET CMP0003 NEW)
+-  if(POLICY CMP0042)
+-    cmake_policy(SET CMP0042 OLD)
+-  endif()
+ endif()
+ 
+ include (CheckCXXCompilerFlag)
+@@ -344,7 +341,7 @@ elseif(HAVE_STD_TR1_SHARED_PTR_IN_TR1_HE
  else()
    find_package(Boost)
    if(Boost_FOUND)
@@ -13,7 +23,7 @@ Remove obsolete variable.
      add_definitions(-DUSE_BOOST -DHAVE_SHARED_POINTER)
      set(SHARED_POINTER true)
    else()
-@@ -357,7 +357,7 @@ message(STATUS "Use ${OB_SHARED_PTR_IMPL
+@@ -357,7 +354,7 @@ message(STATUS "Use ${OB_SHARED_PTR_IMPL
  
  find_package(Boost COMPONENTS program_options iostreams)
    if(Boost_FOUND)
@@ -22,7 +32,7 @@ Remove obsolete variable.
   endif()
  
  # Intel C++ Compiler
-@@ -472,7 +472,7 @@ endif()
+@@ -472,7 +469,7 @@ endif()
  
  find_package(Boost COMPONENTS filesystem iostreams unit_test_framework)
  if(Boost_FOUND)