CVS commit: pkgsrc/biology/py-bcbio-gff

["Jason Bacon" <bacon%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   bacon
Date:           Thu Jan 16 13:10:08 UTC 2025

Modified Files:
        pkgsrc/biology/py-bcbio-gff: DESCR Makefile PLIST distinfo

Log Message:
biology/py-bcbio-gff: Update to 0.7.1

A few fixes and updates
Changes: https://github.com/chapmanb/bcbb/commits/master/


To generate a diff of this commit:
cvs rdiff -u -r1.1 -r1.2 pkgsrc/biology/py-bcbio-gff/DESCR \
    pkgsrc/biology/py-bcbio-gff/Makefile pkgsrc/biology/py-bcbio-gff/PLIST \
    pkgsrc/biology/py-bcbio-gff/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/py-bcbio-gff/DESCR
diff -u pkgsrc/biology/py-bcbio-gff/DESCR:1.1 pkgsrc/biology/py-bcbio-gff/DESCR:1.2
--- pkgsrc/biology/py-bcbio-gff/DESCR:1.1       Sun Nov  5 17:51:31 2023
+++ pkgsrc/biology/py-bcbio-gff/DESCR   Thu Jan 16 13:10:08 2025
@@ -1,3 +1,10 @@
-Read and write Generic Feature Format (GFF) with Biopython
-integration.  Meant to be integrated eventually into gffutils,
-making this package obsolete.
+Read and write Generic Feature Format (GFF) with Biopython integration.
+
+* Eventually to be integrated into gffutils, making bcbio-gff ibsolete.
+
+Generic Feature Format (GFF) is a biological sequence file format for
+representing features and annotations on sequences. It is a tab delimited
+format, making it accessible to biologists and editable in text editors and
+spreadsheet programs. It is also well defined and can be parsed via automated
+programs. GFF files are available from many of the large sequencing and
+annotation centers.
Index: pkgsrc/biology/py-bcbio-gff/Makefile
diff -u pkgsrc/biology/py-bcbio-gff/Makefile:1.1 pkgsrc/biology/py-bcbio-gff/Makefile:1.2
--- pkgsrc/biology/py-bcbio-gff/Makefile:1.1    Sun Nov  5 17:51:31 2023
+++ pkgsrc/biology/py-bcbio-gff/Makefile        Thu Jan 16 13:10:08 2025
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.1 2023/11/05 17:51:31 bacon Exp $
+# $NetBSD: Makefile,v 1.2 2025/01/16 13:10:08 bacon Exp $
 
-DISTNAME=      bcbio-gff-0.7.0
-PKGNAME=       ${PYPKGPREFIX}-bcbio-gff-0.7.0
+DISTNAME=      bcbio-gff-${PKGVERSION_NOREV}
+PKGNAME=       ${PYPKGPREFIX}-bcbio-gff-0.7.1
 CATEGORIES=    biology
 MASTER_SITES=  ${MASTER_SITE_PYPI:=b/bcbio-gff/}
 
Index: pkgsrc/biology/py-bcbio-gff/PLIST
diff -u pkgsrc/biology/py-bcbio-gff/PLIST:1.1 pkgsrc/biology/py-bcbio-gff/PLIST:1.2
--- pkgsrc/biology/py-bcbio-gff/PLIST:1.1       Sun Nov  5 17:51:31 2023
+++ pkgsrc/biology/py-bcbio-gff/PLIST   Thu Jan 16 13:10:08 2025
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.1 2023/11/05 17:51:31 bacon Exp $
+@comment $NetBSD: PLIST,v 1.2 2025/01/16 13:10:08 bacon Exp $
 ${PYSITELIB}/BCBio/GFF/GFFOutput.py
 ${PYSITELIB}/BCBio/GFF/GFFOutput.pyc
 ${PYSITELIB}/BCBio/GFF/GFFOutput.pyo
Index: pkgsrc/biology/py-bcbio-gff/distinfo
diff -u pkgsrc/biology/py-bcbio-gff/distinfo:1.1 pkgsrc/biology/py-bcbio-gff/distinfo:1.2
--- pkgsrc/biology/py-bcbio-gff/distinfo:1.1    Sun Nov  5 17:51:31 2023
+++ pkgsrc/biology/py-bcbio-gff/distinfo        Thu Jan 16 13:10:08 2025
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.1 2023/11/05 17:51:31 bacon Exp $
+$NetBSD: distinfo,v 1.2 2025/01/16 13:10:08 bacon Exp $
 
-BLAKE2s (bcbio-gff-0.7.0.tar.gz) = cd9552901386757d625b2bcef204c6aba12f9219727aff4e866e9c0cb10904fb
-SHA512 (bcbio-gff-0.7.0.tar.gz) = 3251c31e714633e0ea97c2114392563051e4076ded1754c3064c2f79fcc108fffe80f76a49a711032c6871829f87548b4fc8b328a0ea272ec51fe41c6f85a356
-Size (bcbio-gff-0.7.0.tar.gz) = 20041 bytes
+BLAKE2s (bcbio-gff-0.7.1.tar.gz) = 917810f9e112e51afd539b9307e1d05b8fa52e6d8dfa1a375a1705430e6a8f4d
+SHA512 (bcbio-gff-0.7.1.tar.gz) = 5cb931835e01a211b2fa9a52f6c5ee6a0a23f48a7a33862eb698110a1dc4f154f417ad626a72cab55f4065889f40349e8f955df6b0190e0377989ffaa182b7b7
+Size (bcbio-gff-0.7.1.tar.gz) = 20102 bytes