CVS commit: pkgsrc/math/R-lme4

["Makoto Fujiwara" <mef%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   mef
Date:           Mon Nov  4 00:37:07 UTC 2024

Modified Files:
        pkgsrc/math/R-lme4: Makefile distinfo

Log Message:
(math/R-lme4) Updated 1.1.35.1 to 1.1.35.5

CHANGES IN VERSION 1.1-35.5:

  USER-VISIBLE CHANGES:

         * in 'predict', the synonyms 'ReForm', 'REForm', and 'REform'
           of 're.form' are now hard-deprecated, giving an error (after
           10 years of soft deprecation)

  OTHER CHANGES:

         * minor adjustments in test tolerances

         * correct Matrix dependency to >= 1.2-3

CHANGES IN VERSION 1.1-35.4 (2024-06-19):

  BUG FIXES:

         * 'predict(., re.form=...)' works in a wider range of cases
           (GH #691)

         * Gamma simulation now uses correct shape parameter (GH #782)

         * Avoid triggering RcppEigen UBSAN bug(?) in the case of
           profiling fixed effects in a 'merMod' object with a single
           fixed effect parameter (GH #794: lots of help from Dirk
           Eddelbuettel and Mikael Jagan)

         * fix bug in plot methods (cbind'ing zero-length objects)

CHANGES IN VERSION 1.1-35.3 (2024-04-16):

  BUG FIXES:

         * bug-fix for ASAN/memory access problem in
           CholmodDecomposition (Mikael Jagan)

CHANGES IN VERSION 1.1-35.2 (2024-03-28):

        * This is primarily a 'bump' release to ensure that package
          repositories rebuild binaries with the latest version of the
          'Matrix' package.

  BUG FIXES:

         * 'simulate' works (again) with 're.form=NULL' when 'NA'
           values are present in the data (GH #737, @frousseu)

  USER-VISIBLE CHANGES:

         * updated tests of upstream 'Matrix' version; should now warn
           only on ABI incompatibility, not on package version mismatch
           alone


To generate a diff of this commit:
cvs rdiff -u -r1.10 -r1.11 pkgsrc/math/R-lme4/Makefile
cvs rdiff -u -r1.9 -r1.10 pkgsrc/math/R-lme4/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/R-lme4/Makefile
diff -u pkgsrc/math/R-lme4/Makefile:1.10 pkgsrc/math/R-lme4/Makefile:1.11
--- pkgsrc/math/R-lme4/Makefile:1.10    Sat Jan 27 10:22:20 2024
+++ pkgsrc/math/R-lme4/Makefile Mon Nov  4 00:37:07 2024
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.10 2024/01/27 10:22:20 mef Exp $
+# $NetBSD: Makefile,v 1.11 2024/11/04 00:37:07 mef Exp $
 
 R_PKGNAME=     lme4
-R_PKGVER=      1.1-35.1
+R_PKGVER=      1.1-35.5
 
 MAINTAINER=    pkgsrc-users%NetBSD.org@localhost
 COMMENT=       Linear mixed-effects models using Eigen and S4

Index: pkgsrc/math/R-lme4/distinfo
diff -u pkgsrc/math/R-lme4/distinfo:1.9 pkgsrc/math/R-lme4/distinfo:1.10
--- pkgsrc/math/R-lme4/distinfo:1.9     Sat Jan 27 10:22:20 2024
+++ pkgsrc/math/R-lme4/distinfo Mon Nov  4 00:37:07 2024
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.9 2024/01/27 10:22:20 mef Exp $
+$NetBSD: distinfo,v 1.10 2024/11/04 00:37:07 mef Exp $
 
-BLAKE2s (R/lme4_1.1-35.1.tar.gz) = e910bcbf2d1d7838ba0a27fff241be74e26783f1b5960904dbd5b76fbe23d644
-SHA512 (R/lme4_1.1-35.1.tar.gz) = c285d071bad962898761f1a8fff1dbd0ac0a2a40877650b6a2cf8a322a59b7241f2b96414a525f5c712d2f913e5a571176d76ad97c8138c01d0cae35db3ca11d
-Size (R/lme4_1.1-35.1.tar.gz) = 2942848 bytes
+BLAKE2s (R/lme4_1.1-35.5.tar.gz) = 24de84857af534e449cdf288baf0292663232b1dfa2f54ba45d5c159f2673302
+SHA512 (R/lme4_1.1-35.5.tar.gz) = accd5daadde914b93f4480983617202445859fc58fca52b23e59c90d881dcf9c70e6390cc4072353e714543c4ae42e7175f6a7cbbbe39d125e30e55456f46fe6
+Size (R/lme4_1.1-35.5.tar.gz) = 3300116 bytes