CVS commit: pkgsrc/devel/R-pak

["Makoto Fujiwara" <mef%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   mef
Date:           Sun Jan 21 14:19:57 UTC 2024

Modified Files:
        pkgsrc/devel/R-pak: Makefile distinfo

Log Message:
(devel/R-pak) Updated 0.5.1 to 0.7.1

# pak 0.7.1

* pak can now handle the case when `Config/Needs/*` dependencies
  are requested for package from a repository.

* pak uses safer `*printf()` format strings now.

# pak 0.7.0

* pak now correctly handles the latest GitHub release with
  the `@*release` notation (@pawelru,
  https://github.com/r-lib/pkgdepends/pull/321)

* pak now correctly handles having multiple instances of the same
  package in the metadata, with different R version requirements
  (#534, #538, https://github.com/r-lib/pkgdepends/pull/331).

* `git::` package references work better now for Azure DevOps
  (@jameslairdsmith, https://github.com/r-lib/pkgdepends/pull/333,
  https://github.com/r-lib/pkgdepends/pull/342).

* pak now does a better job at accepting installed packages, and
  avoids reinstalling more packages than needed when using a lock file
  (https://github.com/r-lib/actions/issues/759,
  https://github.com/r-lib/pkgdepends/pull/338).

# pak 0.6.0

* pak now requires R >= 3.5.0.

* Many improvements in system requirements support:
  - New functions:
    - `pkg_sysreqs()`: calculate system requirements of packages.
    - `sysreqs_db_list()`, `sysreqs_db_match()`, `sysreqs_db_update()`:
      query the system requirements database.
    - `sysreqs_list_system_packages()`, `sysreqs_check_installed()`,
      `sysreqs_fix_installed()`: query and install missing system packages.
    - `sysreqs_platforms()`: list supported platforms.
  - The installation proposal, printed before installation, now includes
    required and missing system packages, on supported platforms.
  - New `sysreqs_platform` configuration option to override the auto-detected
    platform.
  - Faster, asynchronous system requirements lookup.
  - pak now does not reinstall system requirements by default,
    if they are already installed. (You can force a reinstall/upgrade
    with the `sysreqs_update` configuration option.)

* New `gitlab::` package source to install packages from GitLab
  (https://github.com/r-lib/pkgdepends/pull/315).

* pak now correctly parses multiple `git::` packages at once
  (https://github.com/r-lib/pkgdepends/issues/318).

* `git::` package sources now support version 1 of the git protocol.
  E.g. the Bioconductor git repositories now work:
  `git::https://git.bioconductor.org/packages/limma`
  (https://github.com/r-lib/pkgdepends/issues/314).

* The `platforms` config parameter now works correctly with `deps::`
  package sources (#522).

* New `include_linkingto` config parameter to always include `LinkingTo`
  packages in the solution, even for binaries
  (https://github.com/r-lib/pkgdepends/issues/485).

* `pkg_name_check()` now does not include Acromine results, because the web
  site was unstable.

* In `repo_add()` and `repo_resolve()` the `MRAN@` prefix is now deprecated
  and resolves to PPM, because MRAN will be retired soon. See more at
  <https://posit.co/blog/migrating-from-mran-to-posit-package-manager/>.

* The metadata cache now has `SystemRequirements` information for Bioconductor
  packages.


To generate a diff of this commit:
cvs rdiff -u -r1.6 -r1.7 pkgsrc/devel/R-pak/Makefile
cvs rdiff -u -r1.7 -r1.8 pkgsrc/devel/R-pak/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/devel/R-pak/Makefile
diff -u pkgsrc/devel/R-pak/Makefile:1.6 pkgsrc/devel/R-pak/Makefile:1.7
--- pkgsrc/devel/R-pak/Makefile:1.6     Tue Aug 15 01:21:16 2023
+++ pkgsrc/devel/R-pak/Makefile Sun Jan 21 14:19:57 2024
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.6 2023/08/15 01:21:16 mef Exp $
+# $NetBSD: Makefile,v 1.7 2024/01/21 14:19:57 mef Exp $
 
 R_PKGNAME=     pak
-R_PKGVER=      0.5.1
+R_PKGVER=      0.7.1
 CATEGORIES=    devel
 
 MAINTAINER=    pkgsrc-users%NetBSD.org@localhost
@@ -29,7 +29,7 @@ DEPENDS+=     R-jsonlite>=1.7.1:../../textpr
 DEPENDS+=      R-curl>=3.2:../../www/R-curl
 
 # Packages suggested but not available:
-#  'distro', 'pkgdepends', 'pkgsearch'
+#  'pkgdepends', 'pkgsearch'
 TEST_DEPENDS+= R-covr-[0-9]*:../../devel/R-covr
 TEST_DEPENDS+= R-gitcreds-[0-9]*:../../security/R-gitcreds
 TEST_DEPENDS+= R-mockery-[0-9]*:../../devel/R-mockery
@@ -37,7 +37,11 @@ TEST_DEPENDS+=       R-pingr-[0-9]*:../../net/
 TEST_DEPENDS+= R-rstudioapi-[0-9]*:../../math/R-rstudioapi
 TEST_DEPENDS+= R-testthat-[0-9]*:../../devel/R-testthat
 
-USE_LANGUAGES= # none
+USE_LANGUAGES= c
+
+REPLACE_R+=    src/library/cli/inst/examples/apps/*.R
+REPLACE_R+=    src/library/cli/exec/*.R
 
 .include "../../math/R/Makefile.extension"
+.include "../../www/curl/buildlink3.mk"
 .include "../../mk/bsd.pkg.mk"

Index: pkgsrc/devel/R-pak/distinfo
diff -u pkgsrc/devel/R-pak/distinfo:1.7 pkgsrc/devel/R-pak/distinfo:1.8
--- pkgsrc/devel/R-pak/distinfo:1.7     Sun Jun 18 14:17:58 2023
+++ pkgsrc/devel/R-pak/distinfo Sun Jan 21 14:19:57 2024
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.7 2023/06/18 14:17:58 mef Exp $
+$NetBSD: distinfo,v 1.8 2024/01/21 14:19:57 mef Exp $
 
-BLAKE2s (R/pak_0.5.1.tar.gz) = 48e16ae0636e75ad43869bb02912cc06caa5539eb86f76dacb5815e090779672
-SHA512 (R/pak_0.5.1.tar.gz) = 909587ee3dd7bb2ec81a43c41a529004827dc3f694511517b4093bdb97281ce62b670b7f82dd5ea08140637789d38a33f02239db2ab089a01d17aaec8491eb6d
-Size (R/pak_0.5.1.tar.gz) = 146787 bytes
+BLAKE2s (R/pak_0.7.1.tar.gz) = f9c515e9e83b3c98f730f786e0f0f65bf0e04b0b6ff397623ca4e36309be6cc4
+SHA512 (R/pak_0.7.1.tar.gz) = fc41fb17bd09ea1f3c7a691c52f07055cdabcd8198f20d2c3ce0780569b8e9c7c6770ecc6cbdbac1af72ac51ec5bc4232db6e0ec790efcfa94c3d9ceed739636
+Size (R/pak_0.7.1.tar.gz) = 2022732 bytes