CVS commit: pkgsrc/biology/atac-seq

["Jason Bacon" <bacon%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   bacon
Date:           Wed Jan 10 16:10:17 UTC 2024

Modified Files:
        pkgsrc/biology/atac-seq: DESCR Makefile

Log Message:
biology/atac-seq: Update to 1.4

Add biology/py-macs3 dep to metapackage


To generate a diff of this commit:
cvs rdiff -u -r1.1 -r1.2 pkgsrc/biology/atac-seq/DESCR
cvs rdiff -u -r1.8 -r1.9 pkgsrc/biology/atac-seq/Makefile

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/atac-seq/DESCR
diff -u pkgsrc/biology/atac-seq/DESCR:1.1 pkgsrc/biology/atac-seq/DESCR:1.2
--- pkgsrc/biology/atac-seq/DESCR:1.1   Mon Jan 23 21:38:50 2023
+++ pkgsrc/biology/atac-seq/DESCR       Wed Jan 10 16:10:17 2024
@@ -1,5 +1,6 @@
-The atac-seq meta-package provides the core tools needed for performing
-a typical ATAC-Seq differential accessibility analysis, including
-adapter trimming, quality control, alignment, peak calling, and
-identification of differentially accessible peaks.  Researchers may
-want additional tools for data manipulation, gene ontology, etc.
+The atac-seq meta-package provides the core tools needed for
+performing a typical ATAC-Seq differential accessibility analysis,
+including adapter trimming, quality control, alignment, peak calling,
+and identification of differentially accessible peaks.  Researchers
+may want additional tools for data manipulation, gene ontology,
+etc.

Index: pkgsrc/biology/atac-seq/Makefile
diff -u pkgsrc/biology/atac-seq/Makefile:1.8 pkgsrc/biology/atac-seq/Makefile:1.9
--- pkgsrc/biology/atac-seq/Makefile:1.8        Sat Dec 23 16:23:22 2023
+++ pkgsrc/biology/atac-seq/Makefile    Wed Jan 10 16:10:17 2024
@@ -1,9 +1,9 @@
-# $NetBSD: Makefile,v 1.8 2023/12/23 16:23:22 bacon Exp $
+# $NetBSD: Makefile,v 1.9 2024/01/10 16:10:17 bacon Exp $
 #
 
 # Update minor version when adding or removing dependencies
 # Update revision for all other changes
-DISTNAME=      atac-seq-1.3
+DISTNAME=      atac-seq-1.4
 CATEGORIES=    biology meta-pkgs
 MASTER_SITES=  # empty
 
@@ -20,6 +20,7 @@ DEPENDS+=     bowtie2>0:../../biology/bowtie
 DEPENDS+=      samtools>0:../../biology/samtools
 DEPENDS+=      igv>0:../../biology/igv
 DEPENDS+=      ${PYPKGPREFIX}-macs2>0:../../biology/py-macs2
+DEPENDS+=      ${PYPKGPREFIX}-macs3>0:../../biology/py-macs3
 DEPENDS+=      fasda>0:../../biology/fasda
 DEPENDS+=      peak-classifier>0:../../biology/peak-classifier
 DEPENDS+=      ${PYPKGPREFIX}-multiqc-[0-9]*:../../biology/py-multiqc