CVS commit: pkgsrc/biology/atac-seq

["Jason Bacon" <bacon%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   bacon
Date:           Fri Jul 28 16:45:50 UTC 2023

Modified Files:
        pkgsrc/biology/atac-seq: Makefile

Log Message:
biology/atac-seq: Add curl to metaport deps

Standardizing on a download tool simplifies pipelines


To generate a diff of this commit:
cvs rdiff -u -r1.4 -r1.5 pkgsrc/biology/atac-seq/Makefile

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/atac-seq/Makefile
diff -u pkgsrc/biology/atac-seq/Makefile:1.4 pkgsrc/biology/atac-seq/Makefile:1.5
--- pkgsrc/biology/atac-seq/Makefile:1.4        Sat Jul 22 13:30:15 2023
+++ pkgsrc/biology/atac-seq/Makefile    Fri Jul 28 16:45:50 2023
@@ -1,26 +1,27 @@
-# $NetBSD: Makefile,v 1.4 2023/07/22 13:30:15 bacon Exp $
+# $NetBSD: Makefile,v 1.5 2023/07/28 16:45:50 bacon Exp $
 #
 
-DISTNAME=      atac-seq-1.2
+DISTNAME=      atac-seq-1.2.1
 CATEGORIES=    biology meta-pkgs
 MASTER_SITES=  # empty
 
 OWNER=         bacon%NetBSD.org@localhost
 COMMENT=       Core tools needed for ATAC-Seq analysis
 
-DEPENDS+=      fastq-trim>=0:../../biology/fastq-trim
-DEPENDS+=      fastqc>=0:../../biology/fastqc
-DEPENDS+=      biolibc-tools>=0:../../biology/biolibc-tools
-DEPENDS+=      gffread>=0:../../biology/gffread
-DEPENDS+=      bwa>=0:../../biology/bwa
-DEPENDS+=      bowtie2>=0:../../biology/bowtie2
-DEPENDS+=      samtools>=0:../../biology/samtools
-DEPENDS+=      igv>=0:../../biology/igv
-DEPENDS+=      ${PYPKGPREFIX}-macs2>=0:../../biology/py-macs2
-DEPENDS+=      fasda>=0:../../biology/fasda
-DEPENDS+=      peak-classifier>=0:../../biology/peak-classifier
-DEPENDS+=      webbrowser>=0:../../www/webbrowser
+DEPENDS+=      fastq-trim>0:../../biology/fastq-trim
+DEPENDS+=      fastqc>0:../../biology/fastqc
+DEPENDS+=      biolibc-tools>0:../../biology/biolibc-tools
+DEPENDS+=      gffread>0:../../biology/gffread
+DEPENDS+=      bwa>0:../../biology/bwa
+DEPENDS+=      bowtie2>0:../../biology/bowtie2
+DEPENDS+=      samtools>0:../../biology/samtools
+DEPENDS+=      igv>0:../../biology/igv
+DEPENDS+=      ${PYPKGPREFIX}-macs2>0:../../biology/py-macs2
+DEPENDS+=      fasda>0:../../biology/fasda
+DEPENDS+=      peak-classifier>0:../../biology/peak-classifier
 DEPENDS+=      ${PYPKGPREFIX}-multiqc-[0-9]*:../../biology/py-multiqc
+DEPENDS+=      webbrowser>0:../../www/webbrowser
+DEPENDS+=      curl>0:../../www/curl
 
 META_PACKAGE=  yes