CVS commit: pkgsrc/biology/rna-seq

["Jason Bacon" <bacon%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   bacon
Date:           Fri Jul 28 16:43:41 UTC 2023

Modified Files:
        pkgsrc/biology/rna-seq: Makefile

Log Message:
biology/rna-seq: Add curl to metaport deps

Standardizing on a download tool simplifies pipelines


To generate a diff of this commit:
cvs rdiff -u -r1.5 -r1.6 pkgsrc/biology/rna-seq/Makefile

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/rna-seq/Makefile
diff -u pkgsrc/biology/rna-seq/Makefile:1.5 pkgsrc/biology/rna-seq/Makefile:1.6
--- pkgsrc/biology/rna-seq/Makefile:1.5 Sun Jul 23 02:10:54 2023
+++ pkgsrc/biology/rna-seq/Makefile     Fri Jul 28 16:43:40 2023
@@ -1,27 +1,27 @@
-# $NetBSD: Makefile,v 1.5 2023/07/23 02:10:54 wiz Exp $
+# $NetBSD: Makefile,v 1.6 2023/07/28 16:43:40 bacon Exp $
+#
 
-DISTNAME=      rna-seq-1.2
+DISTNAME=      rna-seq-1.2.1
 CATEGORIES=    biology meta-pkgs
 MASTER_SITES=  # empty
 
 OWNER=         bacon%NetBSD.org@localhost
 COMMENT=       Core tools needed for RNA-Seq analysis
 
-DEPENDS+=      fastq-trim>=0:../../biology/fastq-trim
-DEPENDS+=      fastqc>=0:../../biology/fastqc
-DEPENDS+=      biolibc-tools>=0:../../biology/biolibc-tools
-DEPENDS+=      gffread>=0:../../biology/gffread
-DEPENDS+=      kallisto>=0:../../biology/kallisto
-DEPENDS+=      hisat2>=0:../../biology/hisat2
-DEPENDS+=      samtools>=0:../../biology/samtools
-DEPENDS+=      igv>=0:../../biology/igv
-DEPENDS+=      fasda>=0:../../biology/fasda
-DEPENDS+=      webbrowser>=0:../../www/webbrowser
+DEPENDS+=      fastq-trim>0:../../biology/fastq-trim
+DEPENDS+=      fastqc>0:../../biology/fastqc
+DEPENDS+=      biolibc-tools>0:../../biology/biolibc-tools
+DEPENDS+=      gffread>0:../../biology/gffread
+DEPENDS+=      kallisto>0:../../biology/kallisto
+DEPENDS+=      hisat2>0:../../biology/hisat2
+DEPENDS+=      samtools>0:../../biology/samtools
+DEPENDS+=      igv>0:../../biology/igv
+DEPENDS+=      fasda>0:../../biology/fasda
 DEPENDS+=      ${PYPKGPREFIX}-multiqc-[0-9]*:../../biology/py-multiqc
+DEPENDS+=      webbrowser>0:../../www/webbrowser
+DEPENDS+=      curl>0:../../www/curl
 
 META_PACKAGE=  yes
 
-PYTHON_VERSIONS_INCOMPATIBLE=  27 38
-
 .include "../../lang/python/application.mk"
 .include "../../mk/bsd.pkg.mk"