CVS commit: pkgsrc/graphics/R-ggplot2

["Makoto Fujiwara" <mef%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   mef
Date:           Sun Jun 11 15:05:51 UTC 2023

Modified Files:
        pkgsrc/graphics/R-ggplot2: Makefile distinfo

Log Message:
(graphics/R-ggplot2) Updated 3.3.5 to 3.4.2

# ggplot2 3.4.2
This is a hotfix release anticipating changes in r-devel, but folds in upkeep
changes and a few bug fixes as well.

## Minor improvements

* Various type checks and their messages have been standardised
  (@teunbrand, #4834).

* ggplot2 now uses `scales::DiscreteRange` and `scales::ContinuousRange`, which
  are available to write scale extensions from scratch (@teunbrand, #2710).

* The `layer_data()`, `layer_scales()` and `layer_grob()` now have the default
  `plot = last_plot()` (@teunbrand, #5166).

* The `datetime_scale()` scale constructor is now exported for use in extension
  packages (@teunbrand, #4701).

## Bug fixes

* `update_geom_defaults()` and `update_stat_defaults()` now return properly
  classed objects and have updated docs (@dkahle, #5146).

* For the purposes of checking required or non-missing aesthetics, character
  vectors are no longer considered non-finite (@teunbrand, @4284).

* `annotation_logticks()` skips drawing ticks when the scale range is non-finite
  instead of throwing an error (@teunbrand, #5229).

* Fixed spurious warnings when the `weight` was used in `stat_bin_2d()`,
  `stat_boxplot()`, `stat_contour()`, `stat_bin_hex()` and `stat_quantile()`
  (@teunbrand, #5216).

* To prevent changing the plotting order, `stat_sf()` is now computed per panel
  instead of per group (@teunbrand, #4340).

* Fixed bug in `coord_sf()` where graticule lines didn't obey
  `panel.grid.major`'s linewidth setting (@teunbrand, #5179).

* `geom_text()` drops observations where `angle = NA` instead of throwing an
  error (@teunbrand, #2757).

# ggplot2 3.4.1
This is a small release focusing on fixing regressions in the 3.4.0 release
and minor polishes.

## Breaking changes

* The computed variable `y` in `stat_ecdf()` has been superseded by `ecdf` to
  prevent incorrect scale transformations (@teunbrand, #5113 and #5112).

## New features

* Added `scale_linewidth_manual()` and `scale_linewidth_identity()` to support
  the `linewidth` aesthetic (@teunbrand, #5050).

* `ggsave()` warns when multiple `filename`s are given, and only writes to the
  first file (@teunbrand, #5114).

## Bug fixes

* Fixed a regression in `geom_hex()` where aesthetics were replicated across
  bins (@thomasp85, #5037 and #5044).

* Using two ordered factors as facetting variables in
  `facet_grid(..., as.table = FALSE)` now throws a warning instead of an
  error (@teunbrand, #5109).

* Fixed misbehaviour of `draw_key_boxplot()` and `draw_key_crossbar()` with
  skewed key aspect ratio (@teunbrand, #5082).

* Fixed spurious warning when `weight` aesthetic was used in `stat_smooth()`
  (@teunbrand based on @clauswilke's suggestion, #5053).

* The `lwd` alias is now correctly replaced by `linewidth` instead of `size`
  (@teunbrand based on @clauswilke's suggestion #5051).

* Fixed a regression in `Coord$train_panel_guides()` where names of guides were
  dropped (@maxsutton, #5063).

In binned scales:

* Automatic breaks should no longer be out-of-bounds, and automatic limits are
  adjusted to include breaks (@teunbrand, #5082).

* Zero-range limits no longer throw an error and are treated akin to continuous
  scales with zero-range limits (@teunbrand, #5066).

* The `trans = "date"` and `trans = "time"` transformations were made compatible
  (@teunbrand, #4217).

# ggplot2 3.4.0
This is a minor release focusing on tightening up the internals and ironing out
some inconsistencies in the API. The biggest change is the addition of the
`linewidth` aesthetic that takes of sizing the width of any line from `size`.
This change, while attempting to be as non-breaking as possible, has the
potential to change the look of some of your plots.

Other notable changes is a complete redo of the error and warning messaging in
ggplot2 using the cli package. Messaging is now better contextualised and it
should be easier to identify which layer an error is coming from. Last, we have
now made the switch to using the vctrs package internally which means that
support for vctrs classes as variables should improve, along with some small
gains in rendering speed.

## Breaking changes

* A `linewidth` aesthetic has been introduced and supersedes the `size`
  aesthetic for scaling the width of lines in line based geoms. `size` will
  remain functioning but deprecated for these geoms and it is recommended to
  update all code to reflect the new aesthetic. For geoms that have _both_ point
  sizing and linewidth sizing (`geom_pointrange()` and `geom_sf`) `size` now
  **only** refers to sizing of points which can leads to a visual change in old
  code (@thomasp85, #3672)

* The default line width for polygons in `geom_sf()` have been decreased to 0.2
  to reflect that this is usually used for demarking borders where a thinner
  line is better suited. This change was made since we already induced a
  visual change in `geom_sf()` with the introduction of the `linewidth`
  aesthetic.

* The dot-dot notation (`..var..`) and `stat()`, which have been superseded by
  `after_stat()`, are now formally deprecated (@yutannihilation, #3693).

* `qplot()` is now formally deprecated (@yutannihilation, #3956).

* `stage()` now properly refers to the values without scale transformations for
  the stage of `after_stat`. If your code requires the scaled version of the
  values for some reason, you have to apply the same transformation by yourself,
  e.g. `sqrt()` for `scale_{x,y}_sqrt()` (@yutannihilation and @teunbrand, #4155).

* Use `rlang::hash()` instead of `digest::digest()`. This update may lead to
  changes in the automatic sorting of legends. In order to enforce a specific
  legend order use the `order` argument in the guide. (@thomasp85, #4458)

* referring to `x` in backquoted expressions with `label_bquote()` is no longer
  possible.

* The `ticks.linewidth` and `frame.linewidth` parameters of `guide_colourbar()`
  are now multiplied with `.pt` like elsewhere in ggplot2. It can cause visual
  changes when these arguments are not the defaults and these changes can be
  restored to their previous behaviour by adding `/ .pt` (@teunbrand #4314).

* `scale_*_viridis_b()` now uses the full range of the viridis scales
  (@gregleleu, #4737)

## New features

* `geom_col()` and `geom_bar()` gain a new `just` argument. This is set to `0.5`
  by default; use `just = 0`/`just = 1` to place columns on the left/right
  of the axis breaks.
  (@wurli, #4899)

* `geom_density()` and `stat_density()` now support `bounds` argument
  to estimate density with boundary correction (@echasnovski, #4013).

* ggplot now checks during statistical transformations whether any data
  columns were dropped and warns about this. If stats intend to drop
  data columns they can declare them in the new field `dropped_aes`.
  (@clauswilke, #3250)

* `...` supports `rlang::list2` dynamic dots in all public functions.
  (@mone27, #4764)

* `theme()` now has a `strip.clip` argument, that can be set to `"off"` to
  prevent the clipping of strip text and background borders (@teunbrand, #4118)

* `geom_contour()` now accepts a function in the `breaks` argument
  (@eliocamp, #4652).

## Minor improvements and bug fixes

* Fix a bug in `position_jitter()` where infinity values were dropped (@javlon,
  #4790).

* `geom_linerange()` now respects the `na.rm` argument (#4927, @thomasp85)

* Improve the support for `guide_axis()` on `coord_trans()`
  (@yutannihilation, #3959)

* Added `stat_align()` to align data without common x-coordinates prior to
  stacking. This is now the default stat for `geom_area()` (@thomasp85, #4850)

* Fix a bug in `stat_contour_filled()` where break value differences below a
  certain number of digits would cause the computations to fail (@thomasp85,
  #4874)

* Secondary axis ticks are now positioned more precisely, removing small visual
  artefacts with alignment between grid and ticks (@thomasp85, #3576)

* Improve `stat_function` documentation regarding `xlim` argument.
  (@92amartins, #4474)

* Fix various issues with how `labels`, `breaks`, `limits`, and `show.limits`
  interact in the different binning guides (@thomasp85, #4831)

* Automatic break calculation now squishes the scale limits to the domain
  of the transformation. This allows `scale_{x/y}_sqrt()` to find breaks at 0
  when appropriate (@teunbrand, #980).

* Using multiple modified aesthetics correctly will no longer trigger warnings.
  If used incorrectly, the warning will now report the duplicated aesthetic
  instead of `NA` (@teunbrand, #4707).

* `aes()` now supports the `!!!` operator in its first two arguments
  (#2675). Thanks to @yutannihilation and @teunbrand for draft
  implementations.

* Require rlang >= 1.0.0 (@billybarc, #4797)

* `geom_violin()` no longer issues "collapsing to unique 'x' values" warning
  (@bersbersbers, #4455)

* `annotate()` now documents unsupported geoms (`geom_abline()`, `geom_hline()`
  and `geom_vline()`), and warns when they are requested (@mikmart, #4719)

* `presidential` dataset now includes Trump's presidency (@bkmgit, #4703).

* `position_stack()` now works fully with `geom_text()` (@thomasp85, #4367)

* `geom_tile()` now correctly recognises missing data in `xmin`, `xmax`, `ymin`,
  and `ymax` (@thomasp85 and @sigmapi, #4495)

* `geom_hex()` will now use the binwidth from `stat_bin_hex()` if present,
  instead of deriving it (@thomasp85, #4580)

* `geom_hex()` now works on non-linear coordinate systems (@thomasp85)

* Fixed a bug throwing errors when trying to render an empty plot with secondary
  axes (@thomasp85, #4509)

* Axes are now added correctly in `facet_wrap()` when `as.table = FALSE`
  (@thomasp85, #4553)

* Better compatibility of custom device functions in `ggsave()`
  (@thomasp85, #4539)

* Binning scales are now more resilient to calculated limits that ends up being
  `NaN` after transformations (@thomasp85, #4510)

* Strip padding in `facet_grid()` is now only in effect if
  `strip.placement = "outside"` _and_ an axis is present between the strip and
  the panel (@thomasp85, #4610)

* Aesthetics of length 1 are now recycled to 0 if the length of the data is 0
  (@thomasp85, #4588)

* Setting `size = NA` will no longer cause `guide_legend()` to error
  (@thomasp85, #4559)

* Setting `stroke` to `NA` in `geom_point()` will no longer impair the sizing of
  the points (@thomasp85, #4624)

* `stat_bin_2d()` now correctly recognises the `weight` aesthetic
  (@thomasp85, #4646)

* All geoms now have consistent exposure of linejoin and lineend parameters, and
  the guide keys will now respect these settings (@thomasp85, #4653)

* `geom_sf()` now respects `arrow` parameter for lines (@jakeruss, #4659)

* Updated documentation for `print.ggplot` to reflect that it returns
  the original plot, not the result of `ggplot_build()`. (@r2evans, #4390)

* `scale_*_manual()` no longer displays extra legend keys, or changes their
  order, when a named `values` argument has more items than the data. To display
  all `values` on the legend instead, use
  `scale_*_manual(values = vals, limits = names(vals))`. (@teunbrand, @banfai,
  #4511, #4534)

* Updated documentation for `geom_contour()` to correctly reflect argument
  precedence between `bins` and `binwidth`. (@eliocamp, #4651)

* Dots in `geom_dotplot()` are now correctly aligned to the baseline when
  `stackratio != 1` and `stackdir != "up"` (@mjskay, #4614)

* Key glyphs for `geom_boxplot()`, `geom_crossbar()`, `geom_pointrange()`, and
  `geom_linerange()` are now orientation-aware (@mjskay, #4732)

* Updated documentation for `geom_smooth()` to more clearly describe effects of
  the `fullrange` parameter (@thoolihan, #4399).

# ggplot2 3.3.6
This is a very small release only applying an internal change to comply with
R 4.2 and its deprecation of `default.stringsAsFactors()`. There are no user
facing changes and no breaking changes.


To generate a diff of this commit:
cvs rdiff -u -r1.6 -r1.7 pkgsrc/graphics/R-ggplot2/Makefile \
    pkgsrc/graphics/R-ggplot2/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/graphics/R-ggplot2/Makefile
diff -u pkgsrc/graphics/R-ggplot2/Makefile:1.6 pkgsrc/graphics/R-ggplot2/Makefile:1.7
--- pkgsrc/graphics/R-ggplot2/Makefile:1.6      Sat Aug 28 07:03:46 2021
+++ pkgsrc/graphics/R-ggplot2/Makefile  Sun Jun 11 15:05:51 2023
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.6 2021/08/28 07:03:46 mef Exp $
+# $NetBSD: Makefile,v 1.7 2023/06/11 15:05:51 mef Exp $
 
 R_PKGNAME=     ggplot2
-R_PKGVER=      3.3.5
+R_PKGVER=      3.4.2
 CATEGORIES=    graphics
 
 MAINTAINER=    minskim%NetBSD.org@localhost
Index: pkgsrc/graphics/R-ggplot2/distinfo
diff -u pkgsrc/graphics/R-ggplot2/distinfo:1.6 pkgsrc/graphics/R-ggplot2/distinfo:1.7
--- pkgsrc/graphics/R-ggplot2/distinfo:1.6      Tue Oct 26 10:45:55 2021
+++ pkgsrc/graphics/R-ggplot2/distinfo  Sun Jun 11 15:05:51 2023
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.6 2021/10/26 10:45:55 nia Exp $
+$NetBSD: distinfo,v 1.7 2023/06/11 15:05:51 mef Exp $
 
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-Size (R/ggplot2_3.3.5.tar.gz) = 3063309 bytes
+BLAKE2s (R/ggplot2_3.4.2.tar.gz) = 8dd9c04b4cf3adceccba025d23f75f653c4955f62bb722c04cbcb0091b36933e
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