CVS commit: pkgsrc/biology/htslib

["Jason Bacon" <bacon%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   bacon
Date:           Sat Feb 25 13:50:38 UTC 2023

Modified Files:
        pkgsrc/biology/htslib: Makefile PLIST buildlink3.mk distinfo

Log Message:
biology/htslib: Update to 1.17

Numerous enhancements and fixes

Changes: https://github.com/samtools/htslib/releases


To generate a diff of this commit:
cvs rdiff -u -r1.30 -r1.31 pkgsrc/biology/htslib/Makefile
cvs rdiff -u -r1.5 -r1.6 pkgsrc/biology/htslib/PLIST
cvs rdiff -u -r1.8 -r1.9 pkgsrc/biology/htslib/buildlink3.mk
cvs rdiff -u -r1.10 -r1.11 pkgsrc/biology/htslib/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/htslib/Makefile
diff -u pkgsrc/biology/htslib/Makefile:1.30 pkgsrc/biology/htslib/Makefile:1.31
--- pkgsrc/biology/htslib/Makefile:1.30 Wed Dec 28 15:27:16 2022
+++ pkgsrc/biology/htslib/Makefile      Sat Feb 25 13:50:38 2023
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.30 2022/12/28 15:27:16 bacon Exp $
+# $NetBSD: Makefile,v 1.31 2023/02/25 13:50:38 bacon Exp $
 
-DISTNAME=      htslib-1.16
+DISTNAME=      htslib-1.17
 CATEGORIES=    biology
 MASTER_SITES=  ${MASTER_SITE_GITHUB:=samtools/}
 GITHUB_RELEASE=        ${PKGVERSION_NOREV}

Index: pkgsrc/biology/htslib/PLIST
diff -u pkgsrc/biology/htslib/PLIST:1.5 pkgsrc/biology/htslib/PLIST:1.6
--- pkgsrc/biology/htslib/PLIST:1.5     Sat Feb 26 23:08:43 2022
+++ pkgsrc/biology/htslib/PLIST Sat Feb 25 13:50:38 2023
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.5 2022/02/26 23:08:43 bacon Exp $
+@comment $NetBSD: PLIST,v 1.6 2023/02/25 13:50:38 bacon Exp $
 bin/bgzip
 bin/htsfile
 bin/tabix

Index: pkgsrc/biology/htslib/buildlink3.mk
diff -u pkgsrc/biology/htslib/buildlink3.mk:1.8 pkgsrc/biology/htslib/buildlink3.mk:1.9
--- pkgsrc/biology/htslib/buildlink3.mk:1.8     Tue Jun 28 11:31:00 2022
+++ pkgsrc/biology/htslib/buildlink3.mk Sat Feb 25 13:50:38 2023
@@ -1,12 +1,12 @@
-# $NetBSD: buildlink3.mk,v 1.8 2022/06/28 11:31:00 wiz Exp $
+# $NetBSD: buildlink3.mk,v 1.9 2023/02/25 13:50:38 bacon Exp $
 
 BUILDLINK_TREE+=       htslib
 
 .if !defined(HTSLIB_BUILDLINK3_MK)
 HTSLIB_BUILDLINK3_MK:=
 
-BUILDLINK_API_DEPENDS.htslib+= htslib>=1.14
-BUILDLINK_ABI_DEPENDS.htslib+= htslib>=1.15nb1
+BUILDLINK_API_DEPENDS.htslib+= htslib>=1.17
+BUILDLINK_ABI_DEPENDS.htslib+= htslib>=1.17
 BUILDLINK_PKGSRCDIR.htslib?=   ../../biology/htslib
 
 .endif # HTSLIB_BUILDLINK3_MK

Index: pkgsrc/biology/htslib/distinfo
diff -u pkgsrc/biology/htslib/distinfo:1.10 pkgsrc/biology/htslib/distinfo:1.11
--- pkgsrc/biology/htslib/distinfo:1.10 Tue Dec 13 10:27:03 2022
+++ pkgsrc/biology/htslib/distinfo      Sat Feb 25 13:50:38 2023
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.10 2022/12/13 10:27:03 adam Exp $
+$NetBSD: distinfo,v 1.11 2023/02/25 13:50:38 bacon Exp $
 
-BLAKE2s (htslib-1.16.tar.bz2) = 5a4620982ac745706107fd0646de630b2410d133b4966fffa304ef62bb345beb
-SHA512 (htslib-1.16.tar.bz2) = 9fa0b1f9bba50f889d4542825c9543fb3b34c13b4cc0e18940a66fafd130749574bfa2c2663d8b39f0b4ed2b298bf130367cda1b17b2929093d64b386730cbc5
-Size (htslib-1.16.tar.bz2) = 4466776 bytes
+BLAKE2s (htslib-1.17.tar.bz2) = 01a90e639179c0f819a24f74cfe232963699c79b94c153e45f23a2bccac50373
+SHA512 (htslib-1.17.tar.bz2) = 624ab449d57713dab2d34399926c065f8cff8a45e6fbe68e0bb518c601421f587b613caeb095f8639b1d67cdb4a65d658c85f942173bcaa48da026fe15def5d3
+Size (htslib-1.17.tar.bz2) = 4619884 bytes