CVS commit: pkgsrc/math/R-vctrs

["Makoto Fujiwara" <mef%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   mef
Date:           Sun Dec 18 13:36:41 UTC 2022

Modified Files:
        pkgsrc/math/R-vctrs: Makefile distinfo

Log Message:
(math/R-vctrs) Updated 0.4.1 to 0.5.1

# vctrs 0.5.1

* Fix for CRAN checks.

# vctrs 0.5.0

* vctrs is now compliant with `-Wstrict-prototypes` as requested by CRAN
  (#1729).

* `vec_ptype2()` now consistently falls back to bare data frame in
  case of incompatible data frame subclasses. This is part of a
  general move towards relaxed coercion rules.

* Common type and cast errors now inherit from `"vctrs_error_ptype2"`
  and `"vctrs_error_cast"` respectively. They are still both
  subclasses from `"vctrs_error_incompatible_type"` (which used to be
  their most specific class and is now a parent class).

* New `list_all_size()` and `list_check_all_size()` to quickly determine if a
  list contains elements of a particular `size` (#1582).

* `list_unchop()` has gained empty `...` to force optional arguments to be
  named (#1715).

* `vec_rep_each(times = 0)` now works correctly with logical vectors that are
  considered unspecified and with named vectors (#1673).

* `list_of()` was relaxed to make it easier to combine. It is now
  coercible with `list()` (#1161). When incompatible `list_of()` types
  are combined, the result is now a bare `list()`.

  Following this change, the role of `list_of()` is mainly to carry
  type information for potential optimisations, rather than to
  guarantee a certain type throughout an analysis.

* `validate_list_of()` has been removed. It hasn't proven to be practically
  useful, and isn't used by any packages on CRAN (#1697).

* Directed calls to `vec_c()`, like `vec_c(.ptype = <type>)`, now mention the
  position of the problematic argument when there are cast errors (#1690).

* `list_unchop()` no longer drops names in some cases when `indices` were
  supplied (#1689).

* `"unique_quiet"` and `"universal_quiet"` are newly accepted by
  `vec_as_names(repair =)` and `vec_names2(repair =)`. These options exist to
  help users who call these functions indirectly, via another function which
  only exposes `repair` but not `quiet`. Specifying `repair = "unique_quiet"` is
  like specifying `repair = "unique", quiet = TRUE`. When the `"*_quiet"`
  options are used, any setting of `quiet` is silently overridden (@jennybc,
  #1629).

  `"unique_quiet"` and `"universal_quiet"` are also newly accepted for the name
  repair argument of several other functions that do not expose a `quiet`
  argument: `data_frame()`, `df_list()`, `vec_c()`, `list_unchop()`,
  `vec_interleave()`, `vec_rbind()`, and `vec_cbind()` (@jennybc, #1716).

* `list_unchop()` has gained `error_call` and `error_arg` arguments (#1641,
  #1692).

* `vec_c()` has gained `.error_call` and `.error_arg` arguments (#1641, #1692).

* Improved the performance of list-of common type methods (#1686, #875).

* The list-of method for `as_list_of()` now places the optional `.ptype`
  argument after the `...` (#1686).

* `vec_rbind()` now applies `base::c()` fallback recursively within
  packed df-cols (#1331, #1462, #1640).

* `vec_c()`, `vec_unchop()`, and `vec_rbind()` now proxy and restore
  recursively (#1107). This prevents `vec_restore()` from being called
  with partially filled vectors and improves performance (#1217,
  #1496).

* New `vec_any_missing()` for quickly determining if a vector has any missing
  values (#1672).

* `vec_equal_na()` has been renamed to `vec_detect_missing()` to align better
  with vctrs naming conventions. `vec_equal_na()` will stick around for a few
  minor versions, but has been formally soft-deprecated (#1672).

* `vec_c(outer = c(inner = 1))` now produces correct error messages (#522).

* If a data frame is returned as the proxy from `vec_proxy_equal()`,
  `vec_proxy_compare()`, or `vec_proxy_order()`, then the corresponding proxy
  function is now automatically applied recursively along all of the columns.
  Additionally, packed data frame columns will be unpacked, and 1 column data
  frames will be unwrapped. This ensures that the simplest possible types are
  provided to the native C algorithms, improving both correctness and
  performance (#1664).

* When used with record vectors, `vec_proxy_compare()` and `vec_proxy_order()`
  now call the correct proxy function while recursing over the fields (#1664).

* The experimental function `vec_list_cast()` has been removed from
  the package (#1382).

* Native classes like dates and datetimes now accept dimensions (#1290, #1329).

* `vec_compare()` now throws a more informative error when attempting to compare
  complex vectors (#1655).

* `vec_rep()` and friends gain `error_call`, `x_arg`, and `times_arg`
  arguments so they can be embedded in frontends (#1303).

* Record vectors now fail as expected when indexed along dimensions
  greater than 1 (#1295).

* `vec_order()` and `vec_sort()` now have `...` between the required and
  optional arguments to make them easier to extend (#1647).

* S3 vignette was extended to show how to make the polynomial class
  atomic instead of a list (#1030).

* The experimental `n` argument of `vec_restore()` has been
  removed. It was only used to inform on the size of data frames in
  case a bare list is restored. It is now expected that bare lists be
  initialised to data frame so that the size is carried through row
  attributes. This makes the generic simpler and fixes some
  performance issues (#650).

* The `anyNA()` method for `vctrs_vctr` (and thus `vctrs_list_of`) now
  supports the `recursive` argument (#1278).

* `vec_as_location()` and `num_as_location()` have gained a `missing = "remove"`
  option (#1595).

* `vec_as_location()` no longer matches `NA_character_` and `""` indices if
  those invalid names appear in `names` (#1489).

* `vec_unchop()` has been renamed to `list_unchop()` to better indicate that it
  requires list input. `vec_unchop()` will stick around for a few minor
  versions, but has been formally soft-deprecated (#1209).

* Lossy cast errors during scalar subscript validation now have the
  correct message (#1606).

* Fixed confusing error message with logical `[[` subscripts (#1608).

* New `vec_rank()` to compute various types of sample ranks (#1600).

* `num_as_location()` now throws the right error when there are out-of-bounds
  negative values and `oob = "extend"` and `negative = "ignore"` are set
  (#1614, #1630).

* `num_as_location()` now works correctly when a combination of `zero = "error"`
  and `negative = "invert"` are used (#1612).

* `data_frame()` and `df_list()` have gained `.error_call` arguments (#1610).

* `vec_locate_matches()` has gained an `error_call` argument (#1611).

* `"select"` and `"relocate"` have been added as valid subscript actions to
  support tidyselect and dplyr (#1596).

* `num_as_location()` has a new `oob = "remove"` argument to remove
  out-of-bounds locations (#1595).

* `vec_rbind()` and `vec_cbind()` now have `.error_call` arguments (#1597).

* `df_list()` has gained a new `.unpack` argument to optionally disable data
  frame unpacking (#1616).

* `vec_check_list(arg = "")` now throws the correct error (#1604).

* The `difftime` to `difftime` `vec_cast()` method now standardizes the internal
  storage type to double, catching potentially corrupt integer storage
  `difftime` vectors (#1602).

* `vec_as_location2()` and `vec_as_subscript2()` more correctly utilize their
  `call` arguments (#1605).

* `vec_count(sort = "count")` now uses a stable sorting method. This ensures
  that different keys with the same count are sorted in the order that they
  originally appeared in (#1588).

* Lossy cast error conditions now show the correct message when
  `conditionMessage()` is called on them (#1592).

* Fixed inconsistent reporting of conflicting inputs in
  `vec_ptype_common()` (#1570).

* `vec_ptype_abbr()` and `vec_ptype_full()` now suffix 1d arrays
  with `[1d]`.

* `vec_ptype_abbr()` and `vec_ptype_full()` methods are no longer
  inherited (#1549).

* `vec_cast()` now throws the correct error when attempting to cast a subclassed
  data frame to a non-data frame type (#1568).

* `vec_locate_matches()` now uses a more conservative heuristic when taking the
  joint ordering proxy. This allows it to work correctly with sf's sfc vectors
  and the classes from the bignum package (#1558).

* An sfc method for `vec_proxy_order()` was added to better support the sf
  package. These vectors are generally treated like list-columns even though
  they don't explicitly have a `"list"` class, and the `vec_proxy_order()`
  method now forwards to the list method to reflect that (#1558).

* `vec_proxy_compare()` now works correctly for raw vectors wrapped in `I()`.
  `vec_proxy_order()` now works correctly for raw and list vectors wrapped in
  `I()` (#1557).

# vctrs 0.4.2

* HTML documentation fixes for CRAN checks.


To generate a diff of this commit:
cvs rdiff -u -r1.5 -r1.6 pkgsrc/math/R-vctrs/Makefile
cvs rdiff -u -r1.6 -r1.7 pkgsrc/math/R-vctrs/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/R-vctrs/Makefile
diff -u pkgsrc/math/R-vctrs/Makefile:1.5 pkgsrc/math/R-vctrs/Makefile:1.6
--- pkgsrc/math/R-vctrs/Makefile:1.5    Thu May  5 02:09:10 2022
+++ pkgsrc/math/R-vctrs/Makefile        Sun Dec 18 13:36:41 2022
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.5 2022/05/05 02:09:10 mef Exp $
+# $NetBSD: Makefile,v 1.6 2022/12/18 13:36:41 mef Exp $
 
 R_PKGNAME=     vctrs
-R_PKGVER=      0.4.1
+R_PKGVER=      0.5.1
 
 MAINTAINER=    pkgsrc-users%NetBSD.org@localhost
 COMMENT=       Vector helpers
@@ -12,6 +12,7 @@ DEPENDS+=     R-cli-[0-9]*:../../devel/R-cli
 DEPENDS+=      R-digest>=0.6.25:../../security/R-digest
 DEPENDS+=      R-ellipsis>=0.2.0:../../math/R-ellipsis
 DEPENDS+=      R-glue>=1.4.1:../../devel/R-glue
+DEPENDS+=      R-lifecycle-[0-9]*:../../devel/R-lifecycle
 DEPENDS+=      R-rlang>=0.4.10:../../devel/R-rlang
 DEPENDS+=      R-zeallot>=0.1.0:../../math/R-zeallot
 
@@ -22,7 +23,7 @@ TEST_DEPENDS+=        R-dplyr-[0-9]*:../../math
 TEST_DEPENDS+= R-generics-[0-9]*:../../math/R-generics
 TEST_DEPENDS+= R-knitr-[0-9]*:../../print/R-knitr
 TEST_DEPENDS+= R-markdown-[0-9]*:../../textproc/R-markdown
-#EST_DEPENDS+= R-pkgdown-[0-9]*:../../devel/R-pkgdown
+TEST_DEPENDS+= R-pkgdown-[0-9]*:../../www/R-pkgdown
 TEST_DEPENDS+= R-rmarkdown-[0-9]*:../../textproc/R-rmarkdown
 TEST_DEPENDS+= R-testthat-[0-9]*:../../devel/R-testthat
 TEST_DEPENDS+= R-xml2-[0-9]*:../../textproc/R-xml2

Index: pkgsrc/math/R-vctrs/distinfo
diff -u pkgsrc/math/R-vctrs/distinfo:1.6 pkgsrc/math/R-vctrs/distinfo:1.7
--- pkgsrc/math/R-vctrs/distinfo:1.6    Thu May  5 02:09:10 2022
+++ pkgsrc/math/R-vctrs/distinfo        Sun Dec 18 13:36:41 2022
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.6 2022/05/05 02:09:10 mef Exp $
+$NetBSD: distinfo,v 1.7 2022/12/18 13:36:41 mef Exp $
 
-BLAKE2s (R/vctrs_0.4.1.tar.gz) = 18e00a3a10ac4089d68a89c212acb96e3e7c3fe6cd1d5c73c607258b668c042d
-SHA512 (R/vctrs_0.4.1.tar.gz) = 3b135106ac641774a08840f0487546d12ffba660ddc3c2ee3d3197e941bcab1c2b165d7babd8d31b60f954d4966352029776de77aa22f7e2f25f5e33f4024bc5
-Size (R/vctrs_0.4.1.tar.gz) = 916782 bytes
+BLAKE2s (R/vctrs_0.5.1.tar.gz) = c88e324b79a9cc9a6d502d0b55a57025c2376b20c61b751a52b47ff6b7a16ea6
+SHA512 (R/vctrs_0.5.1.tar.gz) = 22aed3ff1067d6e55c70fc2ad4743fae6d56d557d5f95d2520313f68a15082fdb5e8ae13799e932c7644a6f9cd3b6d6269196b3f4c8bb852cad3cdf16fc20a56
+Size (R/vctrs_0.5.1.tar.gz) = 959562 bytes