CVS commit: pkgsrc/math/R-DAAG

["Makoto Fujiwara" <mef%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   mef
Date:           Sun Dec 18 06:22:34 UTC 2022

Modified Files:
        pkgsrc/math/R-DAAG: Makefile distinfo

Log Message:
(math/R-DAAG) Updated 1.24 to 1.25.4

Changes in DAAG version 1.25.1-3
   o A number of URLs have been updated.
   o The bomregions2021 dataset updates the bomregions data
     to 2021.
   o The dataset mdbAVtJtoD, with monthly Murray-Darling
     basin data from January 1950 through to February 2022,
     has been added.

Changes in DAAG version 1.25

UPDATES
  o Vignettes sources are now R Markdown, with the
    format bookdown::html_document2 format combined
    with base_format: rmarkdown::html_vignette
    (This combination allows automatic numbering of
    figures, and cross-references.)
  o The `bomregions2018` dataset updates `bomregions`
    to include data through to 2018.  The updates
    `bomregions2012` and `bomregions2015` have been
    omitted.  A further column `avDMI` has been added,
    holding values (from 1960 onwards) of the Annual
    average (Indian) Dipole Mode Index.
  o Web links on what is now the `bomregions2018` help
    page have been updated.  The url in the DESCRIPTION
    file now links to the development version of DAAG
    on the gitlab site.
  o The `head.injury` dataset (which was a copy of the
    `headInjury` dataset) has been removed.
  o Help pages for related data sets have, in several
    cases, been combined.

                 Changes in DAAG version 1.24-1

NEW FEATURES
  o The dataset coralPval, holding 3072 p-values from a gene
    expression array comparison between post- and pre-settlement
    coral larvae, has been added.
  o The dataset bomregions2015 (updates bomregions to include data
    up to 2015) has been added.
  o The dataset lognihills, which replaces values in all 4 columns
    of nihills by log(values), has been added. Column names are
    logdist, logclimb, logtime and logtimef.
  o The generic function sumry(), with a method and print method
    for glm (but not other) objects, has been added.
  o The function DAAGtheme(), used to generate themes for use in
    an intended 4th edition of Data Analysis and Graphics Using R,
    has been added.
  o The functions CVlm() (alias cv.lm()), simulateLinear(),
    qreference() and sampdist() all now return lattice objects.
    If the result is returned to the command line, the graph is
    plotted just as before.

BUG FIXES
  o A line that subtracted 1 from the bottom and top margins,
    causing an error if the margin was already set to < 1, was
    removed from onetPermutation(), twot() and twotPermutation().
  o Code has been amended so that term labels ('term.labels') are
    given by attr(obj$terms, "term.labels").  The code now
    replaced expected to find 'term.labels' among the attributes
    of the summary object; this would have failed starting
    several R releases back.


To generate a diff of this commit:
cvs rdiff -u -r1.16 -r1.17 pkgsrc/math/R-DAAG/Makefile
cvs rdiff -u -r1.12 -r1.13 pkgsrc/math/R-DAAG/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/R-DAAG/Makefile
diff -u pkgsrc/math/R-DAAG/Makefile:1.16 pkgsrc/math/R-DAAG/Makefile:1.17
--- pkgsrc/math/R-DAAG/Makefile:1.16    Sun Sep 20 21:58:36 2020
+++ pkgsrc/math/R-DAAG/Makefile Sun Dec 18 06:22:34 2022
@@ -1,17 +1,17 @@
-# $NetBSD: Makefile,v 1.16 2020/09/20 21:58:36 mef Exp $
+# $NetBSD: Makefile,v 1.17 2022/12/18 06:22:34 mef Exp $
 
 R_PKGNAME=     DAAG
-R_PKGVER=      1.24
-CATEGORIES=    math
+R_PKGVER=      1.25.4
 
 MAINTAINER=    pkgsrc-users%NetBSD.org@localhost
 COMMENT=       Data analysis and graphics data and functions
 LICENSE=       gnu-gpl-v3
 
 DEPENDS+=      R-latticeExtra>=0.6.26:../../graphics/R-latticeExtra
+DEPENDS+=      R-Rdpack-[0-9]*:../../textproc/R-Rdpack
+
+# Packages suggested but not available: 'leaps', 'oz', 'bookdown'
 
-# Packages suggested but not available:
-# 'leaps', 'oz'
 TEST_DEPENDS+= R-lme4-[0-9]*:../../math/R-lme4
 TEST_DEPENDS+= R-quantreg-[0-9]*:../../math/R-quantreg
 TEST_DEPENDS+= R-randomForest-[0-9]*:../../math/R-randomForest

Index: pkgsrc/math/R-DAAG/distinfo
diff -u pkgsrc/math/R-DAAG/distinfo:1.12 pkgsrc/math/R-DAAG/distinfo:1.13
--- pkgsrc/math/R-DAAG/distinfo:1.12    Tue Oct 26 10:55:21 2021
+++ pkgsrc/math/R-DAAG/distinfo Sun Dec 18 06:22:34 2022
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.12 2021/10/26 10:55:21 nia Exp $
+$NetBSD: distinfo,v 1.13 2022/12/18 06:22:34 mef Exp $
 
-BLAKE2s (R/DAAG_1.24.tar.gz) = 3bd8f7e14dc5ab9b151dc260e9d611020c3b514050d616eb1ab1f95f8275dd9f
-SHA512 (R/DAAG_1.24.tar.gz) = a4a8afedcffdfdf06dfe140c565e6a713c1f537447930f148ac9bae8fcf9bb3b95c5757c5b3a85535dd9b0e823113abe408f5d6bfdaff9854853c5ff342a371b
-Size (R/DAAG_1.24.tar.gz) = 1431281 bytes
+BLAKE2s (R/DAAG_1.25.4.tar.gz) = 09cc78606d01040ff10db9eec8d632bd31101d79b752ea0804d7f61af9e14da5
+SHA512 (R/DAAG_1.25.4.tar.gz) = f99538695a96b05defe6d76e14e2a35b72f23a114df68c997952f68b0708705b71b2d9f5e403e801dca83ed8e87f735b5facb211f33fa35048bf2a9deaab74fb
+Size (R/DAAG_1.25.4.tar.gz) = 1502555 bytes