CVS commit: pkgsrc/sysutils/R-ff

["Makoto Fujiwara" <mef%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   mef
Date:           Sun Dec 18 00:42:28 UTC 2022

Added Files:
        pkgsrc/sysutils/R-ff: DESCR Makefile distinfo

Log Message:
(sysutils/R-ff) import R-ff-4.0.7

The ff package provides data structures that are stored on disk but
behave (almost) as if they were in RAM by transparently mapping only a
section (pagesize) in main memory - the effective virtual memory
consumption per ff object.

ff supports R's standard atomic data types 'double', 'logical', 'raw'
and 'integer' and non-standard atomic types boolean (1 bit),
quad (2 bit unsigned), nibble (4 bit unsigned), byte (1 byte signed
with NAs), ubyte (1 byte unsigned), short (2 byte signed with NAs),
ushort (2 byte unsigned), single (4 byte float with NAs).

For example 'quad' allows efficient storage of genomic data as
an 'A','T','G','C' factor. The unsigned types support 'circular'
arithmetic.


To generate a diff of this commit:
cvs rdiff -u -r0 -r1.1 pkgsrc/sysutils/R-ff/DESCR \
    pkgsrc/sysutils/R-ff/Makefile pkgsrc/sysutils/R-ff/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Added files:

Index: pkgsrc/sysutils/R-ff/DESCR
diff -u /dev/null pkgsrc/sysutils/R-ff/DESCR:1.1
--- /dev/null   Sun Dec 18 00:42:28 2022
+++ pkgsrc/sysutils/R-ff/DESCR  Sun Dec 18 00:42:28 2022
@@ -0,0 +1,14 @@
+The ff package provides data structures that are stored on disk but
+behave (almost) as if they were in RAM by transparently mapping only a
+section (pagesize) in main memory - the effective virtual memory
+consumption per ff object.
+
+ff supports R's standard atomic data types 'double', 'logical', 'raw'
+and 'integer' and non-standard atomic types boolean (1 bit),
+quad (2 bit unsigned), nibble (4 bit unsigned), byte (1 byte signed
+with NAs), ubyte (1 byte unsigned), short (2 byte signed with NAs),
+ushort (2 byte unsigned), single (4 byte float with NAs).
+
+For example 'quad' allows efficient storage of genomic data as
+an 'A','T','G','C' factor. The unsigned types support 'circular'
+arithmetic.
Index: pkgsrc/sysutils/R-ff/Makefile
diff -u /dev/null pkgsrc/sysutils/R-ff/Makefile:1.1
--- /dev/null   Sun Dec 18 00:42:28 2022
+++ pkgsrc/sysutils/R-ff/Makefile       Sun Dec 18 00:42:28 2022
@@ -0,0 +1,18 @@
+# $NetBSD: Makefile,v 1.1 2022/12/18 00:42:28 mef Exp $
+
+R_PKGNAME=     ff
+R_PKGVER=      4.0.7
+CATEGORIES=    sysutils
+
+MAINTAINER=    pkgsrc-users%NetBSD.org@localhost
+COMMENT=       Fast Access Functions for Large Data on Disk
+LICENSE=       gnu-gpl-v3 OR gnu-gpl-v2        # See also LICENSE file
+
+DEPENDS+=      R-bit>=4.0.0:../../devel/R-bit
+
+TEST_DEPENDS+= R-biglm-[0-9]*:../../sysutils/R-biglm
+
+USE_LANGUAGES= c c++
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"
Index: pkgsrc/sysutils/R-ff/distinfo
diff -u /dev/null pkgsrc/sysutils/R-ff/distinfo:1.1
--- /dev/null   Sun Dec 18 00:42:28 2022
+++ pkgsrc/sysutils/R-ff/distinfo       Sun Dec 18 00:42:28 2022
@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.1 2022/12/18 00:42:28 mef Exp $
+
+BLAKE2s (R/ff_4.0.7.tar.gz) = 4da003bda690a300f429943141f268dc2d9a2abcbf177836fb107ffbbb669737
+SHA512 (R/ff_4.0.7.tar.gz) = 79b4683e6bb0c81322d8359196e9b4ac34cd41718449ea1b608d072690323592b2a166f0b50eefe825bb3579c020ccb0f7b368754ae25b31d64998cc3f819cb4
+Size (R/ff_4.0.7.tar.gz) = 330258 bytes