CVS commit: pkgsrc/math/py-scipy

["Adam Ciarcinski" <adam%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   adam
Date:           Mon Oct 24 18:18:15 UTC 2022

Modified Files:
        pkgsrc/math/py-scipy: Makefile distinfo

Log Message:
py-scipy: updated to 1.9.3

Issues closed for 1.9.3

scipy.interpolate.UnivariateSpline segfault
BUG: multivariate_normal returns a pdf for values outside its...
BUG: stats: inconsistency in docs and behavior of gmean and hmean
running scipy.interpolate.tests.test_fitpack::test_bisplev_integer_overflow...
test_bisplev_integer_overflow: Segmentation fault (core dumped)
Bug: setting iprint=0 hides all output from fmin_l_bfgs_b, but...
\`scipy.stats.mood\` does not correct for ties
ks_2samp throws \`RuntimeWarning: overflow encountered in double_scalars\`
\`shgo\` error since scipy 1.8.0.dev0+1529.803e52d
Input data validation for RectSphereBivariateSpline
BUG: binom.pmf - RuntimeWarning: divide by zero
BUG: scipy.optimize.minimize: Powell's method function evaluated...
BUG: lombscargle fails if argument is a view
BUG: Possible bug when using winsorize on pandas data instead...
BUG: stats.ttest_ind returns wrong p-values with permutations
odr.Model default meta value fails with __getattr__
BUG: Error in error message for incorrect sample dimension in...
BUG: dimension of isuppz in syevr is mistranslated
BUG: \`KDTree\`'s optional argument \`eps\` seems to have no...
dtype not preserved with operations on sparse arrays
BUG: \`stats.fit\` on \`boltzmann\` expects \`bound\` for \`lambda\`,...
BUG: Small oversight in sparse.linalg.lsmr?
BUG: Build failure due to problems with shebang line in cythoner.py
BUG: stats.rayleigh.fit: returns \`loc\` that is inconsistent...
BUG? Incorrect branch in \`LAMV\` / \`_specfunc.lamv\`
DOC: keepdims in stats.mode is incorrectly documented

Pull requests for 1.9.3

BUG: multivariate_normal returns a pdf for values outside its...
Bug: setting iprint=0 hides all output from fmin_l_bfgs_b, but...
BUG: stats: Reformulate loggamma._rvs to handle c << 1.
BUG: fix out-of-bound evaluations in optimize.minimize, powell...
BUG: fix powell evaluated outside limits
BUG: fix stats.rv_histogram for non-uniform bins
stats.mood: correct for when ties are present
BUG: fix a crash in \`fpknot\`
MAINT: stats: fix _contains_nan on Pandas Series
Fix ttest permutations
MAINT: fix SHGO extra arguments
BUG: Fix error in error message for incorrect sample dimension...
MAINT: stats.ks_2samp: always emit warning when exact method...
BUG: fix syevr series segfault by explicitly specifying operator...
BUG: optimize: Fix differential_evolution error message.
FIX: \`odr.Model\` error with default \`meta\` value
FIX: stats: ignore divide-by-zero warnings from Boost binom impl
MAINT: stats.vonmises: wrap rvs to -pi, pi interval
BUG: eps param no effect fixed
MAINT: Ensure Pythran input for lombscargle are contiguous
Detect integer overflow in bivariate splines in fitpackmodule.c,...
BUG: sparse: Fix indexing sparse matrix with empty index arguments.
FIX: spurious divide error with \`gmean\`
BUG: fix mutable data types as default arguments in \`ord.{Data,RealData}\`
MAINT: stats.boltzmann: correct _shape_info typo
BUG: interpolate: sanity check x and y in make_interp_spline(x,...
MAINT: avoid \`func_data\`, it conflicts with system header on...
BUG: interpolate: work array sizes for RectSphereBivariateSpline
BUG: linalg: Fix the XSLOW test test_sgesdd_lwork_bug_workaround()
MAINT: fix small LSMR problem
MAINT: stats.rayleigh: enforce constraint on location
FIX: special: use intended branching for \`lamv\` implementation
MAINT: stats.rv_discrete.pmf: should be zero at non-integer argument
REL: Prep for SciPy 1.9.3
BUG: special: Fix two XSLOW test failures.
MAINT: update meson.build to make it work on IBM i system
BLD: fix issue with incomplete threads dependency handling
Keepdims incorrectly documneted fix
MAINT: Handle numpy's deprecation of accepting out-of-bound integers.
BLD: fix invalid shebang for build helper script


To generate a diff of this commit:
cvs rdiff -u -r1.62 -r1.63 pkgsrc/math/py-scipy/Makefile
cvs rdiff -u -r1.39 -r1.40 pkgsrc/math/py-scipy/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/py-scipy/Makefile
diff -u pkgsrc/math/py-scipy/Makefile:1.62 pkgsrc/math/py-scipy/Makefile:1.63
--- pkgsrc/math/py-scipy/Makefile:1.62  Mon Oct 10 08:46:13 2022
+++ pkgsrc/math/py-scipy/Makefile       Mon Oct 24 18:18:15 2022
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.62 2022/10/10 08:46:13 adam Exp $
+# $NetBSD: Makefile,v 1.63 2022/10/24 18:18:15 adam Exp $
 
-DISTNAME=      scipy-1.9.2
+DISTNAME=      scipy-1.9.3
 PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
 CATEGORIES=    math python
 MASTER_SITES=  ${MASTER_SITE_PYPI:=s/scipy/}

Index: pkgsrc/math/py-scipy/distinfo
diff -u pkgsrc/math/py-scipy/distinfo:1.39 pkgsrc/math/py-scipy/distinfo:1.40
--- pkgsrc/math/py-scipy/distinfo:1.39  Mon Oct 10 08:46:13 2022
+++ pkgsrc/math/py-scipy/distinfo       Mon Oct 24 18:18:15 2022
@@ -1,8 +1,8 @@
-$NetBSD: distinfo,v 1.39 2022/10/10 08:46:13 adam Exp $
+$NetBSD: distinfo,v 1.40 2022/10/24 18:18:15 adam Exp $
 
-BLAKE2s (scipy-1.9.2.tar.gz) = fc43dfca80904dc1521960efad03ebc2564580caa3fd0fdd2093025d9eeaa32c
-SHA512 (scipy-1.9.2.tar.gz) = 5f8667aa66aa0b5fad689d960f742874ce09f830bfd5aa241917526f153fbc09c7f709bc84113f83283fcbb8a47113eb215478d9c3473f76d8f7dbf0989429a2
-Size (scipy-1.9.2.tar.gz) = 42068300 bytes
+BLAKE2s (scipy-1.9.3.tar.gz) = a36ff01b49b034093dfdd43040a7bd1228fb5fbe823852f7fc4413d60e4c637e
+SHA512 (scipy-1.9.3.tar.gz) = 119f9a5e1ce3b4268ba38a0eb82dff78837593d9a5c5e464663925a4b3b1de060201fe568236e19ed0996a045754333c580e181c4cdec2cc707e57060f59364e
+Size (scipy-1.9.3.tar.gz) = 42075414 bytes
 SHA1 (patch-scipy_spatial_ckdtree_src_ckdtree__decl.h) = ad0e4a79af2a3b0667e61f205f5b8453ea440498
 SHA1 (patch-scipy_special___logit.h) = c729c2b73de00cad4c9ad834a79b80dea7b05af3
 SHA1 (patch-scipy_special___round.h) = 42249d147057d3ee34c58d1d4806bce6128cafd2