CVS commit: pkgsrc/math/R-broom

To: pkgsrc-changes%NetBSD.org@localhost
Subject: CVS commit: pkgsrc/math/R-broom
From: "Makoto Fujiwara" <mef%netbsd.org@localhost>
Date: Thu, 5 May 2022 01:58:35 +0000

Module Name:    pkgsrc
Committed By:   mef
Date:           Thu May  5 01:58:35 UTC 2022

Modified Files:
        pkgsrc/math/R-broom: Makefile distinfo

Log Message:
(math/R-broom) Updated 0.7.9 to 0.8.0

# broom 0.8.0
-------------------------------------------
This update  makes significant improvements to  documentation, fixes a
number of bugs,  and brings the development flow of  the package up to
date with other packages in the tidymodels.

In the big picture, this release:

* Makes many improvements to documentation:

     - All tidiers now have example code demonstrating usage in their
       documentation. Tidiers for base packages as well as selected
       others also include sample code for visualization of results
       with ggplot2.

     - Code examples in the documentation largely now follow
       consistent style---these changes were made largely to reflect
       the tidyverse style guide, addressing spacing, object naming,
       and commenting, among other things.

     - Examples previously marked with `\dontrun` or `\donttest` have
       been workshopped to run reliably.  * Clarifies errors and
       warnings for deprecated and un-maintained tidiers.  * Ensures
       that tidiers are placed in files named according to the
       model-supplying package rather than the model object class for
       easier navigability of the source code.

### Bug fixes and other improvements

* Fix `glance.fixest` error when model includes only fixed effects and
  no regressors (`#1018` by `@arcruz0`, `#1088` by
  `@vincentarelbundock`).

* Address excessive messaging from `tidy.speedlm` (`#1084` by
  `@cgoo4`, `#1087` by `@vincentarelbundock`).

* Add `nobs` column to the output of `glance.svyglm` (`#1085` by
  `@fschaffner`, `#1086` by `@vincentarelbundock`).

* Ensure `tidy.prcomp` description entries use consistent punctuation
  (`#1072` by `@PursuitOfDataScience`).

* Address breaking changes in `glance.fixest` and `tidy.btergm`.

* Simplify handling of `MASS::polr` output in the corresponding `tidy`
  and `augment` methods.

* Align continuous integration with current standards in tidymodels
  packages.

# broom 0.7.12
-------------------------------------------
Nearly identical source to broom 0.7.11—updates the maintainer email
address to an address listed in other CRAN packages maintained by the
same person.

# broom 0.7.11
-------------------------------------------
* Addressed issue with the ordering of original observations in
  `augment.rqs`. Now function preserves the original `data.frame`
  names also when the input `data.frame` only has one column (`#1052`
  by `@ilapros`).

* Addressed warning from `tidy.rma` when `x$ddf` has length greater
  than 1 (`#1064` by `@wviechtb`).

* Fix errors in `glance.lavaan` in anticipation of upcoming `tidyr`
  release (`#1067` by `@DavisVaughan`).

* Corrected the confidence interval in `tidy.crr()`. The
  `tidy.crr(conf.level=)` argument was previously ignored (`#1068` by
  `@ddsjoberg`).

# broom 0.7.10
-------------------------------------------
* Clarifies error when `pysch::mediate` output is dispatched to
  `tidy.mediate` (`#1037` by `@LukasWallrich`).

* Allows user to specify confidence level for `tidy.rma` (`#1041` by
  `@TarenSanders`)

* Clarifies documentation related to usage of `augment_columns()`;
  most package users should use `augment()` in favor of
  `augment_columns()`. See `?augment_columns` for more details.

* Extends support for `emmeans` by fixing non-standard column names in
  case of asymptotically derived inferential statistics. (`#1046` by
  `@crsh`)

* Fixes use of index columns in `augment.mlogit` and adds `.resid`
column to output. (`#1045`, `#1053`, `#1055`, and `#1056` by
`@jamesrrae` and `@gregmacfarlane`)

* Correct column naming of standard error measures in
  `glance.survfit()`.

* Various bug fixes and improvements to documentation.


To generate a diff of this commit:
cvs rdiff -u -r1.1 -r1.2 pkgsrc/math/R-broom/Makefile
cvs rdiff -u -r1.3 -r1.4 pkgsrc/math/R-broom/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/R-broom/Makefile
diff -u pkgsrc/math/R-broom/Makefile:1.1 pkgsrc/math/R-broom/Makefile:1.2
--- pkgsrc/math/R-broom/Makefile:1.1    Sat Sep 18 23:05:34 2021
+++ pkgsrc/math/R-broom/Makefile        Thu May  5 01:58:35 2022
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.1 2021/09/18 23:05:34 mef Exp $
+# $NetBSD: Makefile,v 1.2 2022/05/05 01:58:35 mef Exp $
 
 R_PKGNAME=     broom
-R_PKGVER=      0.7.9
+R_PKGVER=      0.8.0
 
 MAINTAINER=    pkgsrc-users%NetBSD.org@localhost
 COMMENT=       Convert Statistical Objects into Tidy Tibbles
@@ -17,31 +17,83 @@ DEPENDS+=   R-generics>=0.0.2:../../math/R
 DEPENDS+=      R-tibble>=3.0.0:../../math/R-tibble
 DEPENDS+=      R-tidyr>=1.1.3:../../math/R-tidyr
 DEPENDS+=      R-stringr>=1.4.0:../../textproc/R-stringr
+DEPENDS+=      R-ggplot2-[0-9]*:../../graphics/R-ggplot2
 
-# Packages suggested but not available:
-#   'AER', 'AUC', 'bbmle', 'betareg', 'biglm', 'binGroup', 'btergm',
-#   'caret', 'cmprsk', 'coda', 'drc', 'emmeans', 'epiR', 'ergm',
-#   'fixest', 'gam', 'gee', 'geepack', 'glmnet', 'glmnetUtils', 'gmm',
-#   'irlba', 'joineRML', 'Kendall', 'ks', 'Lahman', 'lavaan', 'leaps',
-#   'lfe', 'lm.beta', 'lmodel2',  'lsmeans', 'margins',
-#   'mclust', 'mediation', 'metafor', 'mfx', 'mlogit', 'modeldata',
-#   'modeltests', 'muhaz', 'multcomp', 'network', 'orcutt', 'ordinal',
-#   'plm', 'poLCA', 'psych', 'quantreg', 'robust', 'robustbase',
-#   'rsample', 'spdep', 'spatialreg', 'speedglm', 'systemfit',
-#   'tseries', 'vars'
-
-
-TEST_DEPENDS+= R-maps-[0-9]*:../../geography/R-maps
-TEST_DEPENDS+= R-maptools-[0-9]*:../../geography/R-maptools
-TEST_DEPENDS+= R-rgeos-[0-9]*:../../geography/R-rgeos
+#EST_DEPENDS+= R-AER-[0-9]*:
 TEST_DEPENDS+= R-akima-[0-9]*:../../math/R-akima
-TEST_DEPENDS+= R-lmtest-[0-9]*:../../math/R-lmtest
+#EST_DEPENDS+= R-AUC-[0-9]*:
+TEST_DEPENDS+= R-bbmle-[0-9]*:../../math/R-bbmle
+#EST_DEPENDS+= R-betareg-[0-9]*:
+#EST_DEPENDS+= R-biglm-[0-9]*:
+#EST_DEPENDS+= R-binGroup-[0-9]*:
+#EST_DEPENDS+= R-btergm-[0-9]*:
 TEST_DEPENDS+= R-car-[0-9]*:../../math/R-car
-TEST_DEPENDS+= R-survey-[0-9]*:../../math/R-survey
-TEST_DEPENDS+= R-sandwich-[0-9]*:../../math/R-sandwich
-TEST_DEPENDS+= R-zoo-[0-9]*:../../math/R-zoo
+#EST_DEPENDS+= R-caret-[0-9]*:
+#EST_DEPENDS+= R-cmprsk-[0-9]*:
+TEST_DEPENDS+= R-coda-[0-9]*:../../math/R-coda
+TEST_DEPENDS+= R-covr-[0-9]*:../../devel/R-covr
+#EST_DEPENDS+= R-drc-[0-9]*:
+TEST_DEPENDS+= R-e1071-[0-9]*:../../math/R-e1071
+#EST_DEPENDS+= R-emmeans-[0-9]*:
+#EST_DEPENDS+= R-epiR-[0-9]*:
+#EST_DEPENDS+= R-ergm-[0-9]*:
+#EST_DEPENDS+= R-fixest-[0-9]*:
+#EST_DEPENDS+= R-gam-[0-9]*:
+#EST_DEPENDS+= R-gee-[0-9]*:
+#EST_DEPENDS+= R-geepack-[0-9]*:
+#EST_DEPENDS+= R-glmnet-[0-9]*:
+#EST_DEPENDS+= R-glmnetUtils-[0-9]*:
+#EST_DEPENDS+= R-gmm-[0-9]*:
 TEST_DEPENDS+= R-Hmisc-[0-9]*:../../misc/R-Hmisc
+#EST_DEPENDS+= R-irlba-[0-9]*:
+#EST_DEPENDS+= R-joineRML-[0-9]*:
+#EST_DEPENDS+= R-Kendall-[0-9]*:
+TEST_DEPENDS+= R-knitr-[0-9]*:../../print/R-knitr
+#EST_DEPENDS+= R-ks-[0-9]*:
+#EST_DEPENDS+= R-Lahman-[0-9]*:
+#EST_DEPENDS+= R-lavaan-[0-9]*:
+#EST_DEPENDS+= R-leaps-[0-9]*:
+#EST_DEPENDS+= R-lfe-[0-9]*:
+#EST_DEPENDS+= R-lm.beta-[0-9]*:
+TEST_DEPENDS+= R-lme4-[0-9]*:../../math/R-lme4
+#EST_DEPENDS+= R-lmodel2-[0-9]*:
+TEST_DEPENDS+= R-lmtest-[0-9]*:../../math/R-lmtest
+#EST_DEPENDS+= R-lsmeans-[0-9]*:
+TEST_DEPENDS+= R-maptools-[0-9]*:../../geography/R-maptools
+#EST_DEPENDS+= R-margins-[0-9]*:
+#EST_DEPENDS+= R-mclust-[0-9]*:../../wip/R-mclust
+#EST_DEPENDS+= R-mediation-[0-9]*:
+#EST_DEPENDS+= R-metafor-[0-9]*:
+#EST_DEPENDS+= R-mfx-[0-9]*:
+#EST_DEPENDS+= R-mlogit-[0-9]*:
+#EST_DEPENDS+= R-modeldata-[0-9]*:
+#EST_DEPENDS+= R-modeltests-[0-9]*:
+#EST_DEPENDS+= R-muhaz-[0-9]*:
+#EST_DEPENDS+= R-multcomp-[0-9]*:
+#EST_DEPENDS+= R-network-[0-9]*:
+#EST_DEPENDS+= R-orcutt-[0-9]*:
+#EST_DEPENDS+= R-ordinal-[0-9]*:
+#EST_DEPENDS+= R-plm-[0-9]*:
+#EST_DEPENDS+= R-poLCA-[0-9]*:
+TEST_DEPENDS+= R-psych-[0-9]*:../../math/R-psych
+TEST_DEPENDS+= R-quantreg-[0-9]*:../../math/R-quantreg
+TEST_DEPENDS+= R-rgeos-[0-9]*:../../geography/R-rgeos
+TEST_DEPENDS+= R-rmarkdown-[0-9]*:../../textproc/R-rmarkdown
+#EST_DEPENDS+= R-robust-[0-9]*:
+TEST_DEPENDS+= R-robustbase-[0-9]*:../../math/R-robustbase
+#EST_DEPENDS+= R-rsample-[0-9]*:
+TEST_DEPENDS+= R-sandwich-[0-9]*:../../math/R-sandwich
+TEST_DEPENDS+= R-sp-[0-9]*:../../math/R-sp
+#EST_DEPENDS+= R-spdep-[0-9]*:
+#EST_DEPENDS+= R-spatialreg-[0-9]*:
+#EST_DEPENDS+= R-speedglm-[0-9]*:
 TEST_DEPENDS+= R-spelling-[0-9]*:../../textproc/R-spelling
+TEST_DEPENDS+= R-survey-[0-9]*:../../math/R-survey
+#EST_DEPENDS+= R-systemfit-[0-9]*:
+TEST_DEPENDS+= R-testthat-[0-9]*:../../devel/R-testthat
+TEST_DEPENDS+= R-tseries-[0-9]*:../../finance/R-tseries
+#EST_DEPENDS+= R-vars-[0-9]*:
+TEST_DEPENDS+= R-zoo-[0-9]*:../../math/R-zoo
 
 USE_LANGUAGES= # none
 

Index: pkgsrc/math/R-broom/distinfo
diff -u pkgsrc/math/R-broom/distinfo:1.3 pkgsrc/math/R-broom/distinfo:1.4
--- pkgsrc/math/R-broom/distinfo:1.3    Tue Oct 26 10:55:24 2021
+++ pkgsrc/math/R-broom/distinfo        Thu May  5 01:58:35 2022
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.3 2021/10/26 10:55:24 nia Exp $
+$NetBSD: distinfo,v 1.4 2022/05/05 01:58:35 mef Exp $
 
-BLAKE2s (R/broom_0.7.9.tar.gz) = 73195bbe7cd5ea7a2c7dba4364925b65a4fa10de93d3c633819544a068f993f1
-SHA512 (R/broom_0.7.9.tar.gz) = 3346882452c311ef61a313a0311d5e30d65dafb8a27622d6bbdfe413e71087fb129999326931c98ffa6ddd5046ae5b2ac609622f31c3ab205ccfda4eac8c803e
-Size (R/broom_0.7.9.tar.gz) = 631606 bytes
+BLAKE2s (R/broom_0.8.0.tar.gz) = 86dca640cd540d430c4659e7eb60b30c14b0fc0a73821e6e07ddc32738f828ab
+SHA512 (R/broom_0.8.0.tar.gz) = b9b0b7db1f151614f20fe42e7bfc34e1fc1aab1498e3280c67a530ba7972645694fb1638448827b14e70a56b9b743e51d7a3a7216c1f49067037ad837ce6e4fe
+Size (R/broom_0.8.0.tar.gz) = 640392 bytes

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