CVS commit: pkgsrc/math/py-tables

["Thomas Klausner" <wiz%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   wiz
Date:           Wed Jan  5 07:05:39 UTC 2022

Modified Files:
        pkgsrc/math/py-tables: Makefile PLIST distinfo

Log Message:
py-tables: update to 3.7.0.

This is a minor version of PyTables.  The main feature added is that
compatibility with Python 3.10, numpy 1.21 and HDF5 1.12 has been improved,
while support for Python 3.5 has been dropped.

The CI infrastructure has been moved to GitHub Actions.


To generate a diff of this commit:
cvs rdiff -u -r1.10 -r1.11 pkgsrc/math/py-tables/Makefile
cvs rdiff -u -r1.3 -r1.4 pkgsrc/math/py-tables/PLIST
cvs rdiff -u -r1.6 -r1.7 pkgsrc/math/py-tables/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/py-tables/Makefile
diff -u pkgsrc/math/py-tables/Makefile:1.10 pkgsrc/math/py-tables/Makefile:1.11
--- pkgsrc/math/py-tables/Makefile:1.10 Tue Jan  4 20:54:17 2022
+++ pkgsrc/math/py-tables/Makefile      Wed Jan  5 07:05:39 2022
@@ -1,8 +1,7 @@
-# $NetBSD: Makefile,v 1.10 2022/01/04 20:54:17 wiz Exp $
+# $NetBSD: Makefile,v 1.11 2022/01/05 07:05:39 wiz Exp $
 
-DISTNAME=      tables-3.6.1
+DISTNAME=      tables-3.7.0
 PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
-PKGREVISION=   2
 CATEGORIES=    math python
 MASTER_SITES=  ${MASTER_SITE_PYPI:=t/tables/}
 
@@ -16,10 +15,8 @@ PYSETUPBUILDARGS+=   --bzip2=${BUILDLINK_P
 PYSETUPBUILDARGS+=     --hdf5=${BUILDLINK_PREFIX.hdf5}
 PYSETUPBUILDARGS+=     --lzo=${BUILDLINK_PREFIX.lzo}
 
-DEPENDS+=      ${PYPKGPREFIX}-cython-[0-9]*:../../devel/py-cython
+DEPENDS+=      ${PYPKGPREFIX}-packaging-[0-9]*:../../devel/py-packaging
 DEPENDS+=      ${PYPKGPREFIX}-numexpr>=2.6.2:../../math/py-numexpr
-DEPENDS+=      ${PYPKGPREFIX}-mock>=2.0:../../devel/py-mock
-DEPENDS+=      ${PYPKGPREFIX}-six>=1.9.0:../../lang/py-six
 
 USE_LANGUAGES= c c++
 
@@ -32,8 +29,11 @@ post-install:
        ${MV} ptrepack ptrepack-${PYVERSSUFFIX} && \
        ${MV} pttree pttree-${PYVERSSUFFIX} || ${TRUE}
 
+# needs to be installed first
+# as of 3.7.0:
+# FAILED (errors=2, skipped=55)
 do-test:
-       cd ${WRKSRC}/tables/tests && ${PYTHONBIN} test_all.py
+       ${PYTHONBIN} -m tables.tests.test_all
 
 .include "../../archivers/bzip2/buildlink3.mk"
 .include "../../archivers/lzo/buildlink3.mk"

Index: pkgsrc/math/py-tables/PLIST
diff -u pkgsrc/math/py-tables/PLIST:1.3 pkgsrc/math/py-tables/PLIST:1.4
--- pkgsrc/math/py-tables/PLIST:1.3     Wed Nov 13 20:56:08 2019
+++ pkgsrc/math/py-tables/PLIST Wed Jan  5 07:05:39 2022
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.3 2019/11/13 20:56:08 adam Exp $
+@comment $NetBSD: PLIST,v 1.4 2022/01/05 07:05:39 wiz Exp $
 bin/pt2to3-${PYVERSSUFFIX}
 bin/ptdump-${PYVERSSUFFIX}
 bin/ptrepack-${PYVERSSUFFIX}
@@ -13,7 +13,11 @@ ${PYSITELIB}/${EGG_INFODIR}/top_level.tx
 ${PYSITELIB}/tables/__init__.py
 ${PYSITELIB}/tables/__init__.pyc
 ${PYSITELIB}/tables/__init__.pyo
+${PYSITELIB}/tables/_comp_bzip2.c
+${PYSITELIB}/tables/_comp_bzip2.pyx
 ${PYSITELIB}/tables/_comp_bzip2.so
+${PYSITELIB}/tables/_comp_lzo.c
+${PYSITELIB}/tables/_comp_lzo.pyx
 ${PYSITELIB}/tables/_comp_lzo.so
 ${PYSITELIB}/tables/array.py
 ${PYSITELIB}/tables/array.pyc
@@ -30,6 +34,7 @@ ${PYSITELIB}/tables/carray.pyo
 ${PYSITELIB}/tables/conditions.py
 ${PYSITELIB}/tables/conditions.pyc
 ${PYSITELIB}/tables/conditions.pyo
+${PYSITELIB}/tables/definitions.pxd
 ${PYSITELIB}/tables/description.py
 ${PYSITELIB}/tables/description.pyc
 ${PYSITELIB}/tables/description.pyo
@@ -54,6 +59,9 @@ ${PYSITELIB}/tables/flavor.pyo
 ${PYSITELIB}/tables/group.py
 ${PYSITELIB}/tables/group.pyc
 ${PYSITELIB}/tables/group.pyo
+${PYSITELIB}/tables/hdf5extension.c
+${PYSITELIB}/tables/hdf5extension.pxd
+${PYSITELIB}/tables/hdf5extension.pyx
 ${PYSITELIB}/tables/hdf5extension.so
 ${PYSITELIB}/tables/idxutils.py
 ${PYSITELIB}/tables/idxutils.pyc
@@ -64,6 +72,8 @@ ${PYSITELIB}/tables/index.pyo
 ${PYSITELIB}/tables/indexes.py
 ${PYSITELIB}/tables/indexes.pyc
 ${PYSITELIB}/tables/indexes.pyo
+${PYSITELIB}/tables/indexesextension.c
+${PYSITELIB}/tables/indexesextension.pyx
 ${PYSITELIB}/tables/indexesextension.so
 ${PYSITELIB}/tables/leaf.py
 ${PYSITELIB}/tables/leaf.pyc
@@ -71,7 +81,12 @@ ${PYSITELIB}/tables/leaf.pyo
 ${PYSITELIB}/tables/link.py
 ${PYSITELIB}/tables/link.pyc
 ${PYSITELIB}/tables/link.pyo
+${PYSITELIB}/tables/linkextension.c
+${PYSITELIB}/tables/linkextension.pyx
 ${PYSITELIB}/tables/linkextension.so
+${PYSITELIB}/tables/lrucacheextension.c
+${PYSITELIB}/tables/lrucacheextension.pxd
+${PYSITELIB}/tables/lrucacheextension.pyx
 ${PYSITELIB}/tables/lrucacheextension.so
 ${PYSITELIB}/tables/misc/__init__.py
 ${PYSITELIB}/tables/misc/__init__.pyc
@@ -130,6 +145,8 @@ ${PYSITELIB}/tables/scripts/pttree.pyo
 ${PYSITELIB}/tables/table.py
 ${PYSITELIB}/tables/table.pyc
 ${PYSITELIB}/tables/table.pyo
+${PYSITELIB}/tables/tableextension.c
+${PYSITELIB}/tables/tableextension.pyx
 ${PYSITELIB}/tables/tableextension.so
 ${PYSITELIB}/tables/tests/Table2_1_lzo_nrv2e_shuffle.h5
 ${PYSITELIB}/tables/tests/Tables_lzo1.h5
@@ -149,6 +166,7 @@ ${PYSITELIB}/tables/tests/check_leaks.py
 ${PYSITELIB}/tables/tests/common.py
 ${PYSITELIB}/tables/tests/common.pyc
 ${PYSITELIB}/tables/tests/common.pyo
+${PYSITELIB}/tables/tests/create-nested-type.c
 ${PYSITELIB}/tables/tests/create_backcompat_indexes.py
 ${PYSITELIB}/tables/tests/create_backcompat_indexes.pyc
 ${PYSITELIB}/tables/tests/create_backcompat_indexes.pyo
@@ -167,6 +185,7 @@ ${PYSITELIB}/tables/tests/matlab_file.ma
 ${PYSITELIB}/tables/tests/nested-type-with-gaps.h5
 ${PYSITELIB}/tables/tests/non-chunked-table.h5
 ${PYSITELIB}/tables/tests/oldflavor_numeric.h5
+${PYSITELIB}/tables/tests/out_of_order_types.h5
 ${PYSITELIB}/tables/tests/python2.h5
 ${PYSITELIB}/tables/tests/python3.h5
 ${PYSITELIB}/tables/tests/scalar.h5
@@ -292,6 +311,9 @@ ${PYSITELIB}/tables/unimplemented.pyo
 ${PYSITELIB}/tables/utils.py
 ${PYSITELIB}/tables/utils.pyc
 ${PYSITELIB}/tables/utils.pyo
+${PYSITELIB}/tables/utilsextension.c
+${PYSITELIB}/tables/utilsextension.pxd
+${PYSITELIB}/tables/utilsextension.pyx
 ${PYSITELIB}/tables/utilsextension.so
 ${PYSITELIB}/tables/vlarray.py
 ${PYSITELIB}/tables/vlarray.pyc

Index: pkgsrc/math/py-tables/distinfo
diff -u pkgsrc/math/py-tables/distinfo:1.6 pkgsrc/math/py-tables/distinfo:1.7
--- pkgsrc/math/py-tables/distinfo:1.6  Tue Oct 26 10:56:05 2021
+++ pkgsrc/math/py-tables/distinfo      Wed Jan  5 07:05:39 2022
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.6 2021/10/26 10:56:05 nia Exp $
+$NetBSD: distinfo,v 1.7 2022/01/05 07:05:39 wiz Exp $
 
-BLAKE2s (tables-3.6.1.tar.gz) = 4a1615c8c25736fc4b1c10f11b8f72552c417d2f35dc9e376cb56dc705202c8f
-SHA512 (tables-3.6.1.tar.gz) = 7f018b70251095049bce9075be4e19f72efba9d39121a35c4521f634b1dd5b81ab6de47df3bb44ad6b8b2dbdbff4e6d0985ad1a7b2f13b44f920c0935e5830ff
-Size (tables-3.6.1.tar.gz) = 4641089 bytes
+BLAKE2s (tables-3.7.0.tar.gz) = a49638994427991e7285e80cee2746ddf81078fb123ca6291325951b0e41c684
+SHA512 (tables-3.7.0.tar.gz) = eaa368d063b5fad87e6d0f9ab6f02da0b2a3542740a52fe8c2bb58e41121495d07b6d2710ad402a28891294aa61a11238c6a7e2cf2933a1bb11391b79cf4fd13
+Size (tables-3.7.0.tar.gz) = 8227955 bytes