CVS commit: pkgsrc/biology/htslib

["Jason Bacon" <bacon%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   bacon
Date:           Fri Dec 17 15:01:27 UTC 2021

Modified Files:
        pkgsrc/biology/htslib: Makefile PLIST buildlink3.mk distinfo

Log Message:
biology/htslib: Update to 1.14

Numerous fixes and enhancements since 1.12

Changes: https://github.com/samtools/htslib/releases/tag/1.14


To generate a diff of this commit:
cvs rdiff -u -r1.23 -r1.24 pkgsrc/biology/htslib/Makefile
cvs rdiff -u -r1.3 -r1.4 pkgsrc/biology/htslib/PLIST
cvs rdiff -u -r1.5 -r1.6 pkgsrc/biology/htslib/buildlink3.mk
cvs rdiff -u -r1.6 -r1.7 pkgsrc/biology/htslib/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/htslib/Makefile
diff -u pkgsrc/biology/htslib/Makefile:1.23 pkgsrc/biology/htslib/Makefile:1.24
--- pkgsrc/biology/htslib/Makefile:1.23 Wed Dec  8 16:03:23 2021
+++ pkgsrc/biology/htslib/Makefile      Fri Dec 17 15:01:27 2021
@@ -1,7 +1,6 @@
-# $NetBSD: Makefile,v 1.23 2021/12/08 16:03:23 adam Exp $
+# $NetBSD: Makefile,v 1.24 2021/12/17 15:01:27 bacon Exp $
 
-DISTNAME=      htslib-1.12
-PKGREVISION=   4
+DISTNAME=      htslib-1.14
 CATEGORIES=    biology
 # Github-generated distfiles are incomplete, use custom tarballs instead
 MASTER_SITES=  https://github.com/samtools/htslib/releases/download/${PKGVERSION_NOREV}/

Index: pkgsrc/biology/htslib/PLIST
diff -u pkgsrc/biology/htslib/PLIST:1.3 pkgsrc/biology/htslib/PLIST:1.4
--- pkgsrc/biology/htslib/PLIST:1.3     Sat Mar 20 18:17:07 2021
+++ pkgsrc/biology/htslib/PLIST Fri Dec 17 15:01:27 2021
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.3 2021/03/20 18:17:07 bacon Exp $
+@comment $NetBSD: PLIST,v 1.4 2021/12/17 15:01:27 bacon Exp $
 bin/bgzip
 bin/htsfile
 bin/tabix

Index: pkgsrc/biology/htslib/buildlink3.mk
diff -u pkgsrc/biology/htslib/buildlink3.mk:1.5 pkgsrc/biology/htslib/buildlink3.mk:1.6
--- pkgsrc/biology/htslib/buildlink3.mk:1.5     Sat Mar 20 18:17:07 2021
+++ pkgsrc/biology/htslib/buildlink3.mk Fri Dec 17 15:01:27 2021
@@ -1,12 +1,12 @@
-# $NetBSD: buildlink3.mk,v 1.5 2021/03/20 18:17:07 bacon Exp $
+# $NetBSD: buildlink3.mk,v 1.6 2021/12/17 15:01:27 bacon Exp $
 
 BUILDLINK_TREE+=       htslib
 
 .if !defined(HTSLIB_BUILDLINK3_MK)
 HTSLIB_BUILDLINK3_MK:=
 
-BUILDLINK_API_DEPENDS.htslib+= htslib>=1.10.2
-BUILDLINK_ABI_DEPENDS.htslib+= htslib>=1.10.2
+BUILDLINK_API_DEPENDS.htslib+= htslib>=1.14
+BUILDLINK_ABI_DEPENDS.htslib+= htslib>=1.14
 BUILDLINK_PKGSRCDIR.htslib?=   ../../biology/htslib
 
 .endif # HTSLIB_BUILDLINK3_MK

Index: pkgsrc/biology/htslib/distinfo
diff -u pkgsrc/biology/htslib/distinfo:1.6 pkgsrc/biology/htslib/distinfo:1.7
--- pkgsrc/biology/htslib/distinfo:1.6  Tue Oct 26 10:03:40 2021
+++ pkgsrc/biology/htslib/distinfo      Fri Dec 17 15:01:27 2021
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.6 2021/10/26 10:03:40 nia Exp $
+$NetBSD: distinfo,v 1.7 2021/12/17 15:01:27 bacon Exp $
 
-BLAKE2s (htslib-1.12.tar.bz2) = 401ede511b47d29b4e3771f0fb32ef5b8265b38d10158d8c8fc645d3504c8fe8
-SHA512 (htslib-1.12.tar.bz2) = a810c646561f5c8b3a19b73ac22ec5f25b04d4e88e1314988881a8120c54106591d1d65aa708bbe2608f0065ca8abe92bdd70ef59a0dd0cdf63ff45c10957092
-Size (htslib-1.12.tar.bz2) = 4094458 bytes
+BLAKE2s (htslib-1.14.tar.bz2) = ef0d9f8c4e1dbf4102019cff4c715fb4033f66be0e9882c17c735ec356c6d392
+SHA512 (htslib-1.14.tar.bz2) = 97893a067f368668a5e0b704ca6a6399458e30283f774b42dae752b5115b19eda9112a75ba3578109be587c345ef15b3a3fc8245191287f2cd4108ea8a8bec61
+Size (htslib-1.14.tar.bz2) = 4136564 bytes