CVS commit: pkgsrc/biology/ad2vcf

["Jason Bacon" <bacon%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   bacon
Date:           Tue Dec 14 19:02:21 UTC 2021

Modified Files:
        pkgsrc/biology/ad2vcf: Makefile PLIST distinfo

Log Message:
biology/ad2vcf: Update to 0.1.4

Updates for evolving libxtend and biolibc APIs
Add --version flag
Filter out unused SAM fields on input
Numerous other minor fixes and enhancements

Changes: https://github.com/auerlab/ad2vcf/releases/tag/0.1.4


To generate a diff of this commit:
cvs rdiff -u -r1.3 -r1.4 pkgsrc/biology/ad2vcf/Makefile \
    pkgsrc/biology/ad2vcf/PLIST
cvs rdiff -u -r1.5 -r1.6 pkgsrc/biology/ad2vcf/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/ad2vcf/Makefile
diff -u pkgsrc/biology/ad2vcf/Makefile:1.3 pkgsrc/biology/ad2vcf/Makefile:1.4
--- pkgsrc/biology/ad2vcf/Makefile:1.3  Sat Aug 28 18:39:10 2021
+++ pkgsrc/biology/ad2vcf/Makefile      Tue Dec 14 19:02:21 2021
@@ -1,21 +1,21 @@
-# $NetBSD: Makefile,v 1.3 2021/08/28 18:39:10 bacon Exp $
+# $NetBSD: Makefile,v 1.4 2021/12/14 19:02:21 bacon Exp $
 
-DISTNAME=      ad2vcf-0.1.3.31
+DISTNAME=      ad2vcf-0.1.4
 CATEGORIES=    biology
 MASTER_SITES=  ${MASTER_SITE_GITHUB:=auerlab/}
-GITHUB_TAG=    2073297895dbeb512a83a77f8a05636aa07e6b13
 
 MAINTAINER=    bacon%NetBSD.org@localhost
 HOMEPAGE=      https://github.com/auerlab/ad2vcf
 COMMENT=       Add allelic depth info from a SAM stream to a VCF file
 LICENSE=       2-clause-bsd
 
+MAKE_ENV+=     VERSION=${PKGVERSION}
+
 pre-build:
        cd ${WRKSRC} && ${MAKE} PREFIX=${PREFIX} depend
 
 do-test:
        cd ${WRKSRC}/Test && ./run-test.sh
 
-.include "../../devel/libxtend/buildlink3.mk"
 .include "../../biology/biolibc/buildlink3.mk"
 .include "../../mk/bsd.pkg.mk"
Index: pkgsrc/biology/ad2vcf/PLIST
diff -u pkgsrc/biology/ad2vcf/PLIST:1.3 pkgsrc/biology/ad2vcf/PLIST:1.4
--- pkgsrc/biology/ad2vcf/PLIST:1.3     Sat Aug 28 18:39:10 2021
+++ pkgsrc/biology/ad2vcf/PLIST Tue Dec 14 19:02:21 2021
@@ -1,3 +1,3 @@
-@comment $NetBSD: PLIST,v 1.3 2021/08/28 18:39:10 bacon Exp $
+@comment $NetBSD: PLIST,v 1.4 2021/12/14 19:02:21 bacon Exp $
 bin/ad2vcf
 man/man1/ad2vcf.1

Index: pkgsrc/biology/ad2vcf/distinfo
diff -u pkgsrc/biology/ad2vcf/distinfo:1.5 pkgsrc/biology/ad2vcf/distinfo:1.6
--- pkgsrc/biology/ad2vcf/distinfo:1.5  Tue Oct 26 10:03:36 2021
+++ pkgsrc/biology/ad2vcf/distinfo      Tue Dec 14 19:02:21 2021
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.5 2021/10/26 10:03:36 nia Exp $
+$NetBSD: distinfo,v 1.6 2021/12/14 19:02:21 bacon Exp $
 
-BLAKE2s (ad2vcf-0.1.3.31-2073297895dbeb512a83a77f8a05636aa07e6b13.tar.gz) = 444f3e9e642896d444bf42eab9db0b842e4be39d227a711d77904786084227b6
-SHA512 (ad2vcf-0.1.3.31-2073297895dbeb512a83a77f8a05636aa07e6b13.tar.gz) = 
55ac1c771eb1c7e158a0195f7b2ad787206dc7639846a6e645a0137cc32c74c36441c266ffe3ac9d03398dad3f3c58c2f246066c002df2b740d97d8526d2431f
-Size (ad2vcf-0.1.3.31-2073297895dbeb512a83a77f8a05636aa07e6b13.tar.gz) = 15205 bytes
+BLAKE2s (ad2vcf-0.1.4.tar.gz) = d1177710c60983ce0ad2ec954f98ddd87c1a23619e1c60f9856b373db07add85
+SHA512 (ad2vcf-0.1.4.tar.gz) = b167fd249861d10d48806150343768aa9f90d574b5439a2d851d26c6b7bd8e4533832499f91c70e8d90e17cfbdea11ae0b64cf7521a9c249ed5c0b69e3e19701
+Size (ad2vcf-0.1.4.tar.gz) = 15964 bytes