pkgsrc-Changes archive
[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index][Old Index]
CVS commit: pkgsrc/math/py-scipy
Module Name: pkgsrc
Committed By: tnn
Date: Mon Apr 5 19:26:07 UTC 2021
Modified Files:
pkgsrc/math/py-scipy: Makefile PLIST distinfo
Log Message:
py-scipy: update to 1.6.2
Highlights of this release
scipy.ndimage improvements: Fixes and ehancements to boundary extension
modes for interpolation functions. Support for complex-valued inputs in many
filtering and interpolation functions. New grid_mode option for
scipy.ndimage.zoom to enable results consistent with scikit-image's
rescale.
scipy.optimize.linprog has fast, new methods for large, sparse problems
from the HiGHS library.
scipy.stats improvements including new distributions, a new test, and
enhancements to existing distributions and tests
Deprecated features
scipy.spatial changes
Calling KDTree.query with k=None to find all neighbours is deprecated.
Use KDTree.query_ball_point instead.
distance.wminkowski was deprecated; use distance.minkowski and supply
weights with the w keyword instead.
Backwards incompatible changes
Using scipy.fft as a function aliasing numpy.fft.fft was removed after
being deprecated in SciPy 1.4.0. As a result, the scipy.fft submodule
must be explicitly imported now, in line with other SciPy subpackages.
scipy.signal changes
The output of decimate, lfilter_zi, lfiltic, sos2tf, and
sosfilt_zi have been changed to match numpy.result_type of their inputs.
The window function slepian was removed.
The frechet_l and frechet_r distributions were removed.
To generate a diff of this commit:
cvs rdiff -u -r1.43 -r1.44 pkgsrc/math/py-scipy/Makefile
cvs rdiff -u -r1.17 -r1.18 pkgsrc/math/py-scipy/PLIST
cvs rdiff -u -r1.22 -r1.23 pkgsrc/math/py-scipy/distinfo
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
Modified files:
Index: pkgsrc/math/py-scipy/Makefile
diff -u pkgsrc/math/py-scipy/Makefile:1.43 pkgsrc/math/py-scipy/Makefile:1.44
--- pkgsrc/math/py-scipy/Makefile:1.43 Mon Oct 12 21:52:04 2020
+++ pkgsrc/math/py-scipy/Makefile Mon Apr 5 19:26:07 2021
@@ -1,8 +1,7 @@
-# $NetBSD: Makefile,v 1.43 2020/10/12 21:52:04 bacon Exp $
+# $NetBSD: Makefile,v 1.44 2021/04/05 19:26:07 tnn Exp $
-DISTNAME= scipy-1.5.2
+DISTNAME= scipy-1.6.2
PKGNAME= ${PYPKGPREFIX}-${DISTNAME}
-PKGREVISION= 1
CATEGORIES= math python
MASTER_SITES= ${MASTER_SITE_PYPI:=s/scipy/}
@@ -32,7 +31,7 @@ FFLAGS+= -fPIC
LDFLAGS.Darwin+= -headerpad_max_install_names
-PYTHON_VERSIONS_INCOMPATIBLE= 27
+PYTHON_VERSIONS_INCOMPATIBLE= 36 27
REPLACE_PYTHON+= scipy/sparse/linalg/isolve/tests/test_gcrotmk.py
Index: pkgsrc/math/py-scipy/PLIST
diff -u pkgsrc/math/py-scipy/PLIST:1.17 pkgsrc/math/py-scipy/PLIST:1.18
--- pkgsrc/math/py-scipy/PLIST:1.17 Tue Aug 4 01:16:19 2020
+++ pkgsrc/math/py-scipy/PLIST Mon Apr 5 19:26:07 2021
@@ -1,12 +1,12 @@
-@comment $NetBSD: PLIST,v 1.17 2020/08/04 01:16:19 tnn Exp $
+@comment $NetBSD: PLIST,v 1.18 2021/04/05 19:26:07 tnn Exp $
${PYSITELIB}/${EGG_FILE}/PKG-INFO
${PYSITELIB}/${EGG_FILE}/SOURCES.txt
${PYSITELIB}/${EGG_FILE}/dependency_links.txt
+${PYSITELIB}/${EGG_FILE}/requires.txt
${PYSITELIB}/${EGG_FILE}/top_level.txt
${PYSITELIB}/scipy/HACKING.rst.txt
${PYSITELIB}/scipy/INSTALL.rst.txt
${PYSITELIB}/scipy/LICENSE.txt
-${PYSITELIB}/scipy/THANKS.txt
${PYSITELIB}/scipy/__config__.py
${PYSITELIB}/scipy/__config__.pyc
${PYSITELIB}/scipy/__config__.pyo
@@ -29,7 +29,6 @@ ${PYSITELIB}/scipy/_build_utils/system_i
${PYSITELIB}/scipy/_build_utils/system_info.pyc
${PYSITELIB}/scipy/_build_utils/system_info.pyo
${PYSITELIB}/scipy/_build_utils/tests/__init__.py
-${PYSITELIB}/scipy/_build_utils/tests/test_circular_imports.py
${PYSITELIB}/scipy/_build_utils/tests/test_scipy_version.py
${PYSITELIB}/scipy/_distributor_init.py
${PYSITELIB}/scipy/_distributor_init.pyc
@@ -37,10 +36,16 @@ ${PYSITELIB}/scipy/_distributor_init.pyo
${PYSITELIB}/scipy/_lib/__init__.py
${PYSITELIB}/scipy/_lib/__init__.pyc
${PYSITELIB}/scipy/_lib/__init__.pyo
+${PYSITELIB}/scipy/_lib/_bunch.py
+${PYSITELIB}/scipy/_lib/_bunch.pyc
+${PYSITELIB}/scipy/_lib/_bunch.pyo
${PYSITELIB}/scipy/_lib/_ccallback.py
${PYSITELIB}/scipy/_lib/_ccallback.pyc
${PYSITELIB}/scipy/_lib/_ccallback.pyo
${PYSITELIB}/scipy/_lib/_ccallback_c.so
+${PYSITELIB}/scipy/_lib/_disjoint_set.py
+${PYSITELIB}/scipy/_lib/_disjoint_set.pyc
+${PYSITELIB}/scipy/_lib/_disjoint_set.pyo
${PYSITELIB}/scipy/_lib/_fpumode.so
${PYSITELIB}/scipy/_lib/_gcutils.py
${PYSITELIB}/scipy/_lib/_gcutils.pyc
@@ -93,9 +98,11 @@ ${PYSITELIB}/scipy/_lib/tests/test__pep4
${PYSITELIB}/scipy/_lib/tests/test__testutils.py
${PYSITELIB}/scipy/_lib/tests/test__threadsafety.py
${PYSITELIB}/scipy/_lib/tests/test__util.py
+${PYSITELIB}/scipy/_lib/tests/test_bunch.py
${PYSITELIB}/scipy/_lib/tests/test_ccallback.py
${PYSITELIB}/scipy/_lib/tests/test_deprecation.py
${PYSITELIB}/scipy/_lib/tests/test_import_cycles.py
+${PYSITELIB}/scipy/_lib/tests/test_linear_assignment.py
${PYSITELIB}/scipy/_lib/tests/test_tmpdirs.py
${PYSITELIB}/scipy/_lib/tests/test_warnings.py
${PYSITELIB}/scipy/_lib/uarray.py
@@ -115,6 +122,7 @@ ${PYSITELIB}/scipy/cluster/setup.pyc
${PYSITELIB}/scipy/cluster/setup.pyo
${PYSITELIB}/scipy/cluster/tests/__init__.py
${PYSITELIB}/scipy/cluster/tests/hierarchy_test_data.py
+${PYSITELIB}/scipy/cluster/tests/test_disjoint_set.py
${PYSITELIB}/scipy/cluster/tests/test_hierarchy.py
${PYSITELIB}/scipy/cluster/tests/test_vq.py
${PYSITELIB}/scipy/cluster/vq.py
@@ -254,6 +262,11 @@ ${PYSITELIB}/scipy/integrate/_ivp/radau.
${PYSITELIB}/scipy/integrate/_ivp/rk.py
${PYSITELIB}/scipy/integrate/_ivp/rk.pyc
${PYSITELIB}/scipy/integrate/_ivp/rk.pyo
+${PYSITELIB}/scipy/integrate/_ivp/setup.py
+${PYSITELIB}/scipy/integrate/_ivp/setup.pyc
+${PYSITELIB}/scipy/integrate/_ivp/setup.pyo
+${PYSITELIB}/scipy/integrate/_ivp/tests/test_ivp.py
+${PYSITELIB}/scipy/integrate/_ivp/tests/test_rk.py
${PYSITELIB}/scipy/integrate/_ode.py
${PYSITELIB}/scipy/integrate/_ode.pyc
${PYSITELIB}/scipy/integrate/_ode.pyo
@@ -370,6 +383,7 @@ ${PYSITELIB}/scipy/io/arff/tests/data/qu
${PYSITELIB}/scipy/io/arff/tests/data/quoted_nominal_spaces.arff
${PYSITELIB}/scipy/io/arff/tests/data/test1.arff
${PYSITELIB}/scipy/io/arff/tests/data/test10.arff
+${PYSITELIB}/scipy/io/arff/tests/data/test11.arff
${PYSITELIB}/scipy/io/arff/tests/data/test2.arff
${PYSITELIB}/scipy/io/arff/tests/data/test3.arff
${PYSITELIB}/scipy/io/arff/tests/data/test4.arff
@@ -623,13 +637,23 @@ ${PYSITELIB}/scipy/io/tests/data/struct_
${PYSITELIB}/scipy/io/tests/data/struct_scalars_replicated_3d.sav
${PYSITELIB}/scipy/io/tests/data/test-44100Hz-2ch-32bit-float-be.wav
${PYSITELIB}/scipy/io/tests/data/test-44100Hz-2ch-32bit-float-le.wav
+${PYSITELIB}/scipy/io/tests/data/test-44100Hz-be-1ch-4bytes.wav
${PYSITELIB}/scipy/io/tests/data/test-44100Hz-le-1ch-4bytes-early-eof-no-data.wav
${PYSITELIB}/scipy/io/tests/data/test-44100Hz-le-1ch-4bytes-early-eof.wav
${PYSITELIB}/scipy/io/tests/data/test-44100Hz-le-1ch-4bytes-incomplete-chunk.wav
${PYSITELIB}/scipy/io/tests/data/test-44100Hz-le-1ch-4bytes.wav
${PYSITELIB}/scipy/io/tests/data/test-48000Hz-2ch-64bit-float-le-wavex.wav
+${PYSITELIB}/scipy/io/tests/data/test-8000Hz-be-3ch-5S-24bit.wav
+${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-1ch-10S-20bit-extra.wav
${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-1ch-1byte-ulaw.wav
${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-2ch-1byteu.wav
+${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-3ch-5S-24bit.wav
+${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-3ch-5S-36bit.wav
+${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-3ch-5S-45bit.wav
+${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-3ch-5S-53bit.wav
+${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-3ch-5S-64bit.wav
+${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-4ch-9S-12bit.wav
+${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-5ch-9S-5bit.wav
${PYSITELIB}/scipy/io/tests/data/various_compressed.sav
${PYSITELIB}/scipy/io/tests/test_fortran.py
${PYSITELIB}/scipy/io/tests/test_idl.py
@@ -679,6 +703,7 @@ ${PYSITELIB}/scipy/linalg/_matfuncs_inv_
${PYSITELIB}/scipy/linalg/_matfuncs_sqrtm.py
${PYSITELIB}/scipy/linalg/_matfuncs_sqrtm.pyc
${PYSITELIB}/scipy/linalg/_matfuncs_sqrtm.pyo
+${PYSITELIB}/scipy/linalg/_matfuncs_sqrtm_triu.so
${PYSITELIB}/scipy/linalg/_procrustes.py
${PYSITELIB}/scipy/linalg/_procrustes.pyc
${PYSITELIB}/scipy/linalg/_procrustes.pyo
@@ -765,6 +790,7 @@ ${PYSITELIB}/scipy/linalg/tests/test_fbl
${PYSITELIB}/scipy/linalg/tests/test_interpolative.py
${PYSITELIB}/scipy/linalg/tests/test_lapack.py
${PYSITELIB}/scipy/linalg/tests/test_matfuncs.py
+${PYSITELIB}/scipy/linalg/tests/test_matmul_toeplitz.py
${PYSITELIB}/scipy/linalg/tests/test_procrustes.py
${PYSITELIB}/scipy/linalg/tests/test_sketches.py
${PYSITELIB}/scipy/linalg/tests/test_solve_toeplitz.py
@@ -793,7 +819,6 @@ ${PYSITELIB}/scipy/ndimage/__init__.py
${PYSITELIB}/scipy/ndimage/__init__.pyc
${PYSITELIB}/scipy/ndimage/__init__.pyo
${PYSITELIB}/scipy/ndimage/_ctest.so
-${PYSITELIB}/scipy/ndimage/_ctest_oldapi.so
${PYSITELIB}/scipy/ndimage/_cytest.so
${PYSITELIB}/scipy/ndimage/_nd_image.so
${PYSITELIB}/scipy/ndimage/_ni_docstrings.py
@@ -830,10 +855,10 @@ ${PYSITELIB}/scipy/ndimage/tests/dots.pn
${PYSITELIB}/scipy/ndimage/tests/test_c_api.py
${PYSITELIB}/scipy/ndimage/tests/test_datatypes.py
${PYSITELIB}/scipy/ndimage/tests/test_filters.py
+${PYSITELIB}/scipy/ndimage/tests/test_fourier.py
+${PYSITELIB}/scipy/ndimage/tests/test_interpolation.py
${PYSITELIB}/scipy/ndimage/tests/test_measurements.py
${PYSITELIB}/scipy/ndimage/tests/test_morphology.py
-${PYSITELIB}/scipy/ndimage/tests/test_ndimage.py
-${PYSITELIB}/scipy/ndimage/tests/test_regression.py
${PYSITELIB}/scipy/ndimage/tests/test_splines.py
${PYSITELIB}/scipy/odr/__init__.py
${PYSITELIB}/scipy/odr/__init__.pyc
@@ -879,10 +904,38 @@ ${PYSITELIB}/scipy/optimize/_group_colum
${PYSITELIB}/scipy/optimize/_hessian_update_strategy.py
${PYSITELIB}/scipy/optimize/_hessian_update_strategy.pyc
${PYSITELIB}/scipy/optimize/_hessian_update_strategy.pyo
+${PYSITELIB}/scipy/optimize/_highs/__init__.py
+${PYSITELIB}/scipy/optimize/_highs/__init__.pyc
+${PYSITELIB}/scipy/optimize/_highs/__init__.pyo
+${PYSITELIB}/scipy/optimize/_highs/_highs_constants.so
+${PYSITELIB}/scipy/optimize/_highs/_highs_wrapper.so
+${PYSITELIB}/scipy/optimize/_highs/_mpswriter.so
+${PYSITELIB}/scipy/optimize/_highs/cython/src/HConst.pxd
+${PYSITELIB}/scipy/optimize/_highs/cython/src/Highs.pxd
+${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsIO.pxd
+${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsInfo.pxd
+${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsLp.pxd
+${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsLpUtils.pxd
+${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsMipSolver.pxd
+${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsModelUtils.pxd
+${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsOptions.pxd
+${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsRuntimeOptions.pxd
+${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsStatus.pxd
+${PYSITELIB}/scipy/optimize/_highs/cython/src/SimplexConst.pxd
+${PYSITELIB}/scipy/optimize/_highs/cython/src/highs_c_api.pxd
+${PYSITELIB}/scipy/optimize/_highs/setup.py
+${PYSITELIB}/scipy/optimize/_highs/setup.pyc
+${PYSITELIB}/scipy/optimize/_highs/setup.pyo
${PYSITELIB}/scipy/optimize/_lbfgsb.so
${PYSITELIB}/scipy/optimize/_linprog.py
${PYSITELIB}/scipy/optimize/_linprog.pyc
${PYSITELIB}/scipy/optimize/_linprog.pyo
+${PYSITELIB}/scipy/optimize/_linprog_doc.py
+${PYSITELIB}/scipy/optimize/_linprog_doc.pyc
+${PYSITELIB}/scipy/optimize/_linprog_doc.pyo
+${PYSITELIB}/scipy/optimize/_linprog_highs.py
+${PYSITELIB}/scipy/optimize/_linprog_highs.pyc
+${PYSITELIB}/scipy/optimize/_linprog_highs.pyo
${PYSITELIB}/scipy/optimize/_linprog_ip.py
${PYSITELIB}/scipy/optimize/_linprog_ip.pyc
${PYSITELIB}/scipy/optimize/_linprog_ip.pyo
@@ -937,6 +990,9 @@ ${PYSITELIB}/scipy/optimize/_nnls.pyo
${PYSITELIB}/scipy/optimize/_numdiff.py
${PYSITELIB}/scipy/optimize/_numdiff.pyc
${PYSITELIB}/scipy/optimize/_numdiff.pyo
+${PYSITELIB}/scipy/optimize/_qap.py
+${PYSITELIB}/scipy/optimize/_qap.pyc
+${PYSITELIB}/scipy/optimize/_qap.pyo
${PYSITELIB}/scipy/optimize/_remove_redundancy.py
${PYSITELIB}/scipy/optimize/_remove_redundancy.pyc
${PYSITELIB}/scipy/optimize/_remove_redundancy.pyo
@@ -1084,6 +1140,7 @@ ${PYSITELIB}/scipy/optimize/tests/test_m
${PYSITELIB}/scipy/optimize/tests/test_nnls.py
${PYSITELIB}/scipy/optimize/tests/test_nonlin.py
${PYSITELIB}/scipy/optimize/tests/test_optimize.py
+${PYSITELIB}/scipy/optimize/tests/test_quadratic_assignment.py
${PYSITELIB}/scipy/optimize/tests/test_regression.py
${PYSITELIB}/scipy/optimize/tests/test_slsqp.py
${PYSITELIB}/scipy/optimize/tests/test_tnc.py
@@ -1160,6 +1217,7 @@ ${PYSITELIB}/scipy/signal/tests/test_fir
${PYSITELIB}/scipy/signal/tests/test_ltisys.py
${PYSITELIB}/scipy/signal/tests/test_max_len_seq.py
${PYSITELIB}/scipy/signal/tests/test_peak_finding.py
+${PYSITELIB}/scipy/signal/tests/test_result_type.py
${PYSITELIB}/scipy/signal/tests/test_savitzky_golay.py
${PYSITELIB}/scipy/signal/tests/test_signaltools.py
${PYSITELIB}/scipy/signal/tests/test_spectral.py
@@ -1477,9 +1535,7 @@ ${PYSITELIB}/scipy/spatial/transform/_ro
${PYSITELIB}/scipy/spatial/transform/_rotation_spline.py
${PYSITELIB}/scipy/spatial/transform/_rotation_spline.pyc
${PYSITELIB}/scipy/spatial/transform/_rotation_spline.pyo
-${PYSITELIB}/scipy/spatial/transform/rotation.py
-${PYSITELIB}/scipy/spatial/transform/rotation.pyc
-${PYSITELIB}/scipy/spatial/transform/rotation.pyo
+${PYSITELIB}/scipy/spatial/transform/rotation.so
${PYSITELIB}/scipy/spatial/transform/setup.py
${PYSITELIB}/scipy/spatial/transform/setup.pyc
${PYSITELIB}/scipy/spatial/transform/setup.pyo
@@ -1719,6 +1775,7 @@ ${PYSITELIB}/scipy/stats/tests/test_disc
${PYSITELIB}/scipy/stats/tests/test_discrete_distns.py
${PYSITELIB}/scipy/stats/tests/test_distributions.py
${PYSITELIB}/scipy/stats/tests/test_fit.py
+${PYSITELIB}/scipy/stats/tests/test_hypotests.py
${PYSITELIB}/scipy/stats/tests/test_kdeoth.py
${PYSITELIB}/scipy/stats/tests/test_morestats.py
${PYSITELIB}/scipy/stats/tests/test_mstats_basic.py
Index: pkgsrc/math/py-scipy/distinfo
diff -u pkgsrc/math/py-scipy/distinfo:1.22 pkgsrc/math/py-scipy/distinfo:1.23
--- pkgsrc/math/py-scipy/distinfo:1.22 Tue Aug 4 01:16:19 2020
+++ pkgsrc/math/py-scipy/distinfo Mon Apr 5 19:26:07 2021
@@ -1,7 +1,7 @@
-$NetBSD: distinfo,v 1.22 2020/08/04 01:16:19 tnn Exp $
+$NetBSD: distinfo,v 1.23 2021/04/05 19:26:07 tnn Exp $
-SHA1 (scipy-1.5.2.tar.gz) = d921aa98f73ea5bc533536df7fa681df52d8b9e2
-RMD160 (scipy-1.5.2.tar.gz) = 84d89d666191a1a2270a03bf4b45b40195615e42
-SHA512 (scipy-1.5.2.tar.gz) = 45463df30a0f6270d9f4cf52235f31607904a6ae1375e12600e7f1ab2d27b1dc25a6211b49dceb71506be22c756890adaf9f81d9e6be7455def86c9caf0dc923
-Size (scipy-1.5.2.tar.gz) = 25423944 bytes
+SHA1 (scipy-1.6.2.tar.gz) = 7ef8a684f9feb4fd24d35e87f9d1f69eb6ec793e
+RMD160 (scipy-1.6.2.tar.gz) = 9255e87c9b0f16028e65469b477ade7a76a5ec17
+SHA512 (scipy-1.6.2.tar.gz) = 18b03f32e8343c5a6c6148ac0bfd4b5f2cc9ff5f74d5d41761ae9e773d6af8774c7b09a3fcc47122864eccce1dbbc17e9325819885d3fc3ab2baf98e7d3befa4
+Size (scipy-1.6.2.tar.gz) = 27187804 bytes
SHA1 (patch-scipy_special___round.h) = bc05a935e6423ce8395450ad3b30e88826939422
Home |
Main Index |
Thread Index |
Old Index