CVS commit: pkgsrc/biology/openbabel

["Sebastian Wiedenroth" <wiedi%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   wiedi
Date:           Sat May  2 15:05:30 UTC 2020

Modified Files:
        pkgsrc/biology/openbabel: Makefile distinfo
Added Files:
        pkgsrc/biology/openbabel: PLIST.SunOS
        pkgsrc/biology/openbabel/patches: patch-test_addhtest.cpp

Log Message:
openbabel: fix build on SunOS


To generate a diff of this commit:
cvs rdiff -u -r1.38 -r1.39 pkgsrc/biology/openbabel/Makefile
cvs rdiff -u -r0 -r1.3 pkgsrc/biology/openbabel/PLIST.SunOS
cvs rdiff -u -r1.9 -r1.10 pkgsrc/biology/openbabel/distinfo
cvs rdiff -u -r0 -r1.1 \
    pkgsrc/biology/openbabel/patches/patch-test_addhtest.cpp

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/openbabel/Makefile
diff -u pkgsrc/biology/openbabel/Makefile:1.38 pkgsrc/biology/openbabel/Makefile:1.39
--- pkgsrc/biology/openbabel/Makefile:1.38      Tue Mar 10 22:09:26 2020
+++ pkgsrc/biology/openbabel/Makefile   Sat May  2 15:05:30 2020
@@ -1,9 +1,9 @@
-# $NetBSD: Makefile,v 1.38 2020/03/10 22:09:26 wiz Exp $
+# $NetBSD: Makefile,v 1.39 2020/05/02 15:05:30 wiedi Exp $
 #
 
 GITHUB_PROJECT=        openbabel
 DISTNAME=      openbabel-${RELVERSION:S/-/./g}
-PKGREVISION=   3
+PKGREVISION=   4
 CATEGORIES=    biology
 MASTER_SITES=  ${MASTER_SITE_GITHUB:=openbabel/}
 GITHUB_TAG=    ${PKGBASE}-${RELVERSION}

Index: pkgsrc/biology/openbabel/distinfo
diff -u pkgsrc/biology/openbabel/distinfo:1.9 pkgsrc/biology/openbabel/distinfo:1.10
--- pkgsrc/biology/openbabel/distinfo:1.9       Wed Nov 20 18:07:55 2019
+++ pkgsrc/biology/openbabel/distinfo   Sat May  2 15:05:30 2020
@@ -1,4 +1,4 @@
-$NetBSD: distinfo,v 1.9 2019/11/20 18:07:55 kamil Exp $
+$NetBSD: distinfo,v 1.10 2020/05/02 15:05:30 wiedi Exp $
 
 SHA1 (openbabel-3.0.0.tar.gz) = 8e1428127f00e39f5f05f58b9b186cd8e50f2486
 RMD160 (openbabel-3.0.0.tar.gz) = 333fd2af6dd6e59ca88258c2f228932a728321c6
@@ -8,3 +8,4 @@ SHA1 (patch-doc_CMakeLists.txt) = c4a46f
 SHA1 (patch-openbabel-3.pc.cmake) = abae8cf74db7d45d340f17e5ef9749b6bafa5a70
 SHA1 (patch-src_conformersearch.cpp) = 0f16cc0d0a45e30c6bf00af3b67fac435013a337
 SHA1 (patch-src_formats_confabreport.cpp) = d9f81b6dfeff8ce7e94be5fdb375972ca8d422f2
+SHA1 (patch-test_addhtest.cpp) = 995f7b532517ef9cee8ee924181c3103aa6f3b6c

Added files:

Index: pkgsrc/biology/openbabel/PLIST.SunOS
diff -u /dev/null pkgsrc/biology/openbabel/PLIST.SunOS:1.3
--- /dev/null   Sat May  2 15:05:30 2020
+++ pkgsrc/biology/openbabel/PLIST.SunOS        Sat May  2 15:05:30 2020
@@ -0,0 +1,2 @@
+@comment $NetBSD: PLIST.SunOS,v 1.3 2020/05/02 15:05:30 wiedi Exp $
+lib/openbabel/${PKGVERSION}/xtcformat.so

Index: pkgsrc/biology/openbabel/patches/patch-test_addhtest.cpp
diff -u /dev/null pkgsrc/biology/openbabel/patches/patch-test_addhtest.cpp:1.1
--- /dev/null   Sat May  2 15:05:30 2020
+++ pkgsrc/biology/openbabel/patches/patch-test_addhtest.cpp    Sat May  2 15:05:30 2020
@@ -0,0 +1,17 @@
+$NetBSD: patch-test_addhtest.cpp,v 1.1 2020/05/02 15:05:30 wiedi Exp $
+
+Need alloca.h on SunOS
+
+--- test/addhtest.cpp.orig     2019-10-07 16:39:17.000000000 +0000
++++ test/addhtest.cpp
+@@ -34,6 +34,10 @@ GNU General Public License for more deta
+ #include <iostream>
+ #include <fstream>
+ 
++#if defined(__sun)
++#include <alloca.h>
++#endif
++
+ using namespace std;
+ using namespace OpenBabel;
+