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CVS commit: pkgsrc/math/py-scipy
Module Name: pkgsrc
Committed By: adam
Date: Mon May 14 06:39:32 UTC 2018
Modified Files:
pkgsrc/math/py-scipy: Makefile PLIST distinfo
Removed Files:
pkgsrc/math/py-scipy: PLIST.Darwin
Log Message:
py-scipy: updated to 1.1.0
SciPy 1.1.0 is the culmination of 7 months of hard work. It contains
many new features, numerous bug-fixes, improved test coverage and better
documentation. There have been a number of deprecations and API changes
in this release, which are documented below. All users are encouraged to
upgrade to this release, as there are a large number of bug-fixes and
optimizations. Before upgrading, we recommend that users check that
their own code does not use deprecated SciPy functionality (to do so,
run your code with python -Wd and check for DeprecationWarning
s). Our development attention will now shift to bug-fix releases on the
1.1.x branch, and on adding new features on the master branch.
To generate a diff of this commit:
cvs rdiff -u -r1.32 -r1.33 pkgsrc/math/py-scipy/Makefile
cvs rdiff -u -r1.13 -r1.14 pkgsrc/math/py-scipy/PLIST
cvs rdiff -u -r1.1 -r0 pkgsrc/math/py-scipy/PLIST.Darwin
cvs rdiff -u -r1.15 -r1.16 pkgsrc/math/py-scipy/distinfo
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
Modified files:
Index: pkgsrc/math/py-scipy/Makefile
diff -u pkgsrc/math/py-scipy/Makefile:1.32 pkgsrc/math/py-scipy/Makefile:1.33
--- pkgsrc/math/py-scipy/Makefile:1.32 Sat May 12 21:21:46 2018
+++ pkgsrc/math/py-scipy/Makefile Mon May 14 06:39:32 2018
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.32 2018/05/12 21:21:46 jperkin Exp $
+# $NetBSD: Makefile,v 1.33 2018/05/14 06:39:32 adam Exp $
-DISTNAME= scipy-1.0.1
+DISTNAME= scipy-1.1.0
PKGNAME= ${PYPKGPREFIX}-${DISTNAME}
CATEGORIES= math python
MASTER_SITES= ${MASTER_SITE_PYPI:=s/scipy/}
@@ -13,8 +13,6 @@ LICENSE= modified-bsd
USE_LANGUAGES+= c c++ fortran
MAKE_ENV+= ATLAS=None
-PLIST_VARS+= dsym
-
# XXX Avoid picking up other compilers when installed
.include "../../mk/compiler.mk"
@@ -22,9 +20,6 @@ PLIST_VARS+= dsym
PYSETUPBUILDARGS+= --fcompiler=g95
.elif defined(PKGSRC_FORTRAN) && !empty(PKGSRC_FORTRAN:Mgfortran)
PYSETUPBUILDARGS+= --fcompiler=gnu95
-. if defined(GFORTRAN_VERSION) && ${GFORTRAN_VERSION} == "7"
-PLIST.dsym= yes
-. endif
LDFLAGS.Darwin+= -undefined dynamic_lookup
.else
BROKEN= Requires fortran 95
@@ -93,7 +88,6 @@ REPLACE_PYTHON+= scipy/stats/setup.py
post-install: fix-darwin-install-name
fix-darwin-install-name:
${FIND} ${DESTDIR}${PREFIX} -name "*.so" | \
- ${GREP} -v "dSYM/Contents/Resources/DWARF/" | \
while read lib; do \
libname=`basename $${lib}`; \
libdir=`dirname $${lib} | sed -e 's,${DESTDIR},,'`; \
@@ -110,7 +104,6 @@ BUILD_DEPENDS+= ${PYPKGPREFIX}-nose-[0-9
# https://github.com/scipy/scipy/issues/6499
do-test:
${PYTHONBIN} -c "import scipy; scipy.test('full')"
-# cd ${WRKSRC} && ${PYTHONBIN} runtests.py -v
.include "../../lang/python/application.mk"
.include "../../lang/python/distutils.mk"
Index: pkgsrc/math/py-scipy/PLIST
diff -u pkgsrc/math/py-scipy/PLIST:1.13 pkgsrc/math/py-scipy/PLIST:1.14
--- pkgsrc/math/py-scipy/PLIST:1.13 Thu Nov 2 09:40:29 2017
+++ pkgsrc/math/py-scipy/PLIST Mon May 14 06:39:32 2018
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.13 2017/11/02 09:40:29 adam Exp $
+@comment $NetBSD: PLIST,v 1.14 2018/05/14 06:39:32 adam Exp $
${PYSITELIB}/${EGG_FILE}/PKG-INFO
${PYSITELIB}/${EGG_FILE}/SOURCES.txt
${PYSITELIB}/${EGG_FILE}/dependency_links.txt
@@ -70,6 +70,7 @@ ${PYSITELIB}/scipy/_lib/tests/test__thre
${PYSITELIB}/scipy/_lib/tests/test__util.py
${PYSITELIB}/scipy/_lib/tests/test__version.py
${PYSITELIB}/scipy/_lib/tests/test_ccallback.py
+${PYSITELIB}/scipy/_lib/tests/test_import_cycles.py
${PYSITELIB}/scipy/_lib/tests/test_tmpdirs.py
${PYSITELIB}/scipy/_lib/tests/test_warnings.py
${PYSITELIB}/scipy/cluster/__init__.py
@@ -561,6 +562,9 @@ ${PYSITELIB}/scipy/linalg/__init__.pyo
${PYSITELIB}/scipy/linalg/_cython_signature_generator.py
${PYSITELIB}/scipy/linalg/_cython_signature_generator.pyc
${PYSITELIB}/scipy/linalg/_cython_signature_generator.pyo
+${PYSITELIB}/scipy/linalg/_decomp_ldl.py
+${PYSITELIB}/scipy/linalg/_decomp_ldl.pyc
+${PYSITELIB}/scipy/linalg/_decomp_ldl.pyo
${PYSITELIB}/scipy/linalg/_decomp_polar.py
${PYSITELIB}/scipy/linalg/_decomp_polar.pyc
${PYSITELIB}/scipy/linalg/_decomp_polar.pyo
@@ -668,6 +672,7 @@ ${PYSITELIB}/scipy/linalg/tests/test_cyt
${PYSITELIB}/scipy/linalg/tests/test_cython_lapack.py
${PYSITELIB}/scipy/linalg/tests/test_decomp.py
${PYSITELIB}/scipy/linalg/tests/test_decomp_cholesky.py
+${PYSITELIB}/scipy/linalg/tests/test_decomp_ldl.py
${PYSITELIB}/scipy/linalg/tests/test_decomp_polar.py
${PYSITELIB}/scipy/linalg/tests/test_decomp_update.py
${PYSITELIB}/scipy/linalg/tests/test_fblas.py
@@ -689,6 +694,7 @@ ${PYSITELIB}/scipy/misc/common.pyo
${PYSITELIB}/scipy/misc/doccer.py
${PYSITELIB}/scipy/misc/doccer.pyc
${PYSITELIB}/scipy/misc/doccer.pyo
+${PYSITELIB}/scipy/misc/ecg.dat
${PYSITELIB}/scipy/misc/face.dat
${PYSITELIB}/scipy/misc/pilutil.py
${PYSITELIB}/scipy/misc/pilutil.pyc
@@ -732,6 +738,9 @@ ${PYSITELIB}/scipy/ndimage/_ctest.so
${PYSITELIB}/scipy/ndimage/_ctest_oldapi.so
${PYSITELIB}/scipy/ndimage/_cytest.so
${PYSITELIB}/scipy/ndimage/_nd_image.so
+${PYSITELIB}/scipy/ndimage/_ni_docstrings.py
+${PYSITELIB}/scipy/ndimage/_ni_docstrings.pyc
+${PYSITELIB}/scipy/ndimage/_ni_docstrings.pyo
${PYSITELIB}/scipy/ndimage/_ni_label.so
${PYSITELIB}/scipy/ndimage/_ni_support.py
${PYSITELIB}/scipy/ndimage/_ni_support.pyc
@@ -770,6 +779,7 @@ ${PYSITELIB}/scipy/ndimage/tests/test_io
${PYSITELIB}/scipy/ndimage/tests/test_measurements.py
${PYSITELIB}/scipy/ndimage/tests/test_ndimage.py
${PYSITELIB}/scipy/ndimage/tests/test_regression.py
+${PYSITELIB}/scipy/ndimage/tests/test_splines.py
${PYSITELIB}/scipy/odr/__init__.py
${PYSITELIB}/scipy/odr/__init__.pyc
${PYSITELIB}/scipy/odr/__init__.pyo
@@ -795,10 +805,19 @@ ${PYSITELIB}/scipy/optimize/_basinhoppin
${PYSITELIB}/scipy/optimize/_basinhopping.pyc
${PYSITELIB}/scipy/optimize/_basinhopping.pyo
${PYSITELIB}/scipy/optimize/_cobyla.so
+${PYSITELIB}/scipy/optimize/_constraints.py
+${PYSITELIB}/scipy/optimize/_constraints.pyc
+${PYSITELIB}/scipy/optimize/_constraints.pyo
+${PYSITELIB}/scipy/optimize/_differentiable_functions.py
+${PYSITELIB}/scipy/optimize/_differentiable_functions.pyc
+${PYSITELIB}/scipy/optimize/_differentiable_functions.pyo
${PYSITELIB}/scipy/optimize/_differentialevolution.py
${PYSITELIB}/scipy/optimize/_differentialevolution.pyc
${PYSITELIB}/scipy/optimize/_differentialevolution.pyo
${PYSITELIB}/scipy/optimize/_group_columns.so
+${PYSITELIB}/scipy/optimize/_hessian_update_strategy.py
+${PYSITELIB}/scipy/optimize/_hessian_update_strategy.pyc
+${PYSITELIB}/scipy/optimize/_hessian_update_strategy.pyo
${PYSITELIB}/scipy/optimize/_hungarian.py
${PYSITELIB}/scipy/optimize/_hungarian.pyc
${PYSITELIB}/scipy/optimize/_hungarian.pyo
@@ -865,6 +884,37 @@ ${PYSITELIB}/scipy/optimize/_trlib/setup
${PYSITELIB}/scipy/optimize/_trustregion.py
${PYSITELIB}/scipy/optimize/_trustregion.pyc
${PYSITELIB}/scipy/optimize/_trustregion.pyo
+${PYSITELIB}/scipy/optimize/_trustregion_constr/__init__.py
+${PYSITELIB}/scipy/optimize/_trustregion_constr/__init__.pyc
+${PYSITELIB}/scipy/optimize/_trustregion_constr/__init__.pyo
+${PYSITELIB}/scipy/optimize/_trustregion_constr/canonical_constraint.py
+${PYSITELIB}/scipy/optimize/_trustregion_constr/canonical_constraint.pyc
+${PYSITELIB}/scipy/optimize/_trustregion_constr/canonical_constraint.pyo
+${PYSITELIB}/scipy/optimize/_trustregion_constr/equality_constrained_sqp.py
+${PYSITELIB}/scipy/optimize/_trustregion_constr/equality_constrained_sqp.pyc
+${PYSITELIB}/scipy/optimize/_trustregion_constr/equality_constrained_sqp.pyo
+${PYSITELIB}/scipy/optimize/_trustregion_constr/minimize_trustregion_constr.py
+${PYSITELIB}/scipy/optimize/_trustregion_constr/minimize_trustregion_constr.pyc
+${PYSITELIB}/scipy/optimize/_trustregion_constr/minimize_trustregion_constr.pyo
+${PYSITELIB}/scipy/optimize/_trustregion_constr/projections.py
+${PYSITELIB}/scipy/optimize/_trustregion_constr/projections.pyc
+${PYSITELIB}/scipy/optimize/_trustregion_constr/projections.pyo
+${PYSITELIB}/scipy/optimize/_trustregion_constr/qp_subproblem.py
+${PYSITELIB}/scipy/optimize/_trustregion_constr/qp_subproblem.pyc
+${PYSITELIB}/scipy/optimize/_trustregion_constr/qp_subproblem.pyo
+${PYSITELIB}/scipy/optimize/_trustregion_constr/report.py
+${PYSITELIB}/scipy/optimize/_trustregion_constr/report.pyc
+${PYSITELIB}/scipy/optimize/_trustregion_constr/report.pyo
+${PYSITELIB}/scipy/optimize/_trustregion_constr/setup.py
+${PYSITELIB}/scipy/optimize/_trustregion_constr/setup.pyc
+${PYSITELIB}/scipy/optimize/_trustregion_constr/setup.pyo
+${PYSITELIB}/scipy/optimize/_trustregion_constr/tests/__init__.py
+${PYSITELIB}/scipy/optimize/_trustregion_constr/tests/test_canonical_constraint.py
+${PYSITELIB}/scipy/optimize/_trustregion_constr/tests/test_projections.py
+${PYSITELIB}/scipy/optimize/_trustregion_constr/tests/test_qp_subproblem.py
+${PYSITELIB}/scipy/optimize/_trustregion_constr/tr_interior_point.py
+${PYSITELIB}/scipy/optimize/_trustregion_constr/tr_interior_point.pyc
+${PYSITELIB}/scipy/optimize/_trustregion_constr/tr_interior_point.pyo
${PYSITELIB}/scipy/optimize/_trustregion_dogleg.py
${PYSITELIB}/scipy/optimize/_trustregion_dogleg.pyc
${PYSITELIB}/scipy/optimize/_trustregion_dogleg.pyo
@@ -920,6 +970,9 @@ ${PYSITELIB}/scipy/optimize/tests/test__
${PYSITELIB}/scipy/optimize/tests/test__root.py
${PYSITELIB}/scipy/optimize/tests/test__spectral.py
${PYSITELIB}/scipy/optimize/tests/test_cobyla.py
+${PYSITELIB}/scipy/optimize/tests/test_constraints.py
+${PYSITELIB}/scipy/optimize/tests/test_differentiable_functions.py
+${PYSITELIB}/scipy/optimize/tests/test_hessian_update_strategy.py
${PYSITELIB}/scipy/optimize/tests/test_hungarian.py
${PYSITELIB}/scipy/optimize/tests/test_lbfgsb_hessinv.py
${PYSITELIB}/scipy/optimize/tests/test_least_squares.py
@@ -927,6 +980,7 @@ ${PYSITELIB}/scipy/optimize/tests/test_l
${PYSITELIB}/scipy/optimize/tests/test_linprog.py
${PYSITELIB}/scipy/optimize/tests/test_lsq_common.py
${PYSITELIB}/scipy/optimize/tests/test_lsq_linear.py
+${PYSITELIB}/scipy/optimize/tests/test_minimize_constrained.py
${PYSITELIB}/scipy/optimize/tests/test_minpack.py
${PYSITELIB}/scipy/optimize/tests/test_nnls.py
${PYSITELIB}/scipy/optimize/tests/test_nonlin.py
@@ -960,6 +1014,7 @@ ${PYSITELIB}/scipy/signal/_max_len_seq_i
${PYSITELIB}/scipy/signal/_peak_finding.py
${PYSITELIB}/scipy/signal/_peak_finding.pyc
${PYSITELIB}/scipy/signal/_peak_finding.pyo
+${PYSITELIB}/scipy/signal/_peak_finding_utils.so
${PYSITELIB}/scipy/signal/_savitzky_golay.py
${PYSITELIB}/scipy/signal/_savitzky_golay.pyc
${PYSITELIB}/scipy/signal/_savitzky_golay.pyo
@@ -1017,9 +1072,15 @@ ${PYSITELIB}/scipy/signal/waveforms.pyo
${PYSITELIB}/scipy/signal/wavelets.py
${PYSITELIB}/scipy/signal/wavelets.pyc
${PYSITELIB}/scipy/signal/wavelets.pyo
-${PYSITELIB}/scipy/signal/windows.py
-${PYSITELIB}/scipy/signal/windows.pyc
-${PYSITELIB}/scipy/signal/windows.pyo
+${PYSITELIB}/scipy/signal/windows/__init__.py
+${PYSITELIB}/scipy/signal/windows/__init__.pyc
+${PYSITELIB}/scipy/signal/windows/__init__.pyo
+${PYSITELIB}/scipy/signal/windows/setup.py
+${PYSITELIB}/scipy/signal/windows/setup.pyc
+${PYSITELIB}/scipy/signal/windows/setup.pyo
+${PYSITELIB}/scipy/signal/windows/windows.py
+${PYSITELIB}/scipy/signal/windows/windows.pyc
+${PYSITELIB}/scipy/signal/windows/windows.pyo
${PYSITELIB}/scipy/sparse/__init__.py
${PYSITELIB}/scipy/sparse/__init__.pyc
${PYSITELIB}/scipy/sparse/__init__.pyo
@@ -1185,6 +1246,7 @@ ${PYSITELIB}/scipy/sparse/linalg/isolve/
${PYSITELIB}/scipy/sparse/linalg/isolve/tests/test_lgmres.py
${PYSITELIB}/scipy/sparse/linalg/isolve/tests/test_lsmr.py
${PYSITELIB}/scipy/sparse/linalg/isolve/tests/test_lsqr.py
+${PYSITELIB}/scipy/sparse/linalg/isolve/tests/test_minres.py
${PYSITELIB}/scipy/sparse/linalg/isolve/tests/test_utils.py
${PYSITELIB}/scipy/sparse/linalg/isolve/utils.py
${PYSITELIB}/scipy/sparse/linalg/isolve/utils.pyc
@@ -1319,15 +1381,24 @@ ${PYSITELIB}/scipy/special/_precompute/g
${PYSITELIB}/scipy/special/_precompute/gammainc_data.py
${PYSITELIB}/scipy/special/_precompute/gammainc_data.pyc
${PYSITELIB}/scipy/special/_precompute/gammainc_data.pyo
+${PYSITELIB}/scipy/special/_precompute/lambertw.py
+${PYSITELIB}/scipy/special/_precompute/lambertw.pyc
+${PYSITELIB}/scipy/special/_precompute/lambertw.pyo
${PYSITELIB}/scipy/special/_precompute/loggamma.py
${PYSITELIB}/scipy/special/_precompute/loggamma.pyc
${PYSITELIB}/scipy/special/_precompute/loggamma.pyo
${PYSITELIB}/scipy/special/_precompute/setup.py
${PYSITELIB}/scipy/special/_precompute/setup.pyc
${PYSITELIB}/scipy/special/_precompute/setup.pyo
+${PYSITELIB}/scipy/special/_precompute/struve_convergence.py
+${PYSITELIB}/scipy/special/_precompute/struve_convergence.pyc
+${PYSITELIB}/scipy/special/_precompute/struve_convergence.pyo
${PYSITELIB}/scipy/special/_precompute/utils.py
${PYSITELIB}/scipy/special/_precompute/utils.pyc
${PYSITELIB}/scipy/special/_precompute/utils.pyo
+${PYSITELIB}/scipy/special/_precompute/zetac.py
+${PYSITELIB}/scipy/special/_precompute/zetac.pyc
+${PYSITELIB}/scipy/special/_precompute/zetac.pyo
${PYSITELIB}/scipy/special/_spherical_bessel.py
${PYSITELIB}/scipy/special/_spherical_bessel.pyc
${PYSITELIB}/scipy/special/_spherical_bessel.pyo
@@ -1380,8 +1451,10 @@ ${PYSITELIB}/scipy/special/tests/test_lo
${PYSITELIB}/scipy/special/tests/test_logit.py
${PYSITELIB}/scipy/special/tests/test_logsumexp.py
${PYSITELIB}/scipy/special/tests/test_mpmath.py
+${PYSITELIB}/scipy/special/tests/test_nan_inputs.py
${PYSITELIB}/scipy/special/tests/test_orthogonal.py
${PYSITELIB}/scipy/special/tests/test_orthogonal_eval.py
+${PYSITELIB}/scipy/special/tests/test_owens_t.py
${PYSITELIB}/scipy/special/tests/test_pcf.py
${PYSITELIB}/scipy/special/tests/test_precompute_expn_asy.py
${PYSITELIB}/scipy/special/tests/test_precompute_gammainc.py
@@ -1395,6 +1468,7 @@ ${PYSITELIB}/scipy/special/tests/test_sp
${PYSITELIB}/scipy/special/tests/test_spherical_bessel.py
${PYSITELIB}/scipy/special/tests/test_trig.py
${PYSITELIB}/scipy/special/tests/test_wrightomega.py
+${PYSITELIB}/scipy/special/tests/test_zeta.py
${PYSITELIB}/scipy/stats/__init__.py
${PYSITELIB}/scipy/stats/__init__.pyc
${PYSITELIB}/scipy/stats/__init__.pyo
Index: pkgsrc/math/py-scipy/distinfo
diff -u pkgsrc/math/py-scipy/distinfo:1.15 pkgsrc/math/py-scipy/distinfo:1.16
--- pkgsrc/math/py-scipy/distinfo:1.15 Mon Apr 2 19:52:53 2018
+++ pkgsrc/math/py-scipy/distinfo Mon May 14 06:39:32 2018
@@ -1,7 +1,7 @@
-$NetBSD: distinfo,v 1.15 2018/04/02 19:52:53 adam Exp $
+$NetBSD: distinfo,v 1.16 2018/05/14 06:39:32 adam Exp $
-SHA1 (scipy-1.0.1.tar.gz) = 5b3eecb1678af4ee8d014f60e3af487926fca765
-RMD160 (scipy-1.0.1.tar.gz) = ed94a104299a4cadc19496b7ab1177c87809e1e4
-SHA512 (scipy-1.0.1.tar.gz) = 8620a69aad6300f118a91157ca098dae5e97f0cd7ba1379cde17b720ba99ecef8d5442b72e92682a4e6f02bb9b188334bf70dbb6715e2872737c2eaa71e54cd7
-Size (scipy-1.0.1.tar.gz) = 15521892 bytes
+SHA1 (scipy-1.1.0.tar.gz) = 965e7ac23ac1bc2809a1fa13d429aea352bdd124
+RMD160 (scipy-1.1.0.tar.gz) = 960b360b8499728a6d10a2421594ab5a81739b3a
+SHA512 (scipy-1.1.0.tar.gz) = 72fe32c6c009613cb78202598e5db14f8e630b3218839cfe18d43d40550d94cc5aa100c6f5d41f40e86ae148e9b6a13431bb91b0f9be44b0569ccd7b725fe973
+Size (scipy-1.1.0.tar.gz) = 15583560 bytes
SHA1 (patch-scipy_special___round.h) = 30799ea2c824dc9cc0b399e7450ec10ec7137d2b
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