CVS commit: pkgsrc/math/lapack

To: pkgsrc-changes%NetBSD.org@localhost
Subject: CVS commit: pkgsrc/math/lapack
From: "Thomas Klausner" <wiz%netbsd.org@localhost>
Date: Tue, 18 Oct 2016 14:08:14 +0000

Module Name:    pkgsrc
Committed By:   wiz
Date:           Tue Oct 18 14:08:14 UTC 2016

Modified Files:
        pkgsrc/math/lapack: Makefile Makefile.common distinfo
        pkgsrc/math/lapack/patches: patch-aa

Log Message:
Updated lapack to 3.6.1.

 LAPACK 3.6.1: What’s new

[Mark Gates, UTK] blocked back-transformation for the non-symmetric eigenvalue problem

It blocks NB gemv calls into one gemm call inside trevc. To do
that, it needs a new routine, trevc3, because unfortunately the
lwork was not passed into trevc. Attached is the performance speedup
for dgeev. It gives a nice 1.5x speedup for N=20000, and that
appears to still be increasing with N. This is not the improvements
that Greg Henry recently provided for doing the triangular solves
as BLAS-3 instead of BLAS-1. That will take a while to process,
but we expect another, even larger increase in performance when
those changes are applied. This also does not include doing multiple
(BLAS-1) triangular solves in parallel, which is available in MAGMA,
since that requires OpenMP or pthreads.


To generate a diff of this commit:
cvs rdiff -u -r1.37 -r1.38 pkgsrc/math/lapack/Makefile
cvs rdiff -u -r1.2 -r1.3 pkgsrc/math/lapack/Makefile.common
cvs rdiff -u -r1.18 -r1.19 pkgsrc/math/lapack/distinfo
cvs rdiff -u -r1.9 -r1.10 pkgsrc/math/lapack/patches/patch-aa

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/lapack/Makefile
diff -u pkgsrc/math/lapack/Makefile:1.37 pkgsrc/math/lapack/Makefile:1.38
--- pkgsrc/math/lapack/Makefile:1.37    Tue Aug 19 13:37:14 2014
+++ pkgsrc/math/lapack/Makefile Tue Oct 18 14:08:14 2016
@@ -1,8 +1,7 @@
-# $NetBSD: Makefile,v 1.37 2014/08/19 13:37:14 joerg Exp $
+# $NetBSD: Makefile,v 1.38 2016/10/18 14:08:14 wiz Exp $
 
 .include "Makefile.common"
 
-PKGREVISION=   1
 COMMENT=       Linear Algebra PACKage
 
 BUILD_TARGET=  lapacklib

Index: pkgsrc/math/lapack/Makefile.common
diff -u pkgsrc/math/lapack/Makefile.common:1.2 pkgsrc/math/lapack/Makefile.common:1.3
--- pkgsrc/math/lapack/Makefile.common:1.2      Thu Oct  9 14:06:41 2014
+++ pkgsrc/math/lapack/Makefile.common  Tue Oct 18 14:08:14 2016
@@ -1,8 +1,8 @@
-# $NetBSD: Makefile.common,v 1.2 2014/10/09 14:06:41 wiz Exp $
+# $NetBSD: Makefile.common,v 1.3 2016/10/18 14:08:14 wiz Exp $
 # used by math/blas/Makefile
 # used by math/lapack/Makefile
 
-DISTNAME=      lapack-3.5.0
+DISTNAME=      lapack-3.6.1
 CATEGORIES=    math
 MASTER_SITES=  ${MASTER_SITE_NETLIB:=lapack/}
 EXTRACT_SUFX=  .tgz

Index: pkgsrc/math/lapack/distinfo
diff -u pkgsrc/math/lapack/distinfo:1.18 pkgsrc/math/lapack/distinfo:1.19
--- pkgsrc/math/lapack/distinfo:1.18    Tue Nov  3 23:33:35 2015
+++ pkgsrc/math/lapack/distinfo Tue Oct 18 14:08:14 2016
@@ -1,10 +1,10 @@
-$NetBSD: distinfo,v 1.18 2015/11/03 23:33:35 agc Exp $
+$NetBSD: distinfo,v 1.19 2016/10/18 14:08:14 wiz Exp $
 
-SHA1 (lapack-3.5.0.tgz) = 5870081889bf5d15fd977993daab29cf3c5ea970
-RMD160 (lapack-3.5.0.tgz) = d803308ef28f3c6cffb051850823395e2cb29b6a
-SHA512 (lapack-3.5.0.tgz) = b948a0a0db032bda455ec4f519d4e89e4c29e29cecb5b6258ca61f68faaeeac9fdf4ece5c39ffcd0154c5505facbc392c7d09c8348b1d60bdd2685153ab2543f
-Size (lapack-3.5.0.tgz) = 6313139 bytes
+SHA1 (lapack-3.6.1.tgz) = 7220a9bc9c766cb513007f313b804d88f110c228
+RMD160 (lapack-3.6.1.tgz) = 227e893b3716286d405e683ad0e29df475c9ebde
+SHA512 (lapack-3.6.1.tgz) = 2c0af80f6082283395d9c6dc0a463b5a291d7bda3bc3aa68b8f2c7405bfdfac9e4ae417d156da75aa6ed0d90765d0c2ee30bd87ca13ced3c29f8f065038203a1
+Size (lapack-3.6.1.tgz) = 6813749 bytes
 SHA1 (patch-BLAS_SRC_Makefile) = e0ee6f76e94352b05edac151c0a47f82e8773210
-SHA1 (patch-aa) = 54680fd0af562f21e2cfc4917c4f72c91dc504d7
+SHA1 (patch-aa) = 3612216affbe323d1e7e46e66988f94f9f7a3574
 SHA1 (patch-ac) = 14945f2d5d18a6e310a2237ca413967dc5bdf4ff
 SHA1 (patch-ad) = c8768f0efd2473b06251f2234b8b14951a9a877c

Index: pkgsrc/math/lapack/patches/patch-aa
diff -u pkgsrc/math/lapack/patches/patch-aa:1.9 pkgsrc/math/lapack/patches/patch-aa:1.10
--- pkgsrc/math/lapack/patches/patch-aa:1.9     Tue Aug 19 13:37:15 2014
+++ pkgsrc/math/lapack/patches/patch-aa Tue Oct 18 14:08:14 2016
@@ -1,11 +1,8 @@
-$NetBSD: patch-aa,v 1.9 2014/08/19 13:37:15 joerg Exp $
+$NetBSD: patch-aa,v 1.10 2016/10/18 14:08:14 wiz Exp $
 
-Fix portability issues.
-Use LIBTOOL.
-
---- SRC/Makefile.orig  2013-07-09 04:06:39.000000000 +0000
+--- SRC/Makefile.orig  2016-06-18 22:15:11.000000000 +0000
 +++ SRC/Makefile
-@@ -159,7 +159,7 @@ SLASRC = \
+@@ -163,7 +163,7 @@ SLASRC = \
  
  DSLASRC = spotrs.o sgetrs.o spotrf.o sgetrf.o 
  
@@ -14,7 +11,7 @@ Use LIBTOOL.
  SXLASRC = sgesvxx.o sgerfsx.o sla_gerfsx_extended.o sla_geamv.o               \
     sla_gercond.o sla_gerpvgrw.o ssysvxx.o ssyrfsx.o                   \
     sla_syrfsx_extended.o sla_syamv.o sla_syrcond.o sla_syrpvgrw.o     \
-@@ -167,7 +167,7 @@ SXLASRC = sgesvxx.o sgerfsx.o sla_gerfsx
+@@ -171,7 +171,7 @@ SXLASRC = sgesvxx.o sgerfsx.o sla_gerfsx
     sla_porpvgrw.o sgbsvxx.o sgbrfsx.o sla_gbrfsx_extended.o           \
     sla_gbamv.o sla_gbrcond.o sla_gbrpvgrw.o sla_lin_berr.o slarscl2.o \
     slascl2.o sla_wwaddw.o
@@ -22,8 +19,8 @@ Use LIBTOOL.
 +.endif
  
  CLASRC = \
-    cbdsqr.o cgbbrd.o cgbcon.o cgbequ.o cgbrfs.o cgbsv.o  cgbsvx.o \
-@@ -238,7 +238,7 @@ CLASRC = \
+    cpotrf2.o cgetrf2.o \
+@@ -245,7 +245,7 @@ CLASRC = \
     cgeqrt.o cgeqrt2.o cgeqrt3.o cgemqrt.o \
     ctpqrt.o ctpqrt2.o ctpmqrt.o ctprfb.o
  
@@ -32,7 +29,7 @@ Use LIBTOOL.
  CXLASRC = cgesvxx.o cgerfsx.o cla_gerfsx_extended.o cla_geamv.o \
     cla_gercond_c.o cla_gercond_x.o cla_gerpvgrw.o \
     csysvxx.o csyrfsx.o cla_syrfsx_extended.o cla_syamv.o \
-@@ -250,7 +250,7 @@ CXLASRC = cgesvxx.o cgerfsx.o cla_gerfsx
+@@ -257,7 +257,7 @@ CXLASRC = cgesvxx.o cgerfsx.o cla_gerfsx
     chesvxx.o cherfsx.o cla_herfsx_extended.o cla_heamv.o \
     cla_hercond_c.o cla_hercond_x.o cla_herpvgrw.o \
     cla_lin_berr.o clarscl2.o clascl2.o cla_wwaddw.o
@@ -41,7 +38,7 @@ Use LIBTOOL.
  
  ZCLASRC = cpotrs.o cgetrs.o cpotrf.o cgetrf.o 
  
-@@ -318,7 +318,7 @@ DLASRC = \
+@@ -328,7 +328,7 @@ DLASRC = \
     dgeqrt.o dgeqrt2.o dgeqrt3.o dgemqrt.o \
     dtpqrt.o dtpqrt2.o dtpmqrt.o dtprfb.o
  
@@ -50,7 +47,7 @@ Use LIBTOOL.
  DXLASRC = dgesvxx.o dgerfsx.o dla_gerfsx_extended.o dla_geamv.o               \
     dla_gercond.o dla_gerpvgrw.o dsysvxx.o dsyrfsx.o                   \
     dla_syrfsx_extended.o dla_syamv.o dla_syrcond.o dla_syrpvgrw.o     \
-@@ -326,7 +326,7 @@ DXLASRC = dgesvxx.o dgerfsx.o dla_gerfsx
+@@ -336,7 +336,7 @@ DXLASRC = dgesvxx.o dgerfsx.o dla_gerfsx
     dla_porpvgrw.o dgbsvxx.o dgbrfsx.o dla_gbrfsx_extended.o           \
     dla_gbamv.o dla_gbrcond.o dla_gbrpvgrw.o dla_lin_berr.o dlarscl2.o \
     dlascl2.o dla_wwaddw.o
@@ -58,8 +55,8 @@ Use LIBTOOL.
 +.endif
  
  ZLASRC = \
-    zbdsqr.o zgbbrd.o zgbcon.o zgbequ.o zgbrfs.o zgbsv.o  zgbsvx.o \
-@@ -402,7 +402,7 @@ ZLASRC = \
+    zpotrf2.o zgetrf2.o \
+@@ -416,7 +416,7 @@ ZLASRC = \
     zgeqrt.o zgeqrt2.o zgeqrt3.o zgemqrt.o \
     ztpqrt.o ztpqrt2.o ztpmqrt.o ztprfb.o
  
@@ -68,13 +65,16 @@ Use LIBTOOL.
  ZXLASRC = zgesvxx.o zgerfsx.o zla_gerfsx_extended.o zla_geamv.o               \
     zla_gercond_c.o zla_gercond_x.o zla_gerpvgrw.o zsysvxx.o zsyrfsx.o \
     zla_syrfsx_extended.o zla_syamv.o zla_syrcond_c.o zla_syrcond_x.o  \
-@@ -412,20 +412,20 @@ ZXLASRC = zgesvxx.o zgerfsx.o zla_gerfsx
+@@ -426,7 +426,7 @@ ZXLASRC = zgesvxx.o zgerfsx.o zla_gerfsx
     zla_gbrpvgrw.o zhesvxx.o zherfsx.o zla_herfsx_extended.o           \
     zla_heamv.o zla_hercond_c.o zla_hercond_x.o zla_herpvgrw.o         \
     zla_lin_berr.o zlarscl2.o zlascl2.o zla_wwaddw.o
 -endif
 +.endif
  
+ DEPRECSRC = DEPRECATED/cgegs.o DEPRECATED/cgegv.o DEPRECATED/cgelsx.o \
+     DEPRECATED/cgeqpf.o DEPRECATED/cggsvd.o DEPRECATED/cggsvp.o                               \
+@@ -444,19 +444,19 @@ DEPRECSRC = DEPRECATED/cgegs.o DEPRECATE
  ALLOBJ = $(SLASRC) $(DLASRC) $(DSLASRC) $(CLASRC) $(ZLASRC) $(ZCLASRC) \
     $(SCLAUX) $(DZLAUX) $(ALLAUX)
  
@@ -84,17 +84,23 @@ Use LIBTOOL.
 -endif
 +.endif
  
+-ifdef BUILD_DEPRECATED
++.ifdef BUILD_DEPRECATED
+ DEPRECATED = $(DEPRECSRC)
+-endif
++.endif
+ 
  all: ../$(LAPACKLIB)
  
- ../$(LAPACKLIB): $(ALLOBJ) $(ALLXOBJ)
--      $(ARCH) $(ARCHFLAGS) $@ $(ALLOBJ) $(ALLXOBJ)
+ ../$(LAPACKLIB): $(ALLOBJ) $(ALLXOBJ) $(DEPRECATED)
+-      $(ARCH) $(ARCHFLAGS) $@ $(ALLOBJ) $(ALLXOBJ) $(DEPRECATED)
 -      $(RANLIB) $@
 +      ${LIBTOOL} --mode=link --tag=FC ${FC} ${LDFLAGS} -o ../$(LAPACKLIB) \
 +      $(ALLOBJ:.o=.lo) -rpath ${PREFIX}/lib -version-info 4:0
  
  single: $(SLASRC) $(DSLASRC) $(SXLASRC) $(SCLAUX) $(ALLAUX)
        $(ARCH) $(ARCHFLAGS) ../$(LAPACKLIB) $(SLASRC) $(DSLASRC) \
-@@ -456,12 +456,12 @@ $(DLASRC): $(FRC)
+@@ -487,12 +487,12 @@ $(DLASRC): $(FRC)
  $(ZLASRC): $(FRC)
  $(ZCLASRC): $(FRC)
  $(DSLASRC): $(FRC)
@@ -109,25 +115,23 @@ Use LIBTOOL.
  
  FRC:
        @FRC=$(FRC)
-@@ -470,12 +470,14 @@ clean:
-       rm -f *.o
+@@ -501,12 +501,11 @@ clean:
+       rm -f *.o DEPRECATED/*.o
  
  .f.o: 
 -      $(FORTRAN) $(OPTS) -c $< -o $@
-+      ${LIBTOOL} --mode=compile --tag=FC ${FC} ${FFLAGS} -c $<
-+
-+
-+slaruv.o: slaruv.f ; ${LIBTOOL} --mode=compile --tag=FC $(FC) $(NOOPT) -c $< -o $@
-+dlaruv.o: dlaruv.f ; ${LIBTOOL} --mode=compile --tag=FC $(FC) $(NOOPT) -c $< -o $@
-+sla_wwaddw.o: sla_wwaddw.f ; ${LIBTOOL} --mode=compile --tag=FC $(FC) $(NOOPT) -c $< -o $@
-+dla_wwaddw.o: dla_wwaddw.f ; ${LIBTOOL} --mode=compile --tag=FC $(FC) $(NOOPT) -c $< -o $@
-+cla_wwaddw.o: cla_wwaddw.f ; ${LIBTOOL} --mode=compile --tag=FC $(FC) $(NOOPT) -c $< -o $@
-+zla_wwaddw.o: zla_wwaddw.f ; ${LIBTOOL} --mode=compile --tag=FC $(FC) $(NOOPT) -c $< -o $@
- 
+-
 -slaruv.o: slaruv.f ; $(FORTRAN) $(NOOPT) -c $< -o $@
 -dlaruv.o: dlaruv.f ; $(FORTRAN) $(NOOPT) -c $< -o $@
 -sla_wwaddw.o: sla_wwaddw.f ; $(FORTRAN) $(NOOPT) -c $< -o $@
 -dla_wwaddw.o: dla_wwaddw.f ; $(FORTRAN) $(NOOPT) -c $< -o $@
 -cla_wwaddw.o: cla_wwaddw.f ; $(FORTRAN) $(NOOPT) -c $< -o $@
 -zla_wwaddw.o: zla_wwaddw.f ; $(FORTRAN) $(NOOPT) -c $< -o $@
++      ${LIBTOOL} --mode=compile --tag=FC ${FC} ${FFLAGS} -c $<
  
++slaruv.o: slaruv.f ; ${LIBTOOL} --mode=compile --tag=FC $(FC) $(NOOPT) -c $< -o $@
++dlaruv.o: dlaruv.f ; ${LIBTOOL} --mode=compile --tag=FC $(FC) $(NOOPT) -c $< -o $@
++sla_wwaddw.o: sla_wwaddw.f ; ${LIBTOOL} --mode=compile --tag=FC $(FC) $(NOOPT) -c $< -o $@
++dla_wwaddw.o: dla_wwaddw.f ; ${LIBTOOL} --mode=compile --tag=FC $(FC) $(NOOPT) -c $< -o $@
++cla_wwaddw.o: cla_wwaddw.f ; ${LIBTOOL} --mode=compile --tag=FC $(FC) $(NOOPT) -c $< -o $@
++zla_wwaddw.o: zla_wwaddw.f ; ${LIBTOOL} --mode=compile --tag=FC $(FC) $(NOOPT) -c $< -o $@

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