[pkgsrc/trunk]: pkgsrc/biology/ad2vcf biology/ad2vcf: import ad2vcf-0.1.2

[bacon <bacon%pkgsrc.org@localhost>]

details:   https://anonhg.NetBSD.org/pkgsrc/rev/ea787b6cc572
branches:  trunk
changeset: 449274:ea787b6cc572
user:      bacon <bacon%pkgsrc.org@localhost>
date:      Wed Mar 24 18:19:21 2021 +0000

description:
biology/ad2vcf: import ad2vcf-0.1.2

ad2vdf extracts allelic depth info from a SAM stream and adds it to a
corresponding single-sample VCF file.

diffstat:

 biology/ad2vcf/DESCR    |   2 ++
 biology/ad2vcf/Makefile |  19 +++++++++++++++++++
 biology/ad2vcf/PLIST    |   3 +++
 biology/ad2vcf/distinfo |   6 ++++++
 4 files changed, 30 insertions(+), 0 deletions(-)

diffs (46 lines):

diff -r d6b6d919036f -r ea787b6cc572 biology/ad2vcf/DESCR
--- /dev/null   Thu Jan 01 00:00:00 1970 +0000
+++ b/biology/ad2vcf/DESCR      Wed Mar 24 18:19:21 2021 +0000
@@ -0,0 +1,2 @@
+ad2vdf extracts allelic depth info from a SAM stream and adds it to a
+corresponding single-sample VCF file.
diff -r d6b6d919036f -r ea787b6cc572 biology/ad2vcf/Makefile
--- /dev/null   Thu Jan 01 00:00:00 1970 +0000
+++ b/biology/ad2vcf/Makefile   Wed Mar 24 18:19:21 2021 +0000
@@ -0,0 +1,19 @@
+# $NetBSD: Makefile,v 1.1 2021/03/24 18:19:21 bacon Exp $
+
+DISTNAME=      ad2vcf-0.1.2
+CATEGORIES=    biology
+MASTER_SITES=  ${MASTER_SITE_GITHUB:=auerlab/}
+
+MAINTAINER=    bacon%NetBSD.org@localhost
+HOMEPAGE=      https://github.com/auerlab/ad2vcf
+COMMENT=       Add allelic depth info from a SAM stream to a VCF file
+LICENSE=       2-clause-bsd
+
+pre-build:
+       cd ${WRKSRC} && ${MAKE} PREFIX=${PREFIX} depend
+
+do-test:
+       cd ${WRKSRC}/Test && ./run-test.sh
+
+.include "../../biology/biolibc/buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"
diff -r d6b6d919036f -r ea787b6cc572 biology/ad2vcf/PLIST
--- /dev/null   Thu Jan 01 00:00:00 1970 +0000
+++ b/biology/ad2vcf/PLIST      Wed Mar 24 18:19:21 2021 +0000
@@ -0,0 +1,3 @@
+@comment $NetBSD: PLIST,v 1.1 2021/03/24 18:19:21 bacon Exp $
+bin/ad2vcf
+man/man1/ad2vcf.1
diff -r d6b6d919036f -r ea787b6cc572 biology/ad2vcf/distinfo
--- /dev/null   Thu Jan 01 00:00:00 1970 +0000
+++ b/biology/ad2vcf/distinfo   Wed Mar 24 18:19:21 2021 +0000
@@ -0,0 +1,6 @@
+$NetBSD: distinfo,v 1.1 2021/03/24 18:19:21 bacon Exp $
+
+SHA1 (ad2vcf-0.1.2.tar.gz) = 15e8e90122003d2bc83542414ba65e4fa40182ae
+RMD160 (ad2vcf-0.1.2.tar.gz) = 7e98382c79935f46ae259bd879b499966a470cb7
+SHA512 (ad2vcf-0.1.2.tar.gz) = 64db184331207b00659909af219deb9dc352fad64f066e29fc7fabc28f3a60a9209319e589999cdb66551f267d1405d5be6f221c0147da33b4d924e87bec4ad3
+Size (ad2vcf-0.1.2.tar.gz) = 15204 bytes