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[pkgsrc/trunk]: pkgsrc/math/py-scikit-learn math/py-scikit-learn: Update to 0...
details: https://anonhg.NetBSD.org/pkgsrc/rev/bfd4abeea382
branches: trunk
changeset: 411378:bfd4abeea382
user: minskim <minskim%pkgsrc.org@localhost>
date: Tue Feb 11 16:06:45 2020 +0000
description:
math/py-scikit-learn: Update to 0.22.1
Highlights:
- New plotting API
- Stacking Classifier and Regressor
- Permutation-based feature importance
- Native support for missing values for gradient boosting
- Precomputed sparse nearest neighbors graph
- KNN Based Imputation
- Tree pruning
- Retrieve dataframes from OpenML
- Checking scikit-learn compatibility of an estimator
- ROC AUC now supports multiclass classification
diffstat:
math/py-scikit-learn/Makefile | 4 +-
math/py-scikit-learn/PLIST | 589 +++++++++-
math/py-scikit-learn/distinfo | 11 +-
math/py-scikit-learn/patches/patch-sklearn_ensemble____hist__gradient__boosting_splitting.c | 24 -
4 files changed, 538 insertions(+), 90 deletions(-)
diffs (truncated from 1098 to 300 lines):
diff -r 448938649065 -r bfd4abeea382 math/py-scikit-learn/Makefile
--- a/math/py-scikit-learn/Makefile Tue Feb 11 15:53:40 2020 +0000
+++ b/math/py-scikit-learn/Makefile Tue Feb 11 16:06:45 2020 +0000
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.9 2020/01/26 17:31:40 rillig Exp $
+# $NetBSD: Makefile,v 1.10 2020/02/11 16:06:45 minskim Exp $
-DISTNAME= scikit-learn-0.21.2
+DISTNAME= scikit-learn-0.22.1
PKGNAME= ${PYPKGPREFIX}-${DISTNAME}
CATEGORIES= math python
MASTER_SITES= ${MASTER_SITE_PYPI:=s/scikit-learn/}
diff -r 448938649065 -r bfd4abeea382 math/py-scikit-learn/PLIST
--- a/math/py-scikit-learn/PLIST Tue Feb 11 15:53:40 2020 +0000
+++ b/math/py-scikit-learn/PLIST Tue Feb 11 16:06:45 2020 +0000
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.4 2019/06/17 15:01:45 adam Exp $
+@comment $NetBSD: PLIST,v 1.5 2020/02/11 16:06:45 minskim Exp $
${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
@@ -18,12 +18,21 @@
${PYSITELIB}/sklearn/_build_utils/__init__.py
${PYSITELIB}/sklearn/_build_utils/__init__.pyc
${PYSITELIB}/sklearn/_build_utils/__init__.pyo
+${PYSITELIB}/sklearn/_build_utils/deprecated_modules.py
+${PYSITELIB}/sklearn/_build_utils/deprecated_modules.pyc
+${PYSITELIB}/sklearn/_build_utils/deprecated_modules.pyo
${PYSITELIB}/sklearn/_build_utils/openmp_helpers.py
${PYSITELIB}/sklearn/_build_utils/openmp_helpers.pyc
${PYSITELIB}/sklearn/_build_utils/openmp_helpers.pyo
+${PYSITELIB}/sklearn/_build_utils/pre_build_helpers.py
+${PYSITELIB}/sklearn/_build_utils/pre_build_helpers.pyc
+${PYSITELIB}/sklearn/_build_utils/pre_build_helpers.pyo
${PYSITELIB}/sklearn/_config.py
${PYSITELIB}/sklearn/_config.pyc
${PYSITELIB}/sklearn/_config.pyo
+${PYSITELIB}/sklearn/_distributor_init.py
+${PYSITELIB}/sklearn/_distributor_init.pyc
+${PYSITELIB}/sklearn/_distributor_init.pyo
${PYSITELIB}/sklearn/_isotonic.so
${PYSITELIB}/sklearn/base.py
${PYSITELIB}/sklearn/base.pyc
@@ -34,13 +43,40 @@
${PYSITELIB}/sklearn/cluster/__init__.py
${PYSITELIB}/sklearn/cluster/__init__.pyc
${PYSITELIB}/sklearn/cluster/__init__.pyo
+${PYSITELIB}/sklearn/cluster/_affinity_propagation.py
+${PYSITELIB}/sklearn/cluster/_affinity_propagation.pyc
+${PYSITELIB}/sklearn/cluster/_affinity_propagation.pyo
+${PYSITELIB}/sklearn/cluster/_agglomerative.py
+${PYSITELIB}/sklearn/cluster/_agglomerative.pyc
+${PYSITELIB}/sklearn/cluster/_agglomerative.pyo
+${PYSITELIB}/sklearn/cluster/_bicluster.py
+${PYSITELIB}/sklearn/cluster/_bicluster.pyc
+${PYSITELIB}/sklearn/cluster/_bicluster.pyo
+${PYSITELIB}/sklearn/cluster/_birch.py
+${PYSITELIB}/sklearn/cluster/_birch.pyc
+${PYSITELIB}/sklearn/cluster/_birch.pyo
+${PYSITELIB}/sklearn/cluster/_dbscan.py
+${PYSITELIB}/sklearn/cluster/_dbscan.pyc
+${PYSITELIB}/sklearn/cluster/_dbscan.pyo
${PYSITELIB}/sklearn/cluster/_dbscan_inner.so
${PYSITELIB}/sklearn/cluster/_feature_agglomeration.py
${PYSITELIB}/sklearn/cluster/_feature_agglomeration.pyc
${PYSITELIB}/sklearn/cluster/_feature_agglomeration.pyo
-${PYSITELIB}/sklearn/cluster/_hierarchical.so
-${PYSITELIB}/sklearn/cluster/_k_means.so
+${PYSITELIB}/sklearn/cluster/_hierarchical_fast.so
${PYSITELIB}/sklearn/cluster/_k_means_elkan.so
+${PYSITELIB}/sklearn/cluster/_k_means_fast.so
+${PYSITELIB}/sklearn/cluster/_kmeans.py
+${PYSITELIB}/sklearn/cluster/_kmeans.pyc
+${PYSITELIB}/sklearn/cluster/_kmeans.pyo
+${PYSITELIB}/sklearn/cluster/_mean_shift.py
+${PYSITELIB}/sklearn/cluster/_mean_shift.pyc
+${PYSITELIB}/sklearn/cluster/_mean_shift.pyo
+${PYSITELIB}/sklearn/cluster/_optics.py
+${PYSITELIB}/sklearn/cluster/_optics.pyc
+${PYSITELIB}/sklearn/cluster/_optics.pyo
+${PYSITELIB}/sklearn/cluster/_spectral.py
+${PYSITELIB}/sklearn/cluster/_spectral.pyc
+${PYSITELIB}/sklearn/cluster/_spectral.pyo
${PYSITELIB}/sklearn/cluster/affinity_propagation_.py
${PYSITELIB}/sklearn/cluster/affinity_propagation_.pyc
${PYSITELIB}/sklearn/cluster/affinity_propagation_.pyo
@@ -131,6 +167,21 @@
${PYSITELIB}/sklearn/covariance/__init__.py
${PYSITELIB}/sklearn/covariance/__init__.pyc
${PYSITELIB}/sklearn/covariance/__init__.pyo
+${PYSITELIB}/sklearn/covariance/_elliptic_envelope.py
+${PYSITELIB}/sklearn/covariance/_elliptic_envelope.pyc
+${PYSITELIB}/sklearn/covariance/_elliptic_envelope.pyo
+${PYSITELIB}/sklearn/covariance/_empirical_covariance.py
+${PYSITELIB}/sklearn/covariance/_empirical_covariance.pyc
+${PYSITELIB}/sklearn/covariance/_empirical_covariance.pyo
+${PYSITELIB}/sklearn/covariance/_graph_lasso.py
+${PYSITELIB}/sklearn/covariance/_graph_lasso.pyc
+${PYSITELIB}/sklearn/covariance/_graph_lasso.pyo
+${PYSITELIB}/sklearn/covariance/_robust_covariance.py
+${PYSITELIB}/sklearn/covariance/_robust_covariance.pyc
+${PYSITELIB}/sklearn/covariance/_robust_covariance.pyo
+${PYSITELIB}/sklearn/covariance/_shrunk_covariance.py
+${PYSITELIB}/sklearn/covariance/_shrunk_covariance.pyc
+${PYSITELIB}/sklearn/covariance/_shrunk_covariance.pyo
${PYSITELIB}/sklearn/covariance/elliptic_envelope.py
${PYSITELIB}/sklearn/covariance/elliptic_envelope.pyc
${PYSITELIB}/sklearn/covariance/elliptic_envelope.pyo
@@ -155,9 +206,6 @@
${PYSITELIB}/sklearn/covariance/tests/test_elliptic_envelope.py
${PYSITELIB}/sklearn/covariance/tests/test_elliptic_envelope.pyc
${PYSITELIB}/sklearn/covariance/tests/test_elliptic_envelope.pyo
-${PYSITELIB}/sklearn/covariance/tests/test_graph_lasso.py
-${PYSITELIB}/sklearn/covariance/tests/test_graph_lasso.pyc
-${PYSITELIB}/sklearn/covariance/tests/test_graph_lasso.pyo
${PYSITELIB}/sklearn/covariance/tests/test_graphical_lasso.py
${PYSITELIB}/sklearn/covariance/tests/test_graphical_lasso.pyc
${PYSITELIB}/sklearn/covariance/tests/test_graphical_lasso.pyo
@@ -167,6 +215,12 @@
${PYSITELIB}/sklearn/cross_decomposition/__init__.py
${PYSITELIB}/sklearn/cross_decomposition/__init__.pyc
${PYSITELIB}/sklearn/cross_decomposition/__init__.pyo
+${PYSITELIB}/sklearn/cross_decomposition/_cca.py
+${PYSITELIB}/sklearn/cross_decomposition/_cca.pyc
+${PYSITELIB}/sklearn/cross_decomposition/_cca.pyo
+${PYSITELIB}/sklearn/cross_decomposition/_pls.py
+${PYSITELIB}/sklearn/cross_decomposition/_pls.pyc
+${PYSITELIB}/sklearn/cross_decomposition/_pls.pyo
${PYSITELIB}/sklearn/cross_decomposition/cca_.py
${PYSITELIB}/sklearn/cross_decomposition/cca_.pyc
${PYSITELIB}/sklearn/cross_decomposition/cca_.pyo
@@ -182,7 +236,43 @@
${PYSITELIB}/sklearn/datasets/__init__.py
${PYSITELIB}/sklearn/datasets/__init__.pyc
${PYSITELIB}/sklearn/datasets/__init__.pyo
-${PYSITELIB}/sklearn/datasets/_svmlight_format.so
+${PYSITELIB}/sklearn/datasets/_base.py
+${PYSITELIB}/sklearn/datasets/_base.pyc
+${PYSITELIB}/sklearn/datasets/_base.pyo
+${PYSITELIB}/sklearn/datasets/_california_housing.py
+${PYSITELIB}/sklearn/datasets/_california_housing.pyc
+${PYSITELIB}/sklearn/datasets/_california_housing.pyo
+${PYSITELIB}/sklearn/datasets/_covtype.py
+${PYSITELIB}/sklearn/datasets/_covtype.pyc
+${PYSITELIB}/sklearn/datasets/_covtype.pyo
+${PYSITELIB}/sklearn/datasets/_kddcup99.py
+${PYSITELIB}/sklearn/datasets/_kddcup99.pyc
+${PYSITELIB}/sklearn/datasets/_kddcup99.pyo
+${PYSITELIB}/sklearn/datasets/_lfw.py
+${PYSITELIB}/sklearn/datasets/_lfw.pyc
+${PYSITELIB}/sklearn/datasets/_lfw.pyo
+${PYSITELIB}/sklearn/datasets/_olivetti_faces.py
+${PYSITELIB}/sklearn/datasets/_olivetti_faces.pyc
+${PYSITELIB}/sklearn/datasets/_olivetti_faces.pyo
+${PYSITELIB}/sklearn/datasets/_openml.py
+${PYSITELIB}/sklearn/datasets/_openml.pyc
+${PYSITELIB}/sklearn/datasets/_openml.pyo
+${PYSITELIB}/sklearn/datasets/_rcv1.py
+${PYSITELIB}/sklearn/datasets/_rcv1.pyc
+${PYSITELIB}/sklearn/datasets/_rcv1.pyo
+${PYSITELIB}/sklearn/datasets/_samples_generator.py
+${PYSITELIB}/sklearn/datasets/_samples_generator.pyc
+${PYSITELIB}/sklearn/datasets/_samples_generator.pyo
+${PYSITELIB}/sklearn/datasets/_species_distributions.py
+${PYSITELIB}/sklearn/datasets/_species_distributions.pyc
+${PYSITELIB}/sklearn/datasets/_species_distributions.pyo
+${PYSITELIB}/sklearn/datasets/_svmlight_format_fast.so
+${PYSITELIB}/sklearn/datasets/_svmlight_format_io.py
+${PYSITELIB}/sklearn/datasets/_svmlight_format_io.pyc
+${PYSITELIB}/sklearn/datasets/_svmlight_format_io.pyo
+${PYSITELIB}/sklearn/datasets/_twenty_newsgroups.py
+${PYSITELIB}/sklearn/datasets/_twenty_newsgroups.pyc
+${PYSITELIB}/sklearn/datasets/_twenty_newsgroups.pyo
${PYSITELIB}/sklearn/datasets/base.py
${PYSITELIB}/sklearn/datasets/base.pyc
${PYSITELIB}/sklearn/datasets/base.pyo
@@ -224,9 +314,6 @@
${PYSITELIB}/sklearn/datasets/lfw.py
${PYSITELIB}/sklearn/datasets/lfw.pyc
${PYSITELIB}/sklearn/datasets/lfw.pyo
-${PYSITELIB}/sklearn/datasets/mldata.py
-${PYSITELIB}/sklearn/datasets/mldata.pyc
-${PYSITELIB}/sklearn/datasets/mldata.pyo
${PYSITELIB}/sklearn/datasets/olivetti_faces.py
${PYSITELIB}/sklearn/datasets/olivetti_faces.pyc
${PYSITELIB}/sklearn/datasets/olivetti_faces.pyo
@@ -294,6 +381,8 @@
${PYSITELIB}/sklearn/datasets/tests/data/openml/40675/data-v1-download-4965250.arff.gz
${PYSITELIB}/sklearn/datasets/tests/data/openml/40945/api-v1-json-data-40945.json.gz
${PYSITELIB}/sklearn/datasets/tests/data/openml/40945/api-v1-json-data-features-40945.json.gz
+${PYSITELIB}/sklearn/datasets/tests/data/openml/40945/api-v1-json-data-qualities-40945.json.gz
+${PYSITELIB}/sklearn/datasets/tests/data/openml/40945/data-v1-download-16826755.arff.gz
${PYSITELIB}/sklearn/datasets/tests/data/openml/40966/api-v1-json-data-40966.json.gz
${PYSITELIB}/sklearn/datasets/tests/data/openml/40966/api-v1-json-data-features-40966.json.gz
${PYSITELIB}/sklearn/datasets/tests/data/openml/40966/api-v1-json-data-list-data_name-miceprotein-limit-2-data_version-4.json.gz
@@ -312,6 +401,10 @@
${PYSITELIB}/sklearn/datasets/tests/data/openml/61/api-v1-json-data-list-data_name-iris-limit-2-status-active-.json.gz
${PYSITELIB}/sklearn/datasets/tests/data/openml/61/api-v1-json-data-qualities-61.json.gz
${PYSITELIB}/sklearn/datasets/tests/data/openml/61/data-v1-download-61.arff.gz
+${PYSITELIB}/sklearn/datasets/tests/data/openml/62/api-v1-json-data-62.json.gz
+${PYSITELIB}/sklearn/datasets/tests/data/openml/62/api-v1-json-data-features-62.json.gz
+${PYSITELIB}/sklearn/datasets/tests/data/openml/62/api-v1-json-data-qualities-62.json.gz
+${PYSITELIB}/sklearn/datasets/tests/data/openml/62/data-v1-download-52352.arff.gz
${PYSITELIB}/sklearn/datasets/tests/data/svmlight_classification.txt
${PYSITELIB}/sklearn/datasets/tests/data/svmlight_invalid.txt
${PYSITELIB}/sklearn/datasets/tests/data/svmlight_invalid_order.txt
@@ -337,9 +430,9 @@
${PYSITELIB}/sklearn/datasets/tests/test_lfw.py
${PYSITELIB}/sklearn/datasets/tests/test_lfw.pyc
${PYSITELIB}/sklearn/datasets/tests/test_lfw.pyo
-${PYSITELIB}/sklearn/datasets/tests/test_mldata.py
-${PYSITELIB}/sklearn/datasets/tests/test_mldata.pyc
-${PYSITELIB}/sklearn/datasets/tests/test_mldata.pyo
+${PYSITELIB}/sklearn/datasets/tests/test_olivetti_faces.py
+${PYSITELIB}/sklearn/datasets/tests/test_olivetti_faces.pyc
+${PYSITELIB}/sklearn/datasets/tests/test_olivetti_faces.pyo
${PYSITELIB}/sklearn/datasets/tests/test_openml.py
${PYSITELIB}/sklearn/datasets/tests/test_openml.pyc
${PYSITELIB}/sklearn/datasets/tests/test_openml.pyo
@@ -358,11 +451,47 @@
${PYSITELIB}/sklearn/decomposition/__init__.py
${PYSITELIB}/sklearn/decomposition/__init__.pyc
${PYSITELIB}/sklearn/decomposition/__init__.pyo
-${PYSITELIB}/sklearn/decomposition/_online_lda.so
+${PYSITELIB}/sklearn/decomposition/_base.py
+${PYSITELIB}/sklearn/decomposition/_base.pyc
+${PYSITELIB}/sklearn/decomposition/_base.pyo
+${PYSITELIB}/sklearn/decomposition/_cdnmf_fast.so
+${PYSITELIB}/sklearn/decomposition/_dict_learning.py
+${PYSITELIB}/sklearn/decomposition/_dict_learning.pyc
+${PYSITELIB}/sklearn/decomposition/_dict_learning.pyo
+${PYSITELIB}/sklearn/decomposition/_factor_analysis.py
+${PYSITELIB}/sklearn/decomposition/_factor_analysis.pyc
+${PYSITELIB}/sklearn/decomposition/_factor_analysis.pyo
+${PYSITELIB}/sklearn/decomposition/_fastica.py
+${PYSITELIB}/sklearn/decomposition/_fastica.pyc
+${PYSITELIB}/sklearn/decomposition/_fastica.pyo
+${PYSITELIB}/sklearn/decomposition/_incremental_pca.py
+${PYSITELIB}/sklearn/decomposition/_incremental_pca.pyc
+${PYSITELIB}/sklearn/decomposition/_incremental_pca.pyo
+${PYSITELIB}/sklearn/decomposition/_kernel_pca.py
+${PYSITELIB}/sklearn/decomposition/_kernel_pca.pyc
+${PYSITELIB}/sklearn/decomposition/_kernel_pca.pyo
+${PYSITELIB}/sklearn/decomposition/_lda.py
+${PYSITELIB}/sklearn/decomposition/_lda.pyc
+${PYSITELIB}/sklearn/decomposition/_lda.pyo
+${PYSITELIB}/sklearn/decomposition/_nmf.py
+${PYSITELIB}/sklearn/decomposition/_nmf.pyc
+${PYSITELIB}/sklearn/decomposition/_nmf.pyo
+${PYSITELIB}/sklearn/decomposition/_online_lda_fast.so
+${PYSITELIB}/sklearn/decomposition/_pca.py
+${PYSITELIB}/sklearn/decomposition/_pca.pyc
+${PYSITELIB}/sklearn/decomposition/_pca.pyo
+${PYSITELIB}/sklearn/decomposition/_sparse_pca.py
+${PYSITELIB}/sklearn/decomposition/_sparse_pca.pyc
+${PYSITELIB}/sklearn/decomposition/_sparse_pca.pyo
+${PYSITELIB}/sklearn/decomposition/_truncated_svd.py
+${PYSITELIB}/sklearn/decomposition/_truncated_svd.pyc
+${PYSITELIB}/sklearn/decomposition/_truncated_svd.pyo
${PYSITELIB}/sklearn/decomposition/base.py
${PYSITELIB}/sklearn/decomposition/base.pyc
${PYSITELIB}/sklearn/decomposition/base.pyo
-${PYSITELIB}/sklearn/decomposition/cdnmf_fast.so
+${PYSITELIB}/sklearn/decomposition/cdnmf_fast.py
+${PYSITELIB}/sklearn/decomposition/cdnmf_fast.pyc
+${PYSITELIB}/sklearn/decomposition/cdnmf_fast.pyo
${PYSITELIB}/sklearn/decomposition/dict_learning.py
${PYSITELIB}/sklearn/decomposition/dict_learning.pyc
${PYSITELIB}/sklearn/decomposition/dict_learning.pyo
@@ -384,6 +513,9 @@
${PYSITELIB}/sklearn/decomposition/online_lda.py
${PYSITELIB}/sklearn/decomposition/online_lda.pyc
${PYSITELIB}/sklearn/decomposition/online_lda.pyo
+${PYSITELIB}/sklearn/decomposition/online_lda_fast.py
+${PYSITELIB}/sklearn/decomposition/online_lda_fast.pyc
+${PYSITELIB}/sklearn/decomposition/online_lda_fast.pyo
${PYSITELIB}/sklearn/decomposition/pca.py
${PYSITELIB}/sklearn/decomposition/pca.pyc
${PYSITELIB}/sklearn/decomposition/pca.pyo
@@ -438,6 +570,18 @@
${PYSITELIB}/sklearn/ensemble/__init__.py
${PYSITELIB}/sklearn/ensemble/__init__.pyc
${PYSITELIB}/sklearn/ensemble/__init__.pyo
+${PYSITELIB}/sklearn/ensemble/_bagging.py
+${PYSITELIB}/sklearn/ensemble/_bagging.pyc
+${PYSITELIB}/sklearn/ensemble/_bagging.pyo
+${PYSITELIB}/sklearn/ensemble/_base.py
+${PYSITELIB}/sklearn/ensemble/_base.pyc
+${PYSITELIB}/sklearn/ensemble/_base.pyo
+${PYSITELIB}/sklearn/ensemble/_forest.py
+${PYSITELIB}/sklearn/ensemble/_forest.pyc
+${PYSITELIB}/sklearn/ensemble/_forest.pyo
+${PYSITELIB}/sklearn/ensemble/_gb.py
+${PYSITELIB}/sklearn/ensemble/_gb.pyc
+${PYSITELIB}/sklearn/ensemble/_gb.pyo
${PYSITELIB}/sklearn/ensemble/_gb_losses.py
${PYSITELIB}/sklearn/ensemble/_gb_losses.pyc
${PYSITELIB}/sklearn/ensemble/_gb_losses.pyo
@@ -452,6 +596,8 @@
${PYSITELIB}/sklearn/ensemble/_hist_gradient_boosting/binning.py
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