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[pkgsrc/trunk]: pkgsrc/math/R Update to 3.6.1

branches:  trunk
changeset: 337889:deaaad7a9549
user:      wen <>
date:      Wed Aug 14 14:36:59 2019 +0000

Update to 3.6.1

Upstream changes:


    * The default detection of the shell variable libNN is overridden
      for derivatives of Debian Linux, some of which have started to
      have a /usr/lib64 directory.  (E.g. Ubuntu 19.04.)  As before, it
      can be specified in


    * R CMD config knows the values of AR and RANLIB, often set for LTO


    * The use of a character vector with .Fortran() is formally
      deprecated and gives a non-portability warning.  (It has long
      been strongly discouraged in 'Writing R Extensions'.)


    * On Windows, GUI package installation via menuInstallPkgs() works
      again, thanks to Len Weil's and Duncan Murdoch's PR#17556.

    * R CMD check on data() fixing PR#17558 thanks to Duncan Murdoch.

    * quasi(*, variance = list(..)) now works more efficiently, and
      should work in all cases fixing PR#17560.  Further, quasi(var =
      mu(1-mu)) and quasi(var = "mu ^ 3") now work, and quasi(variance
      = "log(mu)") now gives a correct error message.

    * Creation of lazy loading database during package installation is
      again robust to Rprofile changing the current working directory

    * boxplot(y ~ f, horizontal=TRUE) now produces correct x- and

    * allows to keep <NA> levels from factor columns
      (PR#17562) via new option factor.exclude.

      Additionally, it works in one more case with matrix-columns which
      had been reported on 2017-01-16 by Krzysztof Banas.

    * Correct messaging in C++ pragma checks in tools code for R CMD
      check, fixing PR#17566 thanks to Xavier Robin.

    * print()ing and auto-printing no longer differs for functions with
      a user defined print.function, thanks to Bill Dunlap's report.

    * On Windows, writeClipboard(.., format = <n>) now does correctly
      pass format to the underlying C code, thanks to a bug report
      (with patch) by Jenny Bryan.

    * treats 1D arrays the same as vectors, PR#17570.

    * Improvements in smoothEnds(x, *) working with NAs (towards
      runmed() working in that case, in the next version of R).

    * vcov(glm(<quasi>), dispersion = *) works correctly again, fixing
      PR#17571 thanks to Pavel Krivitsky.

    * R CMD INSTALL of binary packages on Windows now works also with
      per-directory locking.

    * R CMD INSTALL and install.packages() on Windows are now more
      robust against a locked file in an earlier installation of the
      package to be installed.  The default value of option
      install.lock on Windows has been changed to TRUE.

    * On Unix alikes (when readline is active), only expand tilde (~)
      file names starting with a tilde, instead of almost all tildes.

    * In R documentation (*.Rd) files, \item [..] is no longer treated
      specially when rendered in LaTeX and hence pdf, but rather shows
      the brackets in all cases.


 math/R/Makefile |   5 ++---
 math/R/distinfo |  10 +++++-----
 2 files changed, 7 insertions(+), 8 deletions(-)

diffs (31 lines):

diff -r f67e468843d8 -r deaaad7a9549 math/R/Makefile
--- a/math/R/Makefile   Wed Aug 14 14:20:05 2019 +0000
+++ b/math/R/Makefile   Wed Aug 14 14:36:59 2019 +0000
@@ -1,7 +1,6 @@
-# $NetBSD: Makefile,v 1.201 2019/08/11 13:21:43 wiz Exp $
+# $NetBSD: Makefile,v 1.202 2019/08/14 14:36:59 wen Exp $
-DISTNAME=      R-3.6.0
+DISTNAME=      R-3.6.1
 CATEGORIES=    math
diff -r f67e468843d8 -r deaaad7a9549 math/R/distinfo
--- a/math/R/distinfo   Wed Aug 14 14:20:05 2019 +0000
+++ b/math/R/distinfo   Wed Aug 14 14:36:59 2019 +0000
@@ -1,9 +1,9 @@
-$NetBSD: distinfo,v 1.84 2019/06/09 13:39:12 wen Exp $
+$NetBSD: distinfo,v 1.85 2019/08/14 14:36:59 wen Exp $
-SHA1 (R-3.6.0.tar.gz) = c8a1949e763d22ec3b1dbdd251afcb0f1d2d5c76
-RMD160 (R-3.6.0.tar.gz) = 56401ce9f413e07f3ff8afa74fb788484806fb16
-SHA512 (R-3.6.0.tar.gz) = b2e17b909b6387abb964492e2e9370f913295ca7ac99bab0e965c43ed3c4635e27468c326fb2bca3c529b03c731b0170d9e777a194ad4d6c5a983c050223d8c8
-Size (R-3.6.0.tar.gz) = 30449618 bytes
+SHA1 (R-3.6.1.tar.gz) = 0041c025561b5622e3dc88cdedf82334620cd3c2
+RMD160 (R-3.6.1.tar.gz) = 0944f67117372acf342251c988d83b83839deccf
+SHA512 (R-3.6.1.tar.gz) = fae7d114437c4b5d10fcb2a4265acd707ad2a4810eeb7c11e25caca1d85093a1495c2e13457b4894c1508830ec1b2be95379b7d54007cf3e574c2a9eea28ef80
+Size (R-3.6.1.tar.gz) = 30463021 bytes
 SHA1 ( = 2732e3e0a39ee64ae4cba5c476f4754ecbd14942
 SHA1 (patch-m4_R.m4) = 704d5514e10adf0b5217bb71b06f44a612eca6e0
 SHA1 (patch-m4_cairo.m4) = a0c4ec68d7d6d3a73a2a24481d0dee8c192bf154

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