[pkgsrc/trunk]: pkgsrc R-acepack: initial commit.

[brook <brook%pkgsrc.org@localhost>]

details:   https://anonhg.NetBSD.org/pkgsrc/rev/6f4106a177f0
branches:  trunk
changeset: 337040:6f4106a177f0
user:      brook <brook%pkgsrc.org@localhost>
date:      Wed Jul 31 13:09:36 2019 +0000

description:
R-acepack: initial commit.

Two nonparametric methods for multiple regression transform selection
are provided. The first, Alternative Conditional Expectations (ACE),
is an algorithm to find the fixed point of maximal correlation, i.e.
it finds a set of transformed response variables that maximizes R^2
using smoothing functions [see Breiman, L., and J.H. Friedman. 1985.
"Estimating Optimal Transformations for Multiple Regression and
Correlation". Journal of the American Statistical Association.
80:580-598. <doi:10.1080/01621459.1985.10478157>]. Also included is
the Additivity Variance Stabilization (AVAS) method which works better
than ACE when correlation is low [see Tibshirani, R.. 1986.
"Estimating Transformations for Regression via Additivity and Variance
Stabilization". Journal of the American Statistical Association.
83:394-405. <doi:10.1080/01621459.1988.10478610>]. A good introduction
to these two methods is in chapter 16 of Frank Harrel's "Regression
Modeling Strategies" in the Springer Series in Statistics.

diffstat:

 doc/CHANGES-2019        |   3 ++-
 math/Makefile           |   3 ++-
 math/R-acepack/DESCR    |  15 +++++++++++++++
 math/R-acepack/Makefile |  16 ++++++++++++++++
 math/R-acepack/distinfo |   6 ++++++
 5 files changed, 41 insertions(+), 2 deletions(-)

diffs (80 lines):

diff -r dbd7bf0c4e29 -r 6f4106a177f0 doc/CHANGES-2019
--- a/doc/CHANGES-2019  Wed Jul 31 13:07:38 2019 +0000
+++ b/doc/CHANGES-2019  Wed Jul 31 13:09:36 2019 +0000
@@ -1,4 +1,4 @@
-$NetBSD: CHANGES-2019,v 1.3102 2019/07/31 13:07:38 brook Exp $
+$NetBSD: CHANGES-2019,v 1.3103 2019/07/31 13:09:36 brook Exp $
 
 Changes to the packages collection and infrastructure in 2019:
 
@@ -5059,3 +5059,4 @@
        Added math/R-Formula version 1.2.3 [brook 2019-07-31]
        Added math/R-RandomFieldsUtils version 0.5.3 [brook 2019-07-31]
        Added math/R-RcmdrMisc version 2.5.1 [brook 2019-07-31]
+       Added math/R-acepack version 1.4.1 [brook 2019-07-31]
diff -r dbd7bf0c4e29 -r 6f4106a177f0 math/Makefile
--- a/math/Makefile     Wed Jul 31 13:07:38 2019 +0000
+++ b/math/Makefile     Wed Jul 31 13:09:36 2019 +0000
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.412 2019/07/31 13:07:38 brook Exp $
+# $NetBSD: Makefile,v 1.413 2019/07/31 13:09:36 brook Exp $
 
 COMMENT=       Mathematics
 
@@ -28,6 +28,7 @@
 SUBDIR+=       R-VGAM
 SUBDIR+=       R-XML
 SUBDIR+=       R-abind
+SUBDIR+=       R-acepack
 SUBDIR+=       R-akima
 SUBDIR+=       R-aplpack
 SUBDIR+=       R-bbmle
diff -r dbd7bf0c4e29 -r 6f4106a177f0 math/R-acepack/DESCR
--- /dev/null   Thu Jan 01 00:00:00 1970 +0000
+++ b/math/R-acepack/DESCR      Wed Jul 31 13:09:36 2019 +0000
@@ -0,0 +1,15 @@
+Two nonparametric methods for multiple regression transform selection
+are provided. The first, Alternative Conditional Expectations (ACE),
+is an algorithm to find the fixed point of maximal correlation, i.e.
+it finds a set of transformed response variables that maximizes R^2
+using smoothing functions [see Breiman, L., and J.H. Friedman. 1985.
+"Estimating Optimal Transformations for Multiple Regression and
+Correlation". Journal of the American Statistical Association.
+80:580-598. <doi:10.1080/01621459.1985.10478157>]. Also included is
+the Additivity Variance Stabilization (AVAS) method which works better
+than ACE when correlation is low [see Tibshirani, R.. 1986.
+"Estimating Transformations for Regression via Additivity and Variance
+Stabilization". Journal of the American Statistical Association.
+83:394-405. <doi:10.1080/01621459.1988.10478610>]. A good introduction
+to these two methods is in chapter 16 of Frank Harrel's "Regression
+Modeling Strategies" in the Springer Series in Statistics.
diff -r dbd7bf0c4e29 -r 6f4106a177f0 math/R-acepack/Makefile
--- /dev/null   Thu Jan 01 00:00:00 1970 +0000
+++ b/math/R-acepack/Makefile   Wed Jul 31 13:09:36 2019 +0000
@@ -0,0 +1,16 @@
+# $NetBSD: Makefile,v 1.1 2019/07/31 13:09:36 brook Exp $
+
+CATEGORIES=    math R
+
+MAINTAINER=    pkgsrc-users%NetBSD.org@localhost
+HOMEPAGE=      ${R_HOMEPAGE_BASE}/acepack/
+COMMENT=       ACE and AVAS for selecting multiple regression transformations
+LICENSE=       mit
+
+R_PKGNAME=     acepack
+R_PKGVER=      1.4.1
+
+USE_LANGUAGES= c fortran
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"
diff -r dbd7bf0c4e29 -r 6f4106a177f0 math/R-acepack/distinfo
--- /dev/null   Thu Jan 01 00:00:00 1970 +0000
+++ b/math/R-acepack/distinfo   Wed Jul 31 13:09:36 2019 +0000
@@ -0,0 +1,6 @@
+$NetBSD: distinfo,v 1.1 2019/07/31 13:09:36 brook Exp $
+
+SHA1 (R/acepack_1.4.1.tar.gz) = b8f34f23f133fb62b40ab579c69e8c9131934f31
+RMD160 (R/acepack_1.4.1.tar.gz) = 23499d6aa9c41ec3575cc2209559e64af61bfb7f
+SHA512 (R/acepack_1.4.1.tar.gz) = e6787d653224043d0fac8b7e63a8b8060320fc1e4c6ab76b20ce3e7712cbd0f89af8731b383ceb90f9be4381a72eb965cad84e979cb8c935318fecf6d3f9ee88
+Size (R/acepack_1.4.1.tar.gz) = 34848 bytes