[pkgsrc/trunk]: pkgsrc/math/py-statsmodels py-statsmodels: updated to 0.9.0

[adam <adam%pkgsrc.org@localhost>]

details:   https://anonhg.NetBSD.org/pkgsrc/rev/abc317aa1250
branches:  trunk
changeset: 310095:abc317aa1250
user:      adam <adam%pkgsrc.org@localhost>
date:      Thu Jul 05 13:09:11 2018 +0000

description:
py-statsmodels: updated to 0.9.0

0.9.0:

The Highlights
--------------
statespace refactoring, Markov Switching Kim smoother
3 Google summer of code (GSOC) projects merged - distributed estimation - VECM and enhancements to VAR (including cointegration test) - new count models: GeneralizedPoisson, zero inflated models
Bayesian mixed GLM
Gaussian Imputation
new multivariate methods: factor analysis, MANOVA, repeated measures within ANOVA
GLM var_weights in addition to freq_weights
Holt-Winters and Exponential Smoothing

diffstat:

 math/py-statsmodels/Makefile |    8 +-
 math/py-statsmodels/PLIST    |  478 +++++++++++++++++++++++++++++++++++++++++-
 math/py-statsmodels/distinfo |   10 +-
 3 files changed, 466 insertions(+), 30 deletions(-)

diffs (truncated from 942 to 300 lines):

diff -r 05f1ba11ff04 -r abc317aa1250 math/py-statsmodels/Makefile
--- a/math/py-statsmodels/Makefile      Thu Jul 05 11:39:37 2018 +0000
+++ b/math/py-statsmodels/Makefile      Thu Jul 05 13:09:11 2018 +0000
@@ -1,12 +1,12 @@
-# $NetBSD: Makefile,v 1.2 2017/05/21 09:07:37 adam Exp $
+# $NetBSD: Makefile,v 1.3 2018/07/05 13:09:11 adam Exp $
 
-DISTNAME=      statsmodels-0.8.0
+DISTNAME=      statsmodels-0.9.0
 PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
-CATEGORIES=    math
+CATEGORIES=    math python
 MASTER_SITES=  ${MASTER_SITE_PYPI:=s/statsmodels/}
 
 MAINTAINER=    jihbed.research%gmail.com@localhost
-HOMEPAGE=      http://statsmodels.sourceforge.net/
+HOMEPAGE=      http://www.statsmodels.org/stable/index.html
 COMMENT=       Statistical computations and models for use with SciPy
 LICENSE=       modified-bsd
 
diff -r 05f1ba11ff04 -r abc317aa1250 math/py-statsmodels/PLIST
--- a/math/py-statsmodels/PLIST Thu Jul 05 11:39:37 2018 +0000
+++ b/math/py-statsmodels/PLIST Thu Jul 05 13:09:11 2018 +0000
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.2 2017/05/21 09:07:37 adam Exp $
+@comment $NetBSD: PLIST,v 1.3 2018/07/05 13:09:11 adam Exp $
 ${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
 ${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
 ${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
@@ -26,6 +26,9 @@
 ${PYSITELIB}/statsmodels/base/data.py
 ${PYSITELIB}/statsmodels/base/data.pyc
 ${PYSITELIB}/statsmodels/base/data.pyo
+${PYSITELIB}/statsmodels/base/distributed_estimation.py
+${PYSITELIB}/statsmodels/base/distributed_estimation.pyc
+${PYSITELIB}/statsmodels/base/distributed_estimation.pyo
 ${PYSITELIB}/statsmodels/base/elastic_net.py
 ${PYSITELIB}/statsmodels/base/elastic_net.pyc
 ${PYSITELIB}/statsmodels/base/elastic_net.pyo
@@ -50,15 +53,27 @@
 ${PYSITELIB}/statsmodels/base/tests/test_data.py
 ${PYSITELIB}/statsmodels/base/tests/test_data.pyc
 ${PYSITELIB}/statsmodels/base/tests/test_data.pyo
+${PYSITELIB}/statsmodels/base/tests/test_distributed_estimation.py
+${PYSITELIB}/statsmodels/base/tests/test_distributed_estimation.pyc
+${PYSITELIB}/statsmodels/base/tests/test_distributed_estimation.pyo
 ${PYSITELIB}/statsmodels/base/tests/test_generic_methods.py
 ${PYSITELIB}/statsmodels/base/tests/test_generic_methods.pyc
 ${PYSITELIB}/statsmodels/base/tests/test_generic_methods.pyo
 ${PYSITELIB}/statsmodels/base/tests/test_optimize.py
 ${PYSITELIB}/statsmodels/base/tests/test_optimize.pyc
 ${PYSITELIB}/statsmodels/base/tests/test_optimize.pyo
+${PYSITELIB}/statsmodels/base/tests/test_predict.py
+${PYSITELIB}/statsmodels/base/tests/test_predict.pyc
+${PYSITELIB}/statsmodels/base/tests/test_predict.pyo
 ${PYSITELIB}/statsmodels/base/tests/test_shrink_pickle.py
 ${PYSITELIB}/statsmodels/base/tests/test_shrink_pickle.pyc
 ${PYSITELIB}/statsmodels/base/tests/test_shrink_pickle.pyo
+${PYSITELIB}/statsmodels/base/tests/test_transform.py
+${PYSITELIB}/statsmodels/base/tests/test_transform.pyc
+${PYSITELIB}/statsmodels/base/tests/test_transform.pyo
+${PYSITELIB}/statsmodels/base/transform.py
+${PYSITELIB}/statsmodels/base/transform.pyc
+${PYSITELIB}/statsmodels/base/transform.pyo
 ${PYSITELIB}/statsmodels/base/wrapper.py
 ${PYSITELIB}/statsmodels/base/wrapper.pyc
 ${PYSITELIB}/statsmodels/base/wrapper.pyo
@@ -86,6 +101,9 @@
 ${PYSITELIB}/statsmodels/compat/scipy.py
 ${PYSITELIB}/statsmodels/compat/scipy.pyc
 ${PYSITELIB}/statsmodels/compat/scipy.pyo
+${PYSITELIB}/statsmodels/compat/testing.py
+${PYSITELIB}/statsmodels/compat/testing.pyc
+${PYSITELIB}/statsmodels/compat/testing.pyo
 ${PYSITELIB}/statsmodels/compat/tests/__init__.py
 ${PYSITELIB}/statsmodels/compat/tests/__init__.pyc
 ${PYSITELIB}/statsmodels/compat/tests/__init__.pyo
@@ -178,6 +196,7 @@
 ${PYSITELIB}/statsmodels/datasets/fair/data.pyc
 ${PYSITELIB}/statsmodels/datasets/fair/data.pyo
 ${PYSITELIB}/statsmodels/datasets/fair/fair.csv
+${PYSITELIB}/statsmodels/datasets/fair/fair_pt.csv
 ${PYSITELIB}/statsmodels/datasets/fertility/__init__.py
 ${PYSITELIB}/statsmodels/datasets/fertility/__init__.pyc
 ${PYSITELIB}/statsmodels/datasets/fertility/__init__.pyo
@@ -199,6 +218,14 @@
 ${PYSITELIB}/statsmodels/datasets/heart/data.pyc
 ${PYSITELIB}/statsmodels/datasets/heart/data.pyo
 ${PYSITELIB}/statsmodels/datasets/heart/heart.csv
+${PYSITELIB}/statsmodels/datasets/interest_inflation/E6.csv
+${PYSITELIB}/statsmodels/datasets/interest_inflation/E6_jmulti.csv
+${PYSITELIB}/statsmodels/datasets/interest_inflation/__init__.py
+${PYSITELIB}/statsmodels/datasets/interest_inflation/__init__.pyc
+${PYSITELIB}/statsmodels/datasets/interest_inflation/__init__.pyo
+${PYSITELIB}/statsmodels/datasets/interest_inflation/data.py
+${PYSITELIB}/statsmodels/datasets/interest_inflation/data.pyc
+${PYSITELIB}/statsmodels/datasets/interest_inflation/data.pyo
 ${PYSITELIB}/statsmodels/datasets/longley/__init__.py
 ${PYSITELIB}/statsmodels/datasets/longley/__init__.pyc
 ${PYSITELIB}/statsmodels/datasets/longley/__init__.pyo
@@ -305,6 +332,12 @@
 ${PYSITELIB}/statsmodels/discrete/__init__.py
 ${PYSITELIB}/statsmodels/discrete/__init__.pyc
 ${PYSITELIB}/statsmodels/discrete/__init__.pyo
+${PYSITELIB}/statsmodels/discrete/_diagnostics_count.py
+${PYSITELIB}/statsmodels/discrete/_diagnostics_count.pyc
+${PYSITELIB}/statsmodels/discrete/_diagnostics_count.pyo
+${PYSITELIB}/statsmodels/discrete/count_model.py
+${PYSITELIB}/statsmodels/discrete/count_model.pyc
+${PYSITELIB}/statsmodels/discrete/count_model.pyo
 ${PYSITELIB}/statsmodels/discrete/discrete_margins.py
 ${PYSITELIB}/statsmodels/discrete/discrete_margins.pyc
 ${PYSITELIB}/statsmodels/discrete/discrete_margins.pyo
@@ -323,6 +356,9 @@
 ${PYSITELIB}/statsmodels/discrete/tests/results/phat_mnlogit.csv
 ${PYSITELIB}/statsmodels/discrete/tests/results/poisson_resid.csv
 ${PYSITELIB}/statsmodels/discrete/tests/results/predict_prob_poisson.csv
+${PYSITELIB}/statsmodels/discrete/tests/results/results_count_margins.py
+${PYSITELIB}/statsmodels/discrete/tests/results/results_count_margins.pyc
+${PYSITELIB}/statsmodels/discrete/tests/results/results_count_margins.pyo
 ${PYSITELIB}/statsmodels/discrete/tests/results/results_count_robust_cluster.py
 ${PYSITELIB}/statsmodels/discrete/tests/results/results_count_robust_cluster.pyc
 ${PYSITELIB}/statsmodels/discrete/tests/results/results_count_robust_cluster.pyo
@@ -336,20 +372,33 @@
 ${PYSITELIB}/statsmodels/discrete/tests/results/results_poisson_constrained.pyc
 ${PYSITELIB}/statsmodels/discrete/tests/results/results_poisson_constrained.pyo
 ${PYSITELIB}/statsmodels/discrete/tests/results/ships.csv
+${PYSITELIB}/statsmodels/discrete/tests/results/sm3533.csv
 ${PYSITELIB}/statsmodels/discrete/tests/results/yhat_mnlogit.csv
 ${PYSITELIB}/statsmodels/discrete/tests/results/yhat_poisson.csv
 ${PYSITELIB}/statsmodels/discrete/tests/test_constrained.py
 ${PYSITELIB}/statsmodels/discrete/tests/test_constrained.pyc
 ${PYSITELIB}/statsmodels/discrete/tests/test_constrained.pyo
+${PYSITELIB}/statsmodels/discrete/tests/test_count_model.py
+${PYSITELIB}/statsmodels/discrete/tests/test_count_model.pyc
+${PYSITELIB}/statsmodels/discrete/tests/test_count_model.pyo
+${PYSITELIB}/statsmodels/discrete/tests/test_diagnostic.py
+${PYSITELIB}/statsmodels/discrete/tests/test_diagnostic.pyc
+${PYSITELIB}/statsmodels/discrete/tests/test_diagnostic.pyo
 ${PYSITELIB}/statsmodels/discrete/tests/test_discrete.py
 ${PYSITELIB}/statsmodels/discrete/tests/test_discrete.pyc
 ${PYSITELIB}/statsmodels/discrete/tests/test_discrete.pyo
+${PYSITELIB}/statsmodels/discrete/tests/test_margins.py
+${PYSITELIB}/statsmodels/discrete/tests/test_margins.pyc
+${PYSITELIB}/statsmodels/discrete/tests/test_margins.pyo
 ${PYSITELIB}/statsmodels/discrete/tests/test_sandwich_cov.py
 ${PYSITELIB}/statsmodels/discrete/tests/test_sandwich_cov.pyc
 ${PYSITELIB}/statsmodels/discrete/tests/test_sandwich_cov.pyo
 ${PYSITELIB}/statsmodels/distributions/__init__.py
 ${PYSITELIB}/statsmodels/distributions/__init__.pyc
 ${PYSITELIB}/statsmodels/distributions/__init__.pyo
+${PYSITELIB}/statsmodels/distributions/discrete.py
+${PYSITELIB}/statsmodels/distributions/discrete.pyc
+${PYSITELIB}/statsmodels/distributions/discrete.pyo
 ${PYSITELIB}/statsmodels/distributions/edgeworth.py
 ${PYSITELIB}/statsmodels/distributions/edgeworth.pyc
 ${PYSITELIB}/statsmodels/distributions/edgeworth.pyo
@@ -362,6 +411,9 @@
 ${PYSITELIB}/statsmodels/distributions/tests/__init__.py
 ${PYSITELIB}/statsmodels/distributions/tests/__init__.pyc
 ${PYSITELIB}/statsmodels/distributions/tests/__init__.pyo
+${PYSITELIB}/statsmodels/distributions/tests/test_discrete.py
+${PYSITELIB}/statsmodels/distributions/tests/test_discrete.pyc
+${PYSITELIB}/statsmodels/distributions/tests/test_discrete.pyo
 ${PYSITELIB}/statsmodels/distributions/tests/test_ecdf.py
 ${PYSITELIB}/statsmodels/distributions/tests/test_ecdf.pyc
 ${PYSITELIB}/statsmodels/distributions/tests/test_ecdf.pyo
@@ -374,6 +426,9 @@
 ${PYSITELIB}/statsmodels/duration/__init__.py
 ${PYSITELIB}/statsmodels/duration/__init__.pyc
 ${PYSITELIB}/statsmodels/duration/__init__.pyo
+${PYSITELIB}/statsmodels/duration/_kernel_estimates.py
+${PYSITELIB}/statsmodels/duration/_kernel_estimates.pyc
+${PYSITELIB}/statsmodels/duration/_kernel_estimates.pyo
 ${PYSITELIB}/statsmodels/duration/api.py
 ${PYSITELIB}/statsmodels/duration/api.pyc
 ${PYSITELIB}/statsmodels/duration/api.pyo
@@ -486,6 +541,9 @@
 ${PYSITELIB}/statsmodels/genmod/api.py
 ${PYSITELIB}/statsmodels/genmod/api.pyc
 ${PYSITELIB}/statsmodels/genmod/api.pyo
+${PYSITELIB}/statsmodels/genmod/bayes_mixed_glm.py
+${PYSITELIB}/statsmodels/genmod/bayes_mixed_glm.pyc
+${PYSITELIB}/statsmodels/genmod/bayes_mixed_glm.pyo
 ${PYSITELIB}/statsmodels/genmod/cov_struct.py
 ${PYSITELIB}/statsmodels/genmod/cov_struct.pyc
 ${PYSITELIB}/statsmodels/genmod/cov_struct.pyo
@@ -556,18 +614,31 @@
 ${PYSITELIB}/statsmodels/genmod/tests/results/inv_gaussian.csv
 ${PYSITELIB}/statsmodels/genmod/tests/results/iris.csv
 ${PYSITELIB}/statsmodels/genmod/tests/results/medparlogresids.csv
+${PYSITELIB}/statsmodels/genmod/tests/results/res_R_var_weight.py
+${PYSITELIB}/statsmodels/genmod/tests/results/res_R_var_weight.pyc
+${PYSITELIB}/statsmodels/genmod/tests/results/res_R_var_weight.pyo
 ${PYSITELIB}/statsmodels/genmod/tests/results/results_glm.py
 ${PYSITELIB}/statsmodels/genmod/tests/results/results_glm.pyc
 ${PYSITELIB}/statsmodels/genmod/tests/results/results_glm.pyo
 ${PYSITELIB}/statsmodels/genmod/tests/results/results_glm_poisson_weights.py
 ${PYSITELIB}/statsmodels/genmod/tests/results/results_glm_poisson_weights.pyc
 ${PYSITELIB}/statsmodels/genmod/tests/results/results_glm_poisson_weights.pyo
+${PYSITELIB}/statsmodels/genmod/tests/results/results_tweedie_aweights_nonrobust.csv
 ${PYSITELIB}/statsmodels/genmod/tests/results/stata_cancer_glm.csv
 ${PYSITELIB}/statsmodels/genmod/tests/results/stata_lbw_glm.csv
 ${PYSITELIB}/statsmodels/genmod/tests/results/stata_medpar1_glm.csv
+${PYSITELIB}/statsmodels/genmod/tests/test_bayes_mixed_glm.py
+${PYSITELIB}/statsmodels/genmod/tests/test_bayes_mixed_glm.pyc
+${PYSITELIB}/statsmodels/genmod/tests/test_bayes_mixed_glm.pyo
+${PYSITELIB}/statsmodels/genmod/tests/test_constrained.py
+${PYSITELIB}/statsmodels/genmod/tests/test_constrained.pyc
+${PYSITELIB}/statsmodels/genmod/tests/test_constrained.pyo
 ${PYSITELIB}/statsmodels/genmod/tests/test_gee.py
 ${PYSITELIB}/statsmodels/genmod/tests/test_gee.pyc
 ${PYSITELIB}/statsmodels/genmod/tests/test_gee.pyo
+${PYSITELIB}/statsmodels/genmod/tests/test_gee_glm.py
+${PYSITELIB}/statsmodels/genmod/tests/test_gee_glm.pyc
+${PYSITELIB}/statsmodels/genmod/tests/test_gee_glm.pyo
 ${PYSITELIB}/statsmodels/genmod/tests/test_glm.py
 ${PYSITELIB}/statsmodels/genmod/tests/test_glm.pyc
 ${PYSITELIB}/statsmodels/genmod/tests/test_glm.pyo
@@ -580,6 +651,9 @@
 ${PYSITELIB}/statsmodels/graphics/_regressionplots_doc.py
 ${PYSITELIB}/statsmodels/graphics/_regressionplots_doc.pyc
 ${PYSITELIB}/statsmodels/graphics/_regressionplots_doc.pyo
+${PYSITELIB}/statsmodels/graphics/agreement.py
+${PYSITELIB}/statsmodels/graphics/agreement.pyc
+${PYSITELIB}/statsmodels/graphics/agreement.pyo
 ${PYSITELIB}/statsmodels/graphics/api.py
 ${PYSITELIB}/statsmodels/graphics/api.pyc
 ${PYSITELIB}/statsmodels/graphics/api.pyo
@@ -616,6 +690,9 @@
 ${PYSITELIB}/statsmodels/graphics/tests/__init__.py
 ${PYSITELIB}/statsmodels/graphics/tests/__init__.pyc
 ${PYSITELIB}/statsmodels/graphics/tests/__init__.pyo
+${PYSITELIB}/statsmodels/graphics/tests/test_agreement.py
+${PYSITELIB}/statsmodels/graphics/tests/test_agreement.pyc
+${PYSITELIB}/statsmodels/graphics/tests/test_agreement.pyo
 ${PYSITELIB}/statsmodels/graphics/tests/test_boxplots.py
 ${PYSITELIB}/statsmodels/graphics/tests/test_boxplots.pyc
 ${PYSITELIB}/statsmodels/graphics/tests/test_boxplots.pyo
@@ -655,6 +732,9 @@
 ${PYSITELIB}/statsmodels/imputation/__init__.py
 ${PYSITELIB}/statsmodels/imputation/__init__.pyc
 ${PYSITELIB}/statsmodels/imputation/__init__.pyo
+${PYSITELIB}/statsmodels/imputation/bayes_mi.py
+${PYSITELIB}/statsmodels/imputation/bayes_mi.pyc
+${PYSITELIB}/statsmodels/imputation/bayes_mi.pyo
 ${PYSITELIB}/statsmodels/imputation/mice.py
 ${PYSITELIB}/statsmodels/imputation/mice.pyc
 ${PYSITELIB}/statsmodels/imputation/mice.pyo
@@ -664,6 +744,9 @@
 ${PYSITELIB}/statsmodels/imputation/tests/__init__.py
 ${PYSITELIB}/statsmodels/imputation/tests/__init__.pyc
 ${PYSITELIB}/statsmodels/imputation/tests/__init__.pyo
+${PYSITELIB}/statsmodels/imputation/tests/test_bayes_mi.py
+${PYSITELIB}/statsmodels/imputation/tests/test_bayes_mi.pyc
+${PYSITELIB}/statsmodels/imputation/tests/test_bayes_mi.pyo
 ${PYSITELIB}/statsmodels/imputation/tests/test_mice.py
 ${PYSITELIB}/statsmodels/imputation/tests/test_mice.pyc
 ${PYSITELIB}/statsmodels/imputation/tests/test_mice.pyo
@@ -726,6 +809,9 @@
 ${PYSITELIB}/statsmodels/iolib/tests/test_summary.py
 ${PYSITELIB}/statsmodels/iolib/tests/test_summary.pyc
 ${PYSITELIB}/statsmodels/iolib/tests/test_summary.pyo
+${PYSITELIB}/statsmodels/iolib/tests/test_summary2.py
+${PYSITELIB}/statsmodels/iolib/tests/test_summary2.pyc
+${PYSITELIB}/statsmodels/iolib/tests/test_summary2.pyo
 ${PYSITELIB}/statsmodels/iolib/tests/test_summary_old.py
 ${PYSITELIB}/statsmodels/iolib/tests/test_summary_old.pyc
 ${PYSITELIB}/statsmodels/iolib/tests/test_summary_old.pyo
@@ -774,9 +860,45 @@
 ${PYSITELIB}/statsmodels/multivariate/__init__.py
 ${PYSITELIB}/statsmodels/multivariate/__init__.pyc
 ${PYSITELIB}/statsmodels/multivariate/__init__.pyo
+${PYSITELIB}/statsmodels/multivariate/api.py
+${PYSITELIB}/statsmodels/multivariate/api.pyc
+${PYSITELIB}/statsmodels/multivariate/api.pyo
+${PYSITELIB}/statsmodels/multivariate/cancorr.py
+${PYSITELIB}/statsmodels/multivariate/cancorr.pyc
+${PYSITELIB}/statsmodels/multivariate/cancorr.pyo
+${PYSITELIB}/statsmodels/multivariate/factor.py
+${PYSITELIB}/statsmodels/multivariate/factor.pyc
+${PYSITELIB}/statsmodels/multivariate/factor.pyo
+${PYSITELIB}/statsmodels/multivariate/factor_rotation/__init__.py
+${PYSITELIB}/statsmodels/multivariate/factor_rotation/__init__.pyc
+${PYSITELIB}/statsmodels/multivariate/factor_rotation/__init__.pyo
+${PYSITELIB}/statsmodels/multivariate/factor_rotation/_analytic_rotation.py
+${PYSITELIB}/statsmodels/multivariate/factor_rotation/_analytic_rotation.pyc
+${PYSITELIB}/statsmodels/multivariate/factor_rotation/_analytic_rotation.pyo
+${PYSITELIB}/statsmodels/multivariate/factor_rotation/_gpa_rotation.py
+${PYSITELIB}/statsmodels/multivariate/factor_rotation/_gpa_rotation.pyc
+${PYSITELIB}/statsmodels/multivariate/factor_rotation/_gpa_rotation.pyo
+${PYSITELIB}/statsmodels/multivariate/factor_rotation/_wrappers.py
+${PYSITELIB}/statsmodels/multivariate/factor_rotation/_wrappers.pyc
+${PYSITELIB}/statsmodels/multivariate/factor_rotation/_wrappers.pyo
+${PYSITELIB}/statsmodels/multivariate/factor_rotation/tests/__init__.py
+${PYSITELIB}/statsmodels/multivariate/factor_rotation/tests/__init__.pyc
+${PYSITELIB}/statsmodels/multivariate/factor_rotation/tests/__init__.pyo
+${PYSITELIB}/statsmodels/multivariate/factor_rotation/tests/test_rotation.py
+${PYSITELIB}/statsmodels/multivariate/factor_rotation/tests/test_rotation.pyc
+${PYSITELIB}/statsmodels/multivariate/factor_rotation/tests/test_rotation.pyo