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Re: Unannounced commits
On 12/28/22 16:06, Adam wrote:
I just discovered that biology/htslib and biology/samtools were upgraded without my knowledge immediately before the freeze.
date: 2022-12-13 04:27:03 -0600; author: adam; state: Exp; lines: +8 -10; co
htslib: updated to 1.16
In addition, biology/bcftools was *not* upgraded along with them and is now out of sync with htslib in the quarterly packages.
biology/kallisto also depends on htslib. I see no discussion about this on the mailing lists, and I had no opportunity to test the v1.16 packages before they were committed, or retest kallisto with htslib 1.16.
Please consult with package maintainers before upgrading their packages.
I was planning to upgrade these packages shortly after the freeze to allow ample time for testing before they end up in a quarterly branch.
Did the update broke kallisto and bcftools?
I don't know yet. It may be a few weeks before I can block the time to
thoroughly test them. If I discover any issues at that time, I will let
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