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The problem seems to be that /usr/pkg/gcc6/x86_64--netbsd/lib/ (libstd++ in gcc6-libs) itself references libgcc_s from gcc6:

        -lgcc_s.1 => /usr/pkg/gcc6//lib/./

I don't think this is the problem, but this line in mk/compiler/
.  if empty(PKGPATH:Mdevel/libtool-base) && empty(PKGPATH:Mdevel/binutils) && empty(PKGPATH:Mlang/gcc??)
matches lanng/gcc48 and lang/gcc49, but not lang/gcc5 or lang/gcc6, no?

I added a gcc? expression and am now re-building gcc6 with USE_PKGSRC_GCC_RUNTIME=YES.

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