Subject: Installing SGE problem
To: Ron Chen <firstname.lastname@example.org>
From: Co Thai Ngo <email@example.com>
Date: 09/07/2004 16:36:57
I've got the following problem while trying installing SGE package. Any help to
resolve it is highly appreciated.
gcc -c -O -Wall -DNETBSD -DNETBSD_I386 -DSECURE -I/home/cngo/pkg/include
-DENABLE_438_FIX -I/usr/X11R6/include -DCOMPILE_DC -D__SGE_NO_USERMAPPING__
-I../Xmt310 -Wno-strict-prototypes -Wno-error -DHAVE_MEMMOVE
-DXMT_HAS_STRERROR -I../3rdparty/qmon/Xmt310 -I../3rdparty/qmon/Xbae
-I../3rdparty/qmon/iconlist -I../3rdparty/qmon/ltree -I../3rdparty/qmon/outline
-I../3rdparty/qmon/rowcol -I../3rdparty/qmon/spinbox -I../clients/qmon
-I../3rdparty/qmon/tab -I/usr/X11R6/include ../Xmt310/Xmt/All.c
In file included from ../Xmt310/Xmt/All.c:23:
../Xmt310/Xmt/Xmt.h:56: Xm/Xm.h: No such file or directory
In file included from ../Xmt310/Xmt/All.c:27:
../Xmt310/Xmt/Layout.h:24: Xm/BulletinB.h: No such file or directory
gmake: *** [All.o] Error 1
*** Error code 1
make: stopped in /home/cngo/cvs/NetBSD/pkgsrc/parallel/sge
*** Error code 1
Quoting Ron Chen <firstname.lastname@example.org>:
> SGE support for NetBSD was checked into the project
> cvs for a long time, you just need to get the SGE 5.3
> branch source tree from the SGE project site cvs.
> --- MLH <email@example.com> wrote:
> > > Hi,
> > >
> > > Do you use Sun Grid Engine ? How does it work ?
> > I've checked your website but I
> > > don't see any information about how SGE.
> > >
> > > > for linkage analysis. We are running an
> > SGE-enabled version of
> > > > SOLAR that manages all compute tasks. Currently
> > the cluster is
> > > > composed of MP Athlons and a few experimental
> > Opteron boxes running
> > > > solaris86.
> > We use GridEngine on Solaris/Solaris86. The cluster
> > is all running
> > Solaris86 right now. I had a local student working
> > to port SGE to
> > NetBSD for me last year. Several people were
> > apparently working on
> > it at the same time and it came together, but I've
> > been too busy
> > to do much with a NetBSD cluster right now.
> > SGE is essentially integrated into the front-end of
> > our software.
> > All of tour software can run without SGE. It just
> > make things easier
> > to work iwth a cluster. There is a custom version
> > of SOLAR that
> > embeds the SGE control mechanisms to launch and
> > manage the tasks
> > and we have many other scripts which use SGE to
> > manage custom
> > operations. We haven't implemented any smp-type
> > code. It's just
> > typical task-oriented code that we throw at a bunch
> > of processors
> > at the same time. Much of what we do can be broken
> > down for analysis
> > by marker, chromosome, trait, or individual etc. so
> > it's easier to
> > arrange to have several hundred cpus each run one
> > fairly linear
> > task at a time and report back when done. Not
> > terribly fancy, but
> > quite effective.
> > If you are interested, I can likely put you touch
> > with a couple of
> > people who develop the SGE management facilities.
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Co Thai Ngo
Dept. of Biology
New Mexico State University