py-pybigwig: Add numpy dep, clean up

[Jason Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Mon Dec 18 21:11:50 2023 -0600
Changeset:	dfb3e315efdd1ff1e3d30cca84b8780588558810

Modified Files:
	py-pybigwig/Makefile
	py-pybigwig/distinfo
	py-pybigwig/patches/patch-libBigWig_bwValues.c

Log Message:
py-pybigwig: Add numpy dep, clean up

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=dfb3e315efdd1ff1e3d30cca84b8780588558810

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 py-pybigwig/Makefile                           | 3 ++-
 py-pybigwig/distinfo                           | 2 +-
 py-pybigwig/patches/patch-libBigWig_bwValues.c | 2 ++
 3 files changed, 5 insertions(+), 2 deletions(-)

diffs:
diff --git a/py-pybigwig/Makefile b/py-pybigwig/Makefile
index 33eadecd1a..4321f485a4 100644
--- a/py-pybigwig/Makefile
+++ b/py-pybigwig/Makefile
@@ -17,5 +17,6 @@ LICENSE=	mit
 
 .include "../../lang/python/egg.mk"
 .include "../../www/curl/buildlink3.mk"
-.include "../../lang/python/application.mk"
+.include "../../math/py-numpy/buildlink3.mk"
+#.include "../../lang/python/application.mk"
 .include "../../mk/bsd.pkg.mk"
diff --git a/py-pybigwig/distinfo b/py-pybigwig/distinfo
index f67c6f3847..a96b015c09 100644
--- a/py-pybigwig/distinfo
+++ b/py-pybigwig/distinfo
@@ -3,4 +3,4 @@ $NetBSD$
 BLAKE2s (pyBigWig-0.3.22.tar.gz) = 05ef15d553161285b2268b7d84774797276740c79772c559dea82c3d20e81e03
 SHA512 (pyBigWig-0.3.22.tar.gz) = e1974f43a0cb1f7f1f010e130971ca3c1ec6882071a2617002ee6ec441820daf3c1f5ef930f9cc3662bd320279a50e04765c0bf8ee040eb0e7c857f966c86c40
 Size (pyBigWig-0.3.22.tar.gz) = 73864 bytes
-SHA1 (patch-libBigWig_bwValues.c) = a180ebf1e84dea7074b79318b4f1ce445df376d5
+SHA1 (patch-libBigWig_bwValues.c) = 216acd080e40acb75ba88cfaa019651f67ff1003
diff --git a/py-pybigwig/patches/patch-libBigWig_bwValues.c b/py-pybigwig/patches/patch-libBigWig_bwValues.c
index 9407479f87..ce2cdd434f 100644
--- a/py-pybigwig/patches/patch-libBigWig_bwValues.c
+++ b/py-pybigwig/patches/patch-libBigWig_bwValues.c
@@ -1,5 +1,7 @@
 $NetBSD$
 
+# Resolve conflict with macro in standard headers on FreeBSD
+
 --- libBigWig/bwValues.c.orig	2023-12-16 13:51:54 UTC
 +++ libBigWig/bwValues.c
 @@ -5,7 +5,7 @@