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py-scikit-learn: try fixing build on NetBSD
Module Name: pkgsrc-wip
Committed By: Thomas Klausner <wiz%gatalith.at@localhost>
Pushed By: wiz
Date: Sun Nov 12 20:51:46 2023 +0100
Changeset: 782bc733504b7f8c6a0fc05a3582f815e9d0d961
Added Files:
py-scikit-learn/DESCR
py-scikit-learn/Makefile
py-scikit-learn/PLIST
py-scikit-learn/distinfo
py-scikit-learn/patches/patch-sklearn_preprocessing___target__encoder__fast.pyx
py-scikit-learn/patches/patch-sklearn_tree___tree.pyx
Log Message:
py-scikit-learn: try fixing build on NetBSD
Needs a newer py-cython, then it might work.
To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=782bc733504b7f8c6a0fc05a3582f815e9d0d961
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
diffstat:
py-scikit-learn/DESCR | 6 +
py-scikit-learn/Makefile | 28 +
py-scikit-learn/PLIST | 1856 ++++++++++++++++++++
py-scikit-learn/distinfo | 7 +
...learn_preprocessing___target__encoder__fast.pyx | 12 +
.../patches/patch-sklearn_tree___tree.pyx | 15 +
6 files changed, 1924 insertions(+)
diffs:
diff --git a/py-scikit-learn/DESCR b/py-scikit-learn/DESCR
new file mode 100644
index 0000000000..887f31351a
--- /dev/null
+++ b/py-scikit-learn/DESCR
@@ -0,0 +1,6 @@
+scikit-learn is a Python module integrating classic machine learning
+algorithms in the tightly-knit scientific Python world (numpy, scipy,
+matplotlib). It aims to provide simple and efficient solutions to
+learning problems, accessible to everybody and reusable in various
+contexts: machine-learning as a versatile tool for science and
+engineering.
diff --git a/py-scikit-learn/Makefile b/py-scikit-learn/Makefile
new file mode 100644
index 0000000000..3dab455610
--- /dev/null
+++ b/py-scikit-learn/Makefile
@@ -0,0 +1,28 @@
+# $NetBSD: Makefile,v 1.25 2023/11/06 08:40:01 wiz Exp $
+
+DISTNAME= scikit-learn-1.3.2
+PKGNAME= ${PYPKGPREFIX}-${DISTNAME}
+CATEGORIES= math python
+MASTER_SITES= ${MASTER_SITE_PYPI:=s/scikit-learn/}
+
+MAINTAINER= pkgsrc-users%NetBSD.org@localhost
+HOMEPAGE= https://scikit-learn.org/
+COMMENT= Machine learning algorithms for Python
+LICENSE= modified-bsd
+
+TOOL_DEPENDS+= ${PYPKGPREFIX}-setuptools-[0-9]*:../../devel/py-setuptools
+TOOL_DEPENDS+= ${PYPKGPREFIX}-wheel-[0-9]*:../../devel/py-wheel
+DEPENDS+= ${PYPKGPREFIX}-joblib>=1.1.1:../../devel/py-joblib
+DEPENDS+= ${PYPKGPREFIX}-scipy>=1.5.0:../../math/py-scipy
+DEPENDS+= ${PYPKGPREFIX}-threadpoolctl>=2.0.0:../../parallel/py-threadpoolctl
+TEST_DEPENDS+= ${PYPKGPREFIX}-test-cov>=2.9.0:../../devel/py-test-cov
+
+USE_LANGUAGES= c c++ fortran
+
+PYTHON_VERSIONS_INCOMPATIBLE= 27 38
+
+.include "../../devel/py-cython/buildlink3.mk"
+.include "../../lang/python/wheel.mk"
+BUILDLINK_API_DEPENDS.py-numpy+= ${PYPKGPREFIX}-numpy>=1.17.3
+.include "../../math/py-numpy/buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"
diff --git a/py-scikit-learn/PLIST b/py-scikit-learn/PLIST
new file mode 100644
index 0000000000..d9a75297db
--- /dev/null
+++ b/py-scikit-learn/PLIST
@@ -0,0 +1,1856 @@
+@comment $NetBSD: PLIST,v 1.9 2023/11/01 18:39:36 adam Exp $
+${PYSITELIB}/${WHEEL_INFODIR}/COPYING
+${PYSITELIB}/${WHEEL_INFODIR}/METADATA
+${PYSITELIB}/${WHEEL_INFODIR}/RECORD
+${PYSITELIB}/${WHEEL_INFODIR}/WHEEL
+${PYSITELIB}/${WHEEL_INFODIR}/top_level.txt
+${PYSITELIB}/sklearn/__check_build/__init__.py
+${PYSITELIB}/sklearn/__check_build/__init__.pyc
+${PYSITELIB}/sklearn/__check_build/__init__.pyo
+${PYSITELIB}/sklearn/__check_build/_check_build.so
+${PYSITELIB}/sklearn/__init__.py
+${PYSITELIB}/sklearn/__init__.pyc
+${PYSITELIB}/sklearn/__init__.pyo
+${PYSITELIB}/sklearn/_build_utils/__init__.py
+${PYSITELIB}/sklearn/_build_utils/__init__.pyc
+${PYSITELIB}/sklearn/_build_utils/__init__.pyo
+${PYSITELIB}/sklearn/_build_utils/openmp_helpers.py
+${PYSITELIB}/sklearn/_build_utils/openmp_helpers.pyc
+${PYSITELIB}/sklearn/_build_utils/openmp_helpers.pyo
+${PYSITELIB}/sklearn/_build_utils/pre_build_helpers.py
+${PYSITELIB}/sklearn/_build_utils/pre_build_helpers.pyc
+${PYSITELIB}/sklearn/_build_utils/pre_build_helpers.pyo
+${PYSITELIB}/sklearn/_config.py
+${PYSITELIB}/sklearn/_config.pyc
+${PYSITELIB}/sklearn/_config.pyo
+${PYSITELIB}/sklearn/_distributor_init.py
+${PYSITELIB}/sklearn/_distributor_init.pyc
+${PYSITELIB}/sklearn/_distributor_init.pyo
+${PYSITELIB}/sklearn/_isotonic.so
+${PYSITELIB}/sklearn/_loss/__init__.py
+${PYSITELIB}/sklearn/_loss/__init__.pyc
+${PYSITELIB}/sklearn/_loss/__init__.pyo
+${PYSITELIB}/sklearn/_loss/_loss.pxd
+${PYSITELIB}/sklearn/_loss/_loss.so
+${PYSITELIB}/sklearn/_loss/link.py
+${PYSITELIB}/sklearn/_loss/link.pyc
+${PYSITELIB}/sklearn/_loss/link.pyo
+${PYSITELIB}/sklearn/_loss/loss.py
+${PYSITELIB}/sklearn/_loss/loss.pyc
+${PYSITELIB}/sklearn/_loss/loss.pyo
+${PYSITELIB}/sklearn/_loss/tests/__init__.py
+${PYSITELIB}/sklearn/_loss/tests/__init__.pyc
+${PYSITELIB}/sklearn/_loss/tests/__init__.pyo
+${PYSITELIB}/sklearn/_loss/tests/test_link.py
+${PYSITELIB}/sklearn/_loss/tests/test_link.pyc
+${PYSITELIB}/sklearn/_loss/tests/test_link.pyo
+${PYSITELIB}/sklearn/_loss/tests/test_loss.py
+${PYSITELIB}/sklearn/_loss/tests/test_loss.pyc
+${PYSITELIB}/sklearn/_loss/tests/test_loss.pyo
+${PYSITELIB}/sklearn/_min_dependencies.py
+${PYSITELIB}/sklearn/_min_dependencies.pyc
+${PYSITELIB}/sklearn/_min_dependencies.pyo
+${PYSITELIB}/sklearn/base.py
+${PYSITELIB}/sklearn/base.pyc
+${PYSITELIB}/sklearn/base.pyo
+${PYSITELIB}/sklearn/calibration.py
+${PYSITELIB}/sklearn/calibration.pyc
+${PYSITELIB}/sklearn/calibration.pyo
+${PYSITELIB}/sklearn/cluster/__init__.py
+${PYSITELIB}/sklearn/cluster/__init__.pyc
+${PYSITELIB}/sklearn/cluster/__init__.pyo
+${PYSITELIB}/sklearn/cluster/_affinity_propagation.py
+${PYSITELIB}/sklearn/cluster/_affinity_propagation.pyc
+${PYSITELIB}/sklearn/cluster/_affinity_propagation.pyo
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+${PYSITELIB}/sklearn/cluster/_bisect_k_means.pyo
+${PYSITELIB}/sklearn/cluster/_dbscan.py
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+${PYSITELIB}/sklearn/cluster/_hdbscan/__init__.pyo
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diff --git a/py-scikit-learn/distinfo b/py-scikit-learn/distinfo
new file mode 100644
index 0000000000..93228fa63f
--- /dev/null
+++ b/py-scikit-learn/distinfo
@@ -0,0 +1,7 @@
+$NetBSD: distinfo,v 1.13 2023/11/01 18:39:36 adam Exp $
+
+BLAKE2s (scikit-learn-1.3.2.tar.gz) = 339358d6ca41af1812ecc1c3d7f7c6e79e533783b6d7c04a8fcd824f8f61a9f2
+SHA512 (scikit-learn-1.3.2.tar.gz) = fa48267c3e1784c52a72c40bb0bc6e39fcd9b7d9a80b889d0fa02153c6473a79fe4e51266d56b504bf01179d8a5af4216b29d9008a532afbe133e7eac79cd336
+Size (scikit-learn-1.3.2.tar.gz) = 7510251 bytes
+SHA1 (patch-sklearn_preprocessing___target__encoder__fast.pyx) = 72232f3a7f2d519652a2559185aab90866a3882f
+SHA1 (patch-sklearn_tree___tree.pyx) = 447d0e470bae1ab152bee1d922fa369c990adaa7
diff --git a/py-scikit-learn/patches/patch-sklearn_preprocessing___target__encoder__fast.pyx b/py-scikit-learn/patches/patch-sklearn_preprocessing___target__encoder__fast.pyx
new file mode 100644
index 0000000000..d0c0290cda
--- /dev/null
+++ b/py-scikit-learn/patches/patch-sklearn_preprocessing___target__encoder__fast.pyx
@@ -0,0 +1,12 @@
+$NetBSD$
+
+Fix build on NetBSD.
+
+--- sklearn/preprocessing/_target_encoder_fast.pyx.orig 2023-10-23 10:11:35.000000000 +0000
++++ sklearn/preprocessing/_target_encoder_fast.pyx
+@@ -1,4 +1,4 @@
+-from libc.math cimport isnan
++from libcpp.cmath cimport isnan as isnan
+ from libcpp.vector cimport vector
+
+ cimport numpy as cnp
diff --git a/py-scikit-learn/patches/patch-sklearn_tree___tree.pyx b/py-scikit-learn/patches/patch-sklearn_tree___tree.pyx
new file mode 100644
index 0000000000..2761d817c0
--- /dev/null
+++ b/py-scikit-learn/patches/patch-sklearn_tree___tree.pyx
@@ -0,0 +1,15 @@
+$NetBSD$
+
+Fix build on NetBSD.
+
+--- sklearn/tree/_tree.pyx.orig 2023-10-23 10:11:35.000000000 +0000
++++ sklearn/tree/_tree.pyx
+@@ -18,7 +18,7 @@ from libc.stdlib cimport free
+ from libc.string cimport memcpy
+ from libc.string cimport memset
+ from libc.stdint cimport INTPTR_MAX
+-from libc.math cimport isnan
++from libcpp.cmath cimport isnan as isnan
+ from libcpp.vector cimport vector
+ from libcpp.algorithm cimport pop_heap
+ from libcpp.algorithm cimport push_heap
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