fastx-toolkit: Unbreak build on Darwin

[Jason Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Mon Sep 25 12:58:01 2023 -0500
Changeset:	813ff11ce6a38d497067bdb6f67cfe62a5f7474c

Modified Files:
	fastx-toolkit/Makefile
	fastx-toolkit/PLIST
	fastx-toolkit/distinfo
	fastx-toolkit/patches/patch-m4_Makefile.am
	fastx-toolkit/patches/patch-src_fasta__formatter_fasta__formatter.cpp
	fastx-toolkit/patches/patch-src_libfastx_fastx.h
Added Files:
	fastx-toolkit/patches/patch-configure.ac

Log Message:
fastx-toolkit: Unbreak build on Darwin

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=813ff11ce6a38d497067bdb6f67cfe62a5f7474c

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 fastx-toolkit/Makefile                                    |  5 +++--
 fastx-toolkit/PLIST                                       |  2 +-
 fastx-toolkit/distinfo                                    |  3 ++-
 fastx-toolkit/patches/patch-configure.ac                  | 15 +++++++++++++++
 fastx-toolkit/patches/patch-m4_Makefile.am                |  2 +-
 .../patch-src_fasta__formatter_fasta__formatter.cpp       |  2 +-
 fastx-toolkit/patches/patch-src_libfastx_fastx.h          |  2 +-
 7 files changed, 24 insertions(+), 7 deletions(-)

diffs:
diff --git a/fastx-toolkit/Makefile b/fastx-toolkit/Makefile
index b45d309593..f9d82a78ae 100644
--- a/fastx-toolkit/Makefile
+++ b/fastx-toolkit/Makefile
@@ -1,6 +1,7 @@
-# $NetBSD$
+# $NetBSD: Makefile,v 1.2 2022/06/28 11:31:00 wiz Exp $
 
 DISTNAME=	fastx-toolkit-0.0.14.6
+PKGREVISION=	1
 CATEGORIES=	biology
 MASTER_SITES=	${MASTER_SITE_GITHUB:=agordon/}
 GITHUB_PROJECT=	fastx_toolkit
@@ -23,5 +24,5 @@ REPLACE_BASH+=	scripts/fastx_nucleotide_distribution_line_graph.sh
 pre-configure:
 	${RUN} cd ${WRKSRC} && autoreconf -vif
 
-.include "../../wip/libgtextutils/buildlink3.mk"
+.include "../../devel/libgtextutils/buildlink3.mk"
 .include "../../mk/bsd.pkg.mk"
diff --git a/fastx-toolkit/PLIST b/fastx-toolkit/PLIST
index 281d34a22b..04e3aedde2 100644
--- a/fastx-toolkit/PLIST
+++ b/fastx-toolkit/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD$
+@comment $NetBSD: PLIST,v 1.1 2022/04/05 18:48:57 bacon Exp $
 bin/fasta_clipping_histogram.pl
 bin/fasta_formatter
 bin/fasta_nucleotide_changer
diff --git a/fastx-toolkit/distinfo b/fastx-toolkit/distinfo
index aae228fe52..975fd38e34 100644
--- a/fastx-toolkit/distinfo
+++ b/fastx-toolkit/distinfo
@@ -1,8 +1,9 @@
-$NetBSD$
+$NetBSD: distinfo,v 1.1 2022/04/05 18:48:57 bacon Exp $
 
 BLAKE2s (fastx-toolkit-0.0.14.6-ea0ca83ba24dce80c20ca589b838a281fe5deb0c.tar.gz) = 973b56d722a2796aa28a04de56ef9273ce5a99fae5cf40bdbf9ef796acb2b6ef
 SHA512 (fastx-toolkit-0.0.14.6-ea0ca83ba24dce80c20ca589b838a281fe5deb0c.tar.gz) = bb9cc9685a37e0a88b5110ad48856d4160dc1a29e6b76f8cdf78baf12a9cea97c35f711b1aef270bba5d44b42c8e6bcc31ef9eae239de785fe1bd38cd4994d3e
 Size (fastx-toolkit-0.0.14.6-ea0ca83ba24dce80c20ca589b838a281fe5deb0c.tar.gz) = 259875 bytes
+SHA1 (patch-configure.ac) = 3904fa9c2d399b8973a3d8f29696e4404ce15d3e
 SHA1 (patch-m4_Makefile.am) = f8cb138860f0a3708a6690ea6cd33302b35bce76
 SHA1 (patch-src_fasta__formatter_fasta__formatter.cpp) = 5fc622320186c5415cbcc4ae97cfc24f68983949
 SHA1 (patch-src_libfastx_fastx.h) = 5a387ac575a5269bc03e3f09ab752889efb8870c
diff --git a/fastx-toolkit/patches/patch-configure.ac b/fastx-toolkit/patches/patch-configure.ac
new file mode 100644
index 0000000000..2e344e2e66
--- /dev/null
+++ b/fastx-toolkit/patches/patch-configure.ac
@@ -0,0 +1,15 @@
+$NetBSD$
+
+# Prevent build failures over minor warnings
+
+--- configure.ac.orig	2023-09-25 17:54:20.467556701 +0000
++++ configure.ac
+@@ -31,7 +31,7 @@ dnl fi
+ PKG_CHECK_MODULES([GTEXTUTILS],[gtextutils])
+ 
+ dnl --enable-wall
+-EXTRA_CHECKS="-Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror"
++EXTRA_CHECKS="-Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal"
+ AC_ARG_ENABLE(wall,
+ [  --enable-wall          Enable many common GCC warnings (-Wall,-Wextra, -Werror etc., default enabled)],
+ [case "${enableval}" in
diff --git a/fastx-toolkit/patches/patch-m4_Makefile.am b/fastx-toolkit/patches/patch-m4_Makefile.am
index 9408d77ff9..e85265c188 100644
--- a/fastx-toolkit/patches/patch-m4_Makefile.am
+++ b/fastx-toolkit/patches/patch-m4_Makefile.am
@@ -1,4 +1,4 @@
-$NetBSD$
+$NetBSD: patch-m4_Makefile.am,v 1.1 2022/04/05 18:48:57 bacon Exp $
 
 Do not install unrelated m4 files.
 
diff --git a/fastx-toolkit/patches/patch-src_fasta__formatter_fasta__formatter.cpp b/fastx-toolkit/patches/patch-src_fasta__formatter_fasta__formatter.cpp
index 87adc35ecd..e2a5756115 100644
--- a/fastx-toolkit/patches/patch-src_fasta__formatter_fasta__formatter.cpp
+++ b/fastx-toolkit/patches/patch-src_fasta__formatter_fasta__formatter.cpp
@@ -1,4 +1,4 @@
-$NetBSD$
+$NetBSD: patch-src_fasta__formatter_fasta__formatter.cpp,v 1.1 2022/04/05 18:48:57 bacon Exp $
 
 # Silence compile error
 
diff --git a/fastx-toolkit/patches/patch-src_libfastx_fastx.h b/fastx-toolkit/patches/patch-src_libfastx_fastx.h
index 12a988432e..0a25126f42 100644
--- a/fastx-toolkit/patches/patch-src_libfastx_fastx.h
+++ b/fastx-toolkit/patches/patch-src_libfastx_fastx.h
@@ -1,4 +1,4 @@
-$NetBSD$
+$NetBSD: patch-src_libfastx_fastx.h,v 1.1 2022/04/05 18:48:57 bacon Exp $
 
 # Limit packing to this one structure to avoid compatibility issues