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py-biskit: remove
Module Name: pkgsrc-wip
Committed By: Thomas Klausner <tk%giga.or.at@localhost>
Pushed By: wiz
Date: Tue Jan 25 02:34:55 2022 +0100
Changeset: 269ee4413882b74221b1d376951f3961d489e2e7
Modified Files:
Makefile
Removed Files:
py-biskit/DESCR
py-biskit/Makefile
py-biskit/PLIST
py-biskit/distinfo
py-biskit/patches/patch-aa
Log Message:
py-biskit: remove
used py-biggles which didn't build and was removed
To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=269ee4413882b74221b1d376951f3961d489e2e7
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
diffstat:
Makefile | 1 -
py-biskit/DESCR | 7 -
py-biskit/Makefile | 34 --
py-biskit/PLIST | 777 ---------------------------------------------
py-biskit/distinfo | 6 -
py-biskit/patches/patch-aa | 13 -
6 files changed, 838 deletions(-)
diffs:
diff --git a/Makefile b/Makefile
index 37625ac7ba..c790fc1b47 100644
--- a/Makefile
+++ b/Makefile
@@ -3458,7 +3458,6 @@ SUBDIR+= py-bigfloat
SUBDIR+= py-biofrills
SUBDIR+= py-biopython
SUBDIR+= py-bip
-SUBDIR+= py-biskit
SUBDIR+= py-bitsets
SUBDIR+= py-blake2
SUBDIR+= py-blaze
diff --git a/py-biskit/DESCR b/py-biskit/DESCR
deleted file mode 100644
index bca41246fb..0000000000
--- a/py-biskit/DESCR
+++ /dev/null
@@ -1,7 +0,0 @@
-Biskit is a modular, object-oriented Python library for
-structural bioinformatics research. It facilitates the manipulation
-and analysis of macromolecular structures, protein complexes, and molecular
-dynamics trajectories. For efficient number crunching, Biskit objects tightly
-integrate with numpy. Biskit also offers a platform for the rapid integration of
-external programs and new algorithms into complex workflows
-Calculations are thus often delegated to establisheds
diff --git a/py-biskit/Makefile b/py-biskit/Makefile
deleted file mode 100644
index e7ec2ee045..0000000000
--- a/py-biskit/Makefile
+++ /dev/null
@@ -1,34 +0,0 @@
-# $NetBSD: Makefile,v 1.6 2014/05/09 07:38:45 thomasklausner Exp $
-
-DISTNAME= biskit-2.3.1
-PKGNAME= ${PYPKGPREFIX}-${DISTNAME}
-PKGREVISION= 1
-CATEGORIES= biology python
-MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=biskit/}
-
-MAINTAINER= jihbed.research%gmail.com@localhost
-HOMEPAGE= https://biskit.pasteur.fr/
-COMMENT= Python platform for structural bioinformatics
-LICENSE= gnu-gpl-v2
-
-DEPENDS+= ${PYPKGPREFIX}-biggles>=1.6.3:../../graphics/py-biggles
-DEPENDS+= ${PYPKGPREFIX}-Scientific>=2.8:../../math/py-Scientific
-DEPENDS+= ${PYPKGPREFIX}-rlcompleter2>=0.96:../../wip/py-rlcompleter2
-DEPENDS+= ${PYPKGPREFIX}-readline>=0nb2:../../devel/py-readline
-
-USE_TOOLS+= perl
-USE_LANGUAGES= # none
-
-REPLACE_PERL+= Biskit/data/spectrum.pl
-REPLACE_PYTHON+= scripts/Biskit/bis2.6 Biskit/data/pdb/remediator_python.1.56.080328.py
-
-PYTHON_VERSIONS_ACCEPTED= 27 # py-Numeric
-
-post-extract:
- ${MV} ${WRKSRC}/scripts/Biskit/bis.py ${WRKSRC}/scripts/Biskit/bis${PYVERSSUFFIX}
-
-.include "../../lang/python/application.mk"
-.include "../../wip/python/distutils.mk"
-.include "../../math/py-Numeric/buildlink3.mk"
-.include "../../math/py-numpy/buildlink3.mk"
-.include "../../mk/bsd.pkg.mk"
diff --git a/py-biskit/PLIST b/py-biskit/PLIST
deleted file mode 100644
index ad96187c79..0000000000
--- a/py-biskit/PLIST
+++ /dev/null
@@ -1,777 +0,0 @@
-@comment $NetBSD$
-bin/bis${PYVERSSUFFIX}
-${PYSITELIB}/Biskit/AmberCrdEntropist.py
-${PYSITELIB}/Biskit/AmberCrdEntropist.pyc
-${PYSITELIB}/Biskit/AmberCrdEntropist.pyo
-${PYSITELIB}/Biskit/AmberCrdParser.py
-${PYSITELIB}/Biskit/AmberCrdParser.pyc
-${PYSITELIB}/Biskit/AmberCrdParser.pyo
-${PYSITELIB}/Biskit/AmberEntropist.py
-${PYSITELIB}/Biskit/AmberEntropist.pyc
-${PYSITELIB}/Biskit/AmberEntropist.pyo
-${PYSITELIB}/Biskit/AmberEntropyMaster.py
-${PYSITELIB}/Biskit/AmberEntropyMaster.pyc
-${PYSITELIB}/Biskit/AmberEntropyMaster.pyo
-${PYSITELIB}/Biskit/AmberEntropySlave.py
-${PYSITELIB}/Biskit/AmberEntropySlave.pyc
-${PYSITELIB}/Biskit/AmberEntropySlave.pyo
-${PYSITELIB}/Biskit/AmberLeap.py
-${PYSITELIB}/Biskit/AmberLeap.pyc
-${PYSITELIB}/Biskit/AmberLeap.pyo
-${PYSITELIB}/Biskit/AmberParmBuilder.py
-${PYSITELIB}/Biskit/AmberParmBuilder.pyc
-${PYSITELIB}/Biskit/AmberParmBuilder.pyo
-${PYSITELIB}/Biskit/AmberRstParser.py
-${PYSITELIB}/Biskit/AmberRstParser.pyc
-${PYSITELIB}/Biskit/AmberRstParser.pyo
-${PYSITELIB}/Biskit/BisList.py
-${PYSITELIB}/Biskit/BisList.pyc
-${PYSITELIB}/Biskit/BisList.pyo
-${PYSITELIB}/Biskit/Blast2Seq.py
-${PYSITELIB}/Biskit/Blast2Seq.pyc
-${PYSITELIB}/Biskit/Blast2Seq.pyo
-${PYSITELIB}/Biskit/ChainCleaner.py
-${PYSITELIB}/Biskit/ChainCleaner.pyc
-${PYSITELIB}/Biskit/ChainCleaner.pyo
-${PYSITELIB}/Biskit/ChainSeparator.py
-${PYSITELIB}/Biskit/ChainSeparator.pyc
-${PYSITELIB}/Biskit/ChainSeparator.pyo
-${PYSITELIB}/Biskit/ChainWriter.py
-${PYSITELIB}/Biskit/ChainWriter.pyc
-${PYSITELIB}/Biskit/ChainWriter.pyo
-${PYSITELIB}/Biskit/ColorSpectrum.py
-${PYSITELIB}/Biskit/ColorSpectrum.pyc
-${PYSITELIB}/Biskit/ColorSpectrum.pyo
-${PYSITELIB}/Biskit/CommandLine.py
-${PYSITELIB}/Biskit/CommandLine.pyc
-${PYSITELIB}/Biskit/CommandLine.pyo
-${PYSITELIB}/Biskit/DSSP.py
-${PYSITELIB}/Biskit/DSSP.pyc
-${PYSITELIB}/Biskit/DSSP.pyo
-${PYSITELIB}/Biskit/DictList.py
-${PYSITELIB}/Biskit/DictList.pyc
-${PYSITELIB}/Biskit/DictList.pyo
-${PYSITELIB}/Biskit/Dock/Analyzer.py
-${PYSITELIB}/Biskit/Dock/Analyzer.pyc
-${PYSITELIB}/Biskit/Dock/Analyzer.pyo
-${PYSITELIB}/Biskit/Dock/Complex.py
-${PYSITELIB}/Biskit/Dock/Complex.pyc
-${PYSITELIB}/Biskit/Dock/Complex.pyo
-${PYSITELIB}/Biskit/Dock/ComplexEvolving.py
-${PYSITELIB}/Biskit/Dock/ComplexEvolving.pyc
-${PYSITELIB}/Biskit/Dock/ComplexEvolving.pyo
-${PYSITELIB}/Biskit/Dock/ComplexEvolvingList.py
-${PYSITELIB}/Biskit/Dock/ComplexEvolvingList.pyc
-${PYSITELIB}/Biskit/Dock/ComplexEvolvingList.pyo
-${PYSITELIB}/Biskit/Dock/ComplexList.py
-${PYSITELIB}/Biskit/Dock/ComplexList.pyc
-${PYSITELIB}/Biskit/Dock/ComplexList.pyo
-${PYSITELIB}/Biskit/Dock/ComplexModelRegistry.py
-${PYSITELIB}/Biskit/Dock/ComplexModelRegistry.pyc
-${PYSITELIB}/Biskit/Dock/ComplexModelRegistry.pyo
-${PYSITELIB}/Biskit/Dock/ComplexRandomizer.py
-${PYSITELIB}/Biskit/Dock/ComplexRandomizer.pyc
-${PYSITELIB}/Biskit/Dock/ComplexRandomizer.pyo
-${PYSITELIB}/Biskit/Dock/ComplexTraj.py
-${PYSITELIB}/Biskit/Dock/ComplexTraj.pyc
-${PYSITELIB}/Biskit/Dock/ComplexTraj.pyo
-${PYSITELIB}/Biskit/Dock/ContactMaster.py
-${PYSITELIB}/Biskit/Dock/ContactMaster.pyc
-${PYSITELIB}/Biskit/Dock/ContactMaster.pyo
-${PYSITELIB}/Biskit/Dock/ContactSlave.py
-${PYSITELIB}/Biskit/Dock/ContactSlave.pyc
-${PYSITELIB}/Biskit/Dock/ContactSlave.pyo
-${PYSITELIB}/Biskit/Dock/Docker.py
-${PYSITELIB}/Biskit/Dock/Docker.pyc
-${PYSITELIB}/Biskit/Dock/Docker.pyo
-${PYSITELIB}/Biskit/Dock/FixedList.py
-${PYSITELIB}/Biskit/Dock/FixedList.pyc
-${PYSITELIB}/Biskit/Dock/FixedList.pyo
-${PYSITELIB}/Biskit/Dock/HexParser.py
-${PYSITELIB}/Biskit/Dock/HexParser.pyc
-${PYSITELIB}/Biskit/Dock/HexParser.pyo
-${PYSITELIB}/Biskit/Dock/Intervor.py
-${PYSITELIB}/Biskit/Dock/Intervor.pyc
-${PYSITELIB}/Biskit/Dock/Intervor.pyo
-${PYSITELIB}/Biskit/Dock/PatchGenerator.py
-${PYSITELIB}/Biskit/Dock/PatchGenerator.pyc
-${PYSITELIB}/Biskit/Dock/PatchGenerator.pyo
-${PYSITELIB}/Biskit/Dock/PatchGeneratorFromOrbit.py
-${PYSITELIB}/Biskit/Dock/PatchGeneratorFromOrbit.pyc
-${PYSITELIB}/Biskit/Dock/PatchGeneratorFromOrbit.pyo
-${PYSITELIB}/Biskit/Dock/XRefineComplex.py
-${PYSITELIB}/Biskit/Dock/XRefineComplex.pyc
-${PYSITELIB}/Biskit/Dock/XRefineComplex.pyo
-${PYSITELIB}/Biskit/Dock/__init__.py
-${PYSITELIB}/Biskit/Dock/__init__.pyc
-${PYSITELIB}/Biskit/Dock/__init__.pyo
-${PYSITELIB}/Biskit/Dock/hexTools.py
-${PYSITELIB}/Biskit/Dock/hexTools.pyc
-${PYSITELIB}/Biskit/Dock/hexTools.pyo
-${PYSITELIB}/Biskit/Dock/settings.py
-${PYSITELIB}/Biskit/Dock/settings.pyc
-${PYSITELIB}/Biskit/Dock/settings.pyo
-${PYSITELIB}/Biskit/EDParser.py
-${PYSITELIB}/Biskit/EDParser.pyc
-${PYSITELIB}/Biskit/EDParser.pyo
-${PYSITELIB}/Biskit/EnsembleTraj.py
-${PYSITELIB}/Biskit/EnsembleTraj.pyc
-${PYSITELIB}/Biskit/EnsembleTraj.pyo
-${PYSITELIB}/Biskit/ErrorHandler.py
-${PYSITELIB}/Biskit/ErrorHandler.pyc
-${PYSITELIB}/Biskit/ErrorHandler.pyo
-${PYSITELIB}/Biskit/Errors.py
-${PYSITELIB}/Biskit/Errors.pyc
-${PYSITELIB}/Biskit/Errors.pyo
-${PYSITELIB}/Biskit/ExeConfig.py
-${PYSITELIB}/Biskit/ExeConfig.pyc
-${PYSITELIB}/Biskit/ExeConfig.pyo
-${PYSITELIB}/Biskit/ExeConfigCache.py
-${PYSITELIB}/Biskit/ExeConfigCache.pyc
-${PYSITELIB}/Biskit/ExeConfigCache.pyo
-${PYSITELIB}/Biskit/Executor.py
-${PYSITELIB}/Biskit/Executor.pyc
-${PYSITELIB}/Biskit/Executor.pyo
-${PYSITELIB}/Biskit/Fold_X.py
-${PYSITELIB}/Biskit/Fold_X.pyc
-${PYSITELIB}/Biskit/Fold_X.pyo
-${PYSITELIB}/Biskit/FuzzyCluster.py
-${PYSITELIB}/Biskit/FuzzyCluster.pyc
-${PYSITELIB}/Biskit/FuzzyCluster.pyo
-${PYSITELIB}/Biskit/Hmmer.py
-${PYSITELIB}/Biskit/Hmmer.pyc
-${PYSITELIB}/Biskit/Hmmer.pyo
-${PYSITELIB}/Biskit/IcmCad.py
-${PYSITELIB}/Biskit/IcmCad.pyc
-${PYSITELIB}/Biskit/IcmCad.pyo
-${PYSITELIB}/Biskit/LocalPath.py
-${PYSITELIB}/Biskit/LocalPath.pyc
-${PYSITELIB}/Biskit/LocalPath.pyo
-${PYSITELIB}/Biskit/LogFile.py
-${PYSITELIB}/Biskit/LogFile.pyc
-${PYSITELIB}/Biskit/LogFile.pyo
-${PYSITELIB}/Biskit/MatrixPlot.py
-${PYSITELIB}/Biskit/MatrixPlot.pyc
-${PYSITELIB}/Biskit/MatrixPlot.pyo
-${PYSITELIB}/Biskit/Mod/Aligner.py
-${PYSITELIB}/Biskit/Mod/Aligner.pyc
-${PYSITELIB}/Biskit/Mod/Aligner.pyo
-${PYSITELIB}/Biskit/Mod/AlignerMaster.py
-${PYSITELIB}/Biskit/Mod/AlignerMaster.pyc
-${PYSITELIB}/Biskit/Mod/AlignerMaster.pyo
-${PYSITELIB}/Biskit/Mod/AlignerSlave.py
-${PYSITELIB}/Biskit/Mod/AlignerSlave.pyc
-${PYSITELIB}/Biskit/Mod/AlignerSlave.pyo
-${PYSITELIB}/Biskit/Mod/Analyse.py
-${PYSITELIB}/Biskit/Mod/Analyse.pyc
-${PYSITELIB}/Biskit/Mod/Analyse.pyo
-${PYSITELIB}/Biskit/Mod/Benchmark.py
-${PYSITELIB}/Biskit/Mod/Benchmark.pyc
-${PYSITELIB}/Biskit/Mod/Benchmark.pyo
-${PYSITELIB}/Biskit/Mod/CheckIdentities.py
-${PYSITELIB}/Biskit/Mod/CheckIdentities.pyc
-${PYSITELIB}/Biskit/Mod/CheckIdentities.pyo
-${PYSITELIB}/Biskit/Mod/ModelMaster.py
-${PYSITELIB}/Biskit/Mod/ModelMaster.pyc
-${PYSITELIB}/Biskit/Mod/ModelMaster.pyo
-${PYSITELIB}/Biskit/Mod/ModelSlave.py
-${PYSITELIB}/Biskit/Mod/ModelSlave.pyc
-${PYSITELIB}/Biskit/Mod/ModelSlave.pyo
-${PYSITELIB}/Biskit/Mod/Modeller.py
-${PYSITELIB}/Biskit/Mod/Modeller.pyc
-${PYSITELIB}/Biskit/Mod/Modeller.pyo
-${PYSITELIB}/Biskit/Mod/SequenceSearcher.py
-${PYSITELIB}/Biskit/Mod/SequenceSearcher.pyc
-${PYSITELIB}/Biskit/Mod/SequenceSearcher.pyo
-${PYSITELIB}/Biskit/Mod/TemplateCleaner.py
-${PYSITELIB}/Biskit/Mod/TemplateCleaner.pyc
-${PYSITELIB}/Biskit/Mod/TemplateCleaner.pyo
-${PYSITELIB}/Biskit/Mod/TemplateFilter.py
-${PYSITELIB}/Biskit/Mod/TemplateFilter.pyc
-${PYSITELIB}/Biskit/Mod/TemplateFilter.pyo
-${PYSITELIB}/Biskit/Mod/TemplateSearcher.py
-${PYSITELIB}/Biskit/Mod/TemplateSearcher.pyc
-${PYSITELIB}/Biskit/Mod/TemplateSearcher.pyo
-${PYSITELIB}/Biskit/Mod/ValidationSetup.py
-${PYSITELIB}/Biskit/Mod/ValidationSetup.pyc
-${PYSITELIB}/Biskit/Mod/ValidationSetup.pyo
-${PYSITELIB}/Biskit/Mod/__init__.py
-${PYSITELIB}/Biskit/Mod/__init__.pyc
-${PYSITELIB}/Biskit/Mod/__init__.pyo
-${PYSITELIB}/Biskit/Mod/modUtils.py
-${PYSITELIB}/Biskit/Mod/modUtils.pyc
-${PYSITELIB}/Biskit/Mod/modUtils.pyo
-${PYSITELIB}/Biskit/Mod/settings.py
-${PYSITELIB}/Biskit/Mod/settings.pyc
-${PYSITELIB}/Biskit/Mod/settings.pyo
-${PYSITELIB}/Biskit/Model.py
-${PYSITELIB}/Biskit/Model.pyc
-${PYSITELIB}/Biskit/Model.pyo
-${PYSITELIB}/Biskit/ModelList.py
-${PYSITELIB}/Biskit/ModelList.pyc
-${PYSITELIB}/Biskit/ModelList.pyo
-${PYSITELIB}/Biskit/PCRModel.py
-${PYSITELIB}/Biskit/PCRModel.pyc
-${PYSITELIB}/Biskit/PCRModel.pyo
-${PYSITELIB}/Biskit/PDBCleaner.py
-${PYSITELIB}/Biskit/PDBCleaner.pyc
-${PYSITELIB}/Biskit/PDBCleaner.pyo
-${PYSITELIB}/Biskit/PDBDope.py
-${PYSITELIB}/Biskit/PDBDope.pyc
-${PYSITELIB}/Biskit/PDBDope.pyo
-${PYSITELIB}/Biskit/PDBModel.py
-${PYSITELIB}/Biskit/PDBModel.pyc
-${PYSITELIB}/Biskit/PDBModel.pyo
-${PYSITELIB}/Biskit/PDBParseFile.py
-${PYSITELIB}/Biskit/PDBParseFile.pyc
-${PYSITELIB}/Biskit/PDBParseFile.pyo
-${PYSITELIB}/Biskit/PDBParseModel.py
-${PYSITELIB}/Biskit/PDBParseModel.pyc
-${PYSITELIB}/Biskit/PDBParseModel.pyo
-${PYSITELIB}/Biskit/PDBParseNCBI.py
-${PYSITELIB}/Biskit/PDBParseNCBI.pyc
-${PYSITELIB}/Biskit/PDBParseNCBI.pyo
-${PYSITELIB}/Biskit/PDBParsePickle.py
-${PYSITELIB}/Biskit/PDBParsePickle.pyc
-${PYSITELIB}/Biskit/PDBParsePickle.pyo
-${PYSITELIB}/Biskit/PDBParser.py
-${PYSITELIB}/Biskit/PDBParser.pyc
-${PYSITELIB}/Biskit/PDBParser.pyo
-${PYSITELIB}/Biskit/PDBParserFactory.py
-${PYSITELIB}/Biskit/PDBParserFactory.pyc
-${PYSITELIB}/Biskit/PDBParserFactory.pyo
-${PYSITELIB}/Biskit/PVM/ExampleMaster.py
-${PYSITELIB}/Biskit/PVM/ExampleMaster.pyc
-${PYSITELIB}/Biskit/PVM/ExampleMaster.pyo
-${PYSITELIB}/Biskit/PVM/ExampleSlave.py
-${PYSITELIB}/Biskit/PVM/ExampleSlave.pyc
-${PYSITELIB}/Biskit/PVM/ExampleSlave.pyo
-${PYSITELIB}/Biskit/PVM/PVMThread.py
-${PYSITELIB}/Biskit/PVM/PVMThread.pyc
-${PYSITELIB}/Biskit/PVM/PVMThread.pyo
-${PYSITELIB}/Biskit/PVM/Status.py
-${PYSITELIB}/Biskit/PVM/Status.pyc
-${PYSITELIB}/Biskit/PVM/Status.pyo
-${PYSITELIB}/Biskit/PVM/TrackingJobMaster.py
-${PYSITELIB}/Biskit/PVM/TrackingJobMaster.pyc
-${PYSITELIB}/Biskit/PVM/TrackingJobMaster.pyo
-${PYSITELIB}/Biskit/PVM/__init__.py
-${PYSITELIB}/Biskit/PVM/__init__.pyc
-${PYSITELIB}/Biskit/PVM/__init__.pyo
-${PYSITELIB}/Biskit/PVM/dispatcher.py
-${PYSITELIB}/Biskit/PVM/dispatcher.pyc
-${PYSITELIB}/Biskit/PVM/dispatcher.pyo
-${PYSITELIB}/Biskit/PVM/hosts.py
-${PYSITELIB}/Biskit/PVM/hosts.pyc
-${PYSITELIB}/Biskit/PVM/hosts.pyo
-${PYSITELIB}/Biskit/PVM/pvm.py
-${PYSITELIB}/Biskit/PVM/pvm.pyc
-${PYSITELIB}/Biskit/PVM/pvm.pyo
-${PYSITELIB}/Biskit/Polymer.py
-${PYSITELIB}/Biskit/Polymer.pyc
-${PYSITELIB}/Biskit/Polymer.pyo
-${PYSITELIB}/Biskit/ProfileCollection.py
-${PYSITELIB}/Biskit/ProfileCollection.pyc
-${PYSITELIB}/Biskit/ProfileCollection.pyo
-${PYSITELIB}/Biskit/ProfileMirror.py
-${PYSITELIB}/Biskit/ProfileMirror.pyc
-${PYSITELIB}/Biskit/ProfileMirror.pyo
-${PYSITELIB}/Biskit/Prosa.py
-${PYSITELIB}/Biskit/Prosa.pyc
-${PYSITELIB}/Biskit/Prosa.pyo
-${PYSITELIB}/Biskit/Prosa2003.py
-${PYSITELIB}/Biskit/Prosa2003.pyc
-${PYSITELIB}/Biskit/Prosa2003.pyo
-${PYSITELIB}/Biskit/Pymoler.py
-${PYSITELIB}/Biskit/Pymoler.pyc
-${PYSITELIB}/Biskit/Pymoler.pyo
-${PYSITELIB}/Biskit/QualMaster.py
-${PYSITELIB}/Biskit/QualMaster.pyc
-${PYSITELIB}/Biskit/QualMaster.pyo
-${PYSITELIB}/Biskit/QualSlave.py
-${PYSITELIB}/Biskit/QualSlave.pyc
-${PYSITELIB}/Biskit/QualSlave.pyo
-${PYSITELIB}/Biskit/Ramachandran.py
-${PYSITELIB}/Biskit/Ramachandran.pyc
-${PYSITELIB}/Biskit/Ramachandran.pyo
-${PYSITELIB}/Biskit/ReduceCoordinates.py
-${PYSITELIB}/Biskit/ReduceCoordinates.pyc
-${PYSITELIB}/Biskit/ReduceCoordinates.pyo
-${PYSITELIB}/Biskit/SettingsManager.py
-${PYSITELIB}/Biskit/SettingsManager.pyc
-${PYSITELIB}/Biskit/SettingsManager.pyo
-${PYSITELIB}/Biskit/SettingsParser.py
-${PYSITELIB}/Biskit/SettingsParser.pyc
-${PYSITELIB}/Biskit/SettingsParser.pyo
-${PYSITELIB}/Biskit/SparseArray.py
-${PYSITELIB}/Biskit/SparseArray.pyc
-${PYSITELIB}/Biskit/SparseArray.pyo
-${PYSITELIB}/Biskit/Statistics/Density.py
-${PYSITELIB}/Biskit/Statistics/Density.pyc
-${PYSITELIB}/Biskit/Statistics/Density.pyo
-${PYSITELIB}/Biskit/Statistics/ROCalyzer.py
-${PYSITELIB}/Biskit/Statistics/ROCalyzer.pyc
-${PYSITELIB}/Biskit/Statistics/ROCalyzer.pyo
-${PYSITELIB}/Biskit/Statistics/ROCalyzer_2.py
-${PYSITELIB}/Biskit/Statistics/ROCalyzer_2.pyc
-${PYSITELIB}/Biskit/Statistics/ROCalyzer_2.pyo
-${PYSITELIB}/Biskit/Statistics/__init__.py
-${PYSITELIB}/Biskit/Statistics/__init__.pyc
-${PYSITELIB}/Biskit/Statistics/__init__.pyo
-${PYSITELIB}/Biskit/Statistics/lognormal.py
-${PYSITELIB}/Biskit/Statistics/lognormal.pyc
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diff --git a/py-biskit/distinfo b/py-biskit/distinfo
deleted file mode 100644
index 90611117a2..0000000000
--- a/py-biskit/distinfo
+++ /dev/null
@@ -1,6 +0,0 @@
-$NetBSD: distinfo,v 1.1.1.1 2010/08/09 21:40:36 jihbed Exp $
-
-RMD160 (biskit-2.3.1.tar.gz) = d519e7d37622ad4b01de17d7e57054468dfdd859
-SHA512 (biskit-2.3.1.tar.gz) = 19d3d594a183a370ebdc3db9332599f0366cb9cd230828fdeea6eba39936ebd6cb94f41bea359fcbdbd59965cf38ec986a4eee672a039f469a7bff2bede52bcc
-Size (biskit-2.3.1.tar.gz) = 14165396 bytes
-SHA1 (patch-aa) = 447c8413870b7bc6c2f967205be57fe966eb008b
diff --git a/py-biskit/patches/patch-aa b/py-biskit/patches/patch-aa
deleted file mode 100644
index 3d3d5c85a8..0000000000
--- a/py-biskit/patches/patch-aa
+++ /dev/null
@@ -1,13 +0,0 @@
-$NetBSD: patch-aa,v 1.1.1.1 2010/08/09 21:40:36 jihbed Exp $
-
---- setup.py.orig 2009-05-17 15:44:31.000000000 +0000
-+++ setup.py 2010-08-05 14:39:25.000000000 +0000
-@@ -95,7 +95,7 @@
- requires=['numpy', 'ScientificPython', 'scipy', 'biopython' ],
- packages = packages,
- data_files = data_files,
-- scripts = ['scripts/Biskit/bis.py'],
-+ scripts = ['scripts/Biskit/bis'+sys.version[:3]],
-
- classifiers= ['License :: OSI Approved :: GNU General Public License (GPL)',
- 'Topic :: Scientific/Engineering :: Bio-Informatics',
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