biolibc: Update to 0.2.0.31

[Jason Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Wed Dec 8 10:55:02 2021 -0600
Changeset:	60a0025e11f96d233b6200877babb901d24fe3db

Modified Files:
	biolibc/Makefile
	biolibc/PLIST
	biolibc/buildlink3.mk
	biolibc/distinfo

Log Message:
biolibc: Update to 0.2.0.31

orf.c: Standardize function names
bed.c: Improve bed_skip_header()
Regenerate man pages
Fix test scripts

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=60a0025e11f96d233b6200877babb901d24fe3db

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 biolibc/Makefile      | 4 ++--
 biolibc/PLIST         | 6 +++---
 biolibc/buildlink3.mk | 2 +-
 biolibc/distinfo      | 6 +++---
 4 files changed, 9 insertions(+), 9 deletions(-)

diffs:
diff --git a/biolibc/Makefile b/biolibc/Makefile
index 41bff3fc1b..75c98fbe47 100644
--- a/biolibc/Makefile
+++ b/biolibc/Makefile
@@ -1,9 +1,9 @@
 # $NetBSD$
 
-DISTNAME=	biolibc-0.2.0.29
+DISTNAME=	biolibc-0.2.0.31
 CATEGORIES=	biology
 MASTER_SITES=	${MASTER_SITE_GITHUB:=auerlab/}
-GITHUB_TAG=	0af6d7d2dc489e69e1f77916bc44f32771623119
+GITHUB_TAG=	ee7e2b12628fce5500423c1b11e219a405ea6f9c
 
 MAINTAINER=	bacon%NetBSD.org@localhost
 HOMEPAGE=	https://github.com/auerlab/biolibc
diff --git a/biolibc/PLIST b/biolibc/PLIST
index 3fe21bf077..995ec47e24 100644
--- a/biolibc/PLIST
+++ b/biolibc/PLIST
@@ -437,6 +437,8 @@ man/man3/bl_gff_set_strand.3
 man/man3/bl_gff_skip_header.3
 man/man3/bl_gff_to_bed.3
 man/man3/bl_gff_write.3
+man/man3/bl_next_start_codon.3
+man/man3/bl_next_stop_codon.3
 man/man3/bl_overlap_print.3
 man/man3/bl_overlap_set_all.3
 man/man3/bl_overlap_set_feature1_len.3
@@ -556,8 +558,6 @@ man/man3/bl_vcf_set_sample_max.3
 man/man3/bl_vcf_set_single_sample.3
 man/man3/bl_vcf_set_single_sample_ae.3
 man/man3/bl_vcf_set_single_sample_cpy.3
-man/man3/bl_vcf_skip_header.3
+man/man3/bl_vcf_skip_meta_data.3
 man/man3/bl_vcf_write_ss_call.3
 man/man3/bl_vcf_write_static_fields.3
-man/man3/next_start_codon.3
-man/man3/next_stop_codon.3
diff --git a/biolibc/buildlink3.mk b/biolibc/buildlink3.mk
index ef1a0df992..f1871d411c 100644
--- a/biolibc/buildlink3.mk
+++ b/biolibc/buildlink3.mk
@@ -5,7 +5,7 @@ BUILDLINK_TREE+=	biolibc
 .if !defined(BIOLIBC_BUILDLINK3_MK)
 BIOLIBC_BUILDLINK3_MK:=
 
-BUILDLINK_API_DEPENDS.biolibc+=	biolibc>=0.2.0.29
+BUILDLINK_API_DEPENDS.biolibc+=	biolibc>=0.2.0.31
 BUILDLINK_PKGSRCDIR.biolibc?=	../../wip/biolibc
 .endif	# BIOLIBC_BUILDLINK3_MK
 
diff --git a/biolibc/distinfo b/biolibc/distinfo
index c2c1606f17..800c143a04 100644
--- a/biolibc/distinfo
+++ b/biolibc/distinfo
@@ -1,5 +1,5 @@
 $NetBSD$
 
-BLAKE2s (biolibc-0.2.0.29-0af6d7d2dc489e69e1f77916bc44f32771623119.tar.gz) = e86da538f2e9b65b68473a8487b85636a57c082f9744ea1c14ecd0293b439a5f
-SHA512 (biolibc-0.2.0.29-0af6d7d2dc489e69e1f77916bc44f32771623119.tar.gz) = 35387ce7a6cb55c892a544be23bd82006168ee826a9ae651a05fc386414a4fafa29c58bd715750d1ee2e06145f7dd0f18bbec7215e66ec0758c7d2693fe99c49
-Size (biolibc-0.2.0.29-0af6d7d2dc489e69e1f77916bc44f32771623119.tar.gz) = 122362 bytes
+BLAKE2s (biolibc-0.2.0.31-ee7e2b12628fce5500423c1b11e219a405ea6f9c.tar.gz) = 5e75ef1ca8c1711788f9f218e1e6e94e856e7058ad753ded7ef1940a01e84c1c
+SHA512 (biolibc-0.2.0.31-ee7e2b12628fce5500423c1b11e219a405ea6f9c.tar.gz) = 492eb9de4fc9e141ba0702ae72693daed5870eef4de69a3355369d351e3eb09bfc1e611f14933734f9c0eee2e14e85e75505ff6a0fa37e4e733e591d7de2ede7
+Size (biolibc-0.2.0.31-ee7e2b12628fce5500423c1b11e219a405ea6f9c.tar.gz) = 122347 bytes