biolibc: Update to 0.1.3.47

[Jason Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Sun Jul 18 18:11:19 2021 -0500
Changeset:	e18d92a9d92c0b4456c9c9f9e1efd0ff1350d4ad

Modified Files:
	biolibc/Makefile
	biolibc/PLIST
	biolibc/buildlink3.mk
	biolibc/distinfo

Log Message:
biolibc: Update to 0.1.3.47

Rename structure members to match published field names

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=e18d92a9d92c0b4456c9c9f9e1efd0ff1350d4ad

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 biolibc/Makefile      |  4 ++--
 biolibc/PLIST         | 52 +++++++++++++++++++++++----------------------------
 biolibc/buildlink3.mk |  2 +-
 biolibc/distinfo      |  8 ++++----
 4 files changed, 30 insertions(+), 36 deletions(-)

diffs:
diff --git a/biolibc/Makefile b/biolibc/Makefile
index 80847fdedd..71f14d3f85 100644
--- a/biolibc/Makefile
+++ b/biolibc/Makefile
@@ -1,9 +1,9 @@
 # $NetBSD$
 
-DISTNAME=	biolibc-0.1.3.45
+DISTNAME=	biolibc-0.1.3.47
 CATEGORIES=	biology
 MASTER_SITES=	${MASTER_SITE_GITHUB:=auerlab/}
-GITHUB_TAG=	f263d8fe16b3633d53e230c87ed402837b06ec7e
+GITHUB_TAG=	5243f0faea6540532c90dd027b702b5c630062e4
 
 MAINTAINER=	bacon%NetBSD.org@localhost
 HOMEPAGE=	https://github.com/auerlab/biolibc
diff --git a/biolibc/PLIST b/biolibc/PLIST
index 2539908ba8..35bc91ad44 100644
--- a/biolibc/PLIST
+++ b/biolibc/PLIST
@@ -15,54 +15,48 @@ lib/libbiolibc.so.2.0
 man/man3/BL_BED_BLOCK_COUNT.3
 man/man3/BL_BED_BLOCK_SIZES.3
 man/man3/BL_BED_BLOCK_STARTS.3
-man/man3/BL_BED_CHROMOSOME.3
-man/man3/BL_BED_END_POS.3
+man/man3/BL_BED_CHROM.3
+man/man3/BL_BED_CHROM_END.3
+man/man3/BL_BED_CHROM_START.3
 man/man3/BL_BED_FIELDS.3
+man/man3/BL_BED_ITEM_RGB.3
 man/man3/BL_BED_NAME.3
-man/man3/BL_BED_RGB_STR.3
 man/man3/BL_BED_SCORE.3
 man/man3/BL_BED_SET_BLOCK_COUNT.3
 man/man3/BL_BED_SET_BLOCK_SIZES.3
 man/man3/BL_BED_SET_BLOCK_STARTS.3
-man/man3/BL_BED_SET_CHROMOSOME.3
-man/man3/BL_BED_SET_END_POS.3
+man/man3/BL_BED_SET_CHROM.3
+man/man3/BL_BED_SET_CHROM_END.3
+man/man3/BL_BED_SET_CHROM_START.3
 man/man3/BL_BED_SET_FIELDS.3
+man/man3/BL_BED_SET_ITEM_RGB.3
 man/man3/BL_BED_SET_NAME.3
-man/man3/BL_BED_SET_RGB_STR.3
 man/man3/BL_BED_SET_SCORE.3
-man/man3/BL_BED_SET_START_POS.3
 man/man3/BL_BED_SET_STRAND.3
-man/man3/BL_BED_SET_THICK_END_POS.3
-man/man3/BL_BED_SET_THICK_START_POS.3
-man/man3/BL_BED_START_POS.3
+man/man3/BL_BED_SET_THICK_END.3
+man/man3/BL_BED_SET_THICK_START.3
 man/man3/BL_BED_STRAND.3
-man/man3/BL_BED_THICK_END_POS.3
-man/man3/BL_BED_THICK_START_POS.3
+man/man3/BL_BED_THICK_END.3
+man/man3/BL_BED_THICK_START.3
 man/man3/BL_GFF_ATTRIBUTES.3
-man/man3/BL_GFF_END_POS.3
+man/man3/BL_GFF_END.3
+man/man3/BL_GFF_FEATURE.3
 man/man3/BL_GFF_FEATURE_ID.3
-man/man3/BL_GFF_GANE_NAME.3
-man/man3/BL_GFF_GENE_NAME.3
-man/man3/BL_GFF_NAME.3
 man/man3/BL_GFF_PHASE.3
 man/man3/BL_GFF_SCORE.3
 man/man3/BL_GFF_SEQUENCE.3
 man/man3/BL_GFF_SET_ATTRIBUTES.3
-man/man3/BL_GFF_SET_END_POS.3
+man/man3/BL_GFF_SET_END.3
+man/man3/BL_GFF_SET_FEATURE.3
 man/man3/BL_GFF_SET_FEATURE_ID.3
-man/man3/BL_GFF_SET_GANE_NAME.3
-man/man3/BL_GFF_SET_GENE_NAME.3
-man/man3/BL_GFF_SET_NAME.3
 man/man3/BL_GFF_SET_PHASE.3
 man/man3/BL_GFF_SET_SCORE.3
 man/man3/BL_GFF_SET_SEQUENCE.3
 man/man3/BL_GFF_SET_SOURCE.3
-man/man3/BL_GFF_SET_START_POS,.3
-man/man3/BL_GFF_SET_START_POS.3
+man/man3/BL_GFF_SET_START.3
 man/man3/BL_GFF_SET_STRAND.3
 man/man3/BL_GFF_SOURCE.3
-man/man3/BL_GFF_START_POS,.3
-man/man3/BL_GFF_START_POS.3
+man/man3/BL_GFF_START.3
 man/man3/BL_GFF_STRAND.3
 man/man3/BL_OVERLAP_FEATURE1_LEN.3
 man/man3/BL_OVERLAP_FEATURE2_LEN.3
@@ -149,7 +143,7 @@ man/man3/BL_SAM_SET_TLEN.3
 man/man3/BL_SAM_TLEN.3
 man/man3/BL_VCF_ALT.3
 man/man3/BL_VCF_ALT_COUNT.3
-man/man3/BL_VCF_CHROMOSOME.3
+man/man3/BL_VCF_CHROM.3
 man/man3/BL_VCF_FILTER.3
 man/man3/BL_VCF_FORMAT.3
 man/man3/BL_VCF_FORMAT_MAX.3
@@ -163,13 +157,13 @@ man/man3/BL_VCF_PHREDS.3
 man/man3/BL_VCF_PHRED_BUFF_SIZE.3
 man/man3/BL_VCF_PHRED_COUNT.3
 man/man3/BL_VCF_POS.3
-man/man3/BL_VCF_QUALITY.3
+man/man3/BL_VCF_QUAL.3
 man/man3/BL_VCF_REF.3
 man/man3/BL_VCF_REF_COUNT.3
 man/man3/BL_VCF_SAMPLE_MAX.3
 man/man3/BL_VCF_SET_ALT.3
 man/man3/BL_VCF_SET_ALT_COUNT.3
-man/man3/BL_VCF_SET_CHROMOSOME.3
+man/man3/BL_VCF_SET_CHROM.3
 man/man3/BL_VCF_SET_FILTER.3
 man/man3/BL_VCF_SET_FORMAT.3
 man/man3/BL_VCF_SET_FORMAT_MAX.3
@@ -183,7 +177,7 @@ man/man3/BL_VCF_SET_PHREDS.3
 man/man3/BL_VCF_SET_PHRED_BUFF_SIZE.3
 man/man3/BL_VCF_SET_PHRED_COUNT.3
 man/man3/BL_VCF_SET_POS.3
-man/man3/BL_VCF_SET_QUALITY.3
+man/man3/BL_VCF_SET_QUAL.3
 man/man3/BL_VCF_SET_REF.3
 man/man3/BL_VCF_SET_REF_COUNT.3
 man/man3/BL_VCF_SET_SAMPLE_MAX.3
@@ -195,7 +189,7 @@ man/man3/bl_bed_gff_cmp.3
 man/man3/bl_bed_read.3
 man/man3/bl_bed_skip_header.3
 man/man3/bl_bed_write.3
-man/man3/bl_chromosome_name_cmp.3
+man/man3/bl_chrom_name_cmp.3
 man/man3/bl_gff_read.3
 man/man3/bl_gff_skip_header.3
 man/man3/bl_gff_to_bed.3
diff --git a/biolibc/buildlink3.mk b/biolibc/buildlink3.mk
index 3d395008de..376058421f 100644
--- a/biolibc/buildlink3.mk
+++ b/biolibc/buildlink3.mk
@@ -5,7 +5,7 @@ BUILDLINK_TREE+=	biolibc
 .if !defined(BIOLIBC_BUILDLINK3_MK)
 BIOLIBC_BUILDLINK3_MK:=
 
-BUILDLINK_API_DEPENDS.biolibc+=	biolibc>=0.1.3.45
+BUILDLINK_API_DEPENDS.biolibc+=	biolibc>=0.1.3.47
 BUILDLINK_PKGSRCDIR.biolibc?=	../../wip/biolibc
 .endif	# BIOLIBC_BUILDLINK3_MK
 
diff --git a/biolibc/distinfo b/biolibc/distinfo
index a179352abc..ace282e1d6 100644
--- a/biolibc/distinfo
+++ b/biolibc/distinfo
@@ -1,6 +1,6 @@
 $NetBSD$
 
-SHA1 (biolibc-0.1.3.45-f263d8fe16b3633d53e230c87ed402837b06ec7e.tar.gz) = 8db13f273b86571f2271c952be2e8998119dc334
-RMD160 (biolibc-0.1.3.45-f263d8fe16b3633d53e230c87ed402837b06ec7e.tar.gz) = f618e09f051de79849c46f3f390bbc867678de26
-SHA512 (biolibc-0.1.3.45-f263d8fe16b3633d53e230c87ed402837b06ec7e.tar.gz) = 86c23b1c1eb3c5c3b79943932ea976fa4e4fed34d34f8c12116c41cf798ad9300621a52aa87b9496e07fca51d31a6b50e6d9032e1658536941d1b015e8b84315
-Size (biolibc-0.1.3.45-f263d8fe16b3633d53e230c87ed402837b06ec7e.tar.gz) = 51210 bytes
+SHA1 (biolibc-0.1.3.47-5243f0faea6540532c90dd027b702b5c630062e4.tar.gz) = 1b990d8be8d831774bdb1a9a7c73bcdc1ad2d6af
+RMD160 (biolibc-0.1.3.47-5243f0faea6540532c90dd027b702b5c630062e4.tar.gz) = 5c3fa7a2f4b1a945f9db8b7a70346eb3a2ebfe31
+SHA512 (biolibc-0.1.3.47-5243f0faea6540532c90dd027b702b5c630062e4.tar.gz) = 4dbef2c7ba9314de0eb196c58054d70897fe448c9a360be812406ce661fe820a3dda255d03e21840020c046281b9b6a36e87b1e5ce6a215e27b4a2dc3e59859a
+Size (biolibc-0.1.3.47-5243f0faea6540532c90dd027b702b5c630062e4.tar.gz) = 50996 bytes