biolibc: Update to 0.1.3.18

[Jason Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Wed Jul 14 15:28:47 2021 -0500
Changeset:	1fc7b0709c6cd908e46782dd10c9b056308a1b6c

Modified Files:
	biolibc/Makefile
	biolibc/PLIST
	biolibc/buildlink3.mk
	biolibc/distinfo

Log Message:
biolibc: Update to 0.1.3.18

Document sam-buff functions
Clean up code
Rename sam-alignment functions to follow the pattern for other file types

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=1fc7b0709c6cd908e46782dd10c9b056308a1b6c

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 biolibc/Makefile      |  4 ++--
 biolibc/PLIST         | 15 +++++++++++----
 biolibc/buildlink3.mk |  2 +-
 biolibc/distinfo      |  8 ++++----
 4 files changed, 18 insertions(+), 11 deletions(-)

diffs:
diff --git a/biolibc/Makefile b/biolibc/Makefile
index f183647fcf..0c6f9310d5 100644
--- a/biolibc/Makefile
+++ b/biolibc/Makefile
@@ -1,9 +1,9 @@
 # $NetBSD$
 
-DISTNAME=	biolibc-0.1.3.17
+DISTNAME=	biolibc-0.1.3.18
 CATEGORIES=	biology
 MASTER_SITES=	${MASTER_SITE_GITHUB:=auerlab/}
-GITHUB_TAG=	92dd5ef5307d22123cf84037febc7a3c9feb09b1
+GITHUB_TAG=	a71d454e24d7cc61dc31b9e2023910b341e8bc08
 
 MAINTAINER=	bacon%NetBSD.org@localhost
 HOMEPAGE=	https://github.com/auerlab/biolibc
diff --git a/biolibc/PLIST b/biolibc/PLIST
index b4c9b3d648..fdd18c71df 100644
--- a/biolibc/PLIST
+++ b/biolibc/PLIST
@@ -50,10 +50,17 @@ man/man3/pos_list_allocate.3
 man/man3/pos_list_free.3
 man/man3/pos_list_from_csv.3
 man/man3/pos_list_sort.3
-man/man3/sam_alignment_copy.3
-man/man3/sam_alignment_free.3
-man/man3/sam_alignment_init.3
-man/man3/sam_alignment_read.3
+man/man3/sam_buff_add_alignment.3
+man/man3/sam_buff_alignment_ok.3
+man/man3/sam_buff_check_order.3
+man/man3/sam_buff_free_alignment.3
+man/man3/sam_buff_init.3
+man/man3/sam_buff_out_of_order.3
+man/man3/sam_buff_shift.3
+man/man3/sam_copy_alignment.3
+man/man3/sam_free_alignment.3
+man/man3/sam_init_alignment.3
+man/man3/sam_read_alignment.3
 man/man3/tsv_read_field.3
 man/man3/tsv_skip_field.3
 man/man3/tsv_skip_rest_of_line.3
diff --git a/biolibc/buildlink3.mk b/biolibc/buildlink3.mk
index e8033ce3d8..32ecfac2de 100644
--- a/biolibc/buildlink3.mk
+++ b/biolibc/buildlink3.mk
@@ -5,7 +5,7 @@ BUILDLINK_TREE+=	biolibc
 .if !defined(BIOLIBC_BUILDLINK3_MK)
 BIOLIBC_BUILDLINK3_MK:=
 
-BUILDLINK_API_DEPENDS.biolibc+=	biolibc>=0.1.3.17
+BUILDLINK_API_DEPENDS.biolibc+=	biolibc>=0.1.3.18
 BUILDLINK_PKGSRCDIR.biolibc?=	../../wip/biolibc
 .endif	# BIOLIBC_BUILDLINK3_MK
 
diff --git a/biolibc/distinfo b/biolibc/distinfo
index 4ea24726f9..dbed3c176f 100644
--- a/biolibc/distinfo
+++ b/biolibc/distinfo
@@ -1,6 +1,6 @@
 $NetBSD$
 
-SHA1 (biolibc-0.1.3.17-92dd5ef5307d22123cf84037febc7a3c9feb09b1.tar.gz) = b71ca939a8f0a53149ea81b84a173ba4827c1d6d
-RMD160 (biolibc-0.1.3.17-92dd5ef5307d22123cf84037febc7a3c9feb09b1.tar.gz) = 6b022989b2b8ec19313f5760ba79a372b6f3313f
-SHA512 (biolibc-0.1.3.17-92dd5ef5307d22123cf84037febc7a3c9feb09b1.tar.gz) = 72b1f7214f4a99b08fd37da7cac7860a77ec7b5c7978717cb116f8db139b95e27b3e78b03586abf3cddf6e729f46e58b1ab10f01dfdabd04cf2ad6048414db50
-Size (biolibc-0.1.3.17-92dd5ef5307d22123cf84037febc7a3c9feb09b1.tar.gz) = 39739 bytes
+SHA1 (biolibc-0.1.3.18-a71d454e24d7cc61dc31b9e2023910b341e8bc08.tar.gz) = f42ac3ed8fb706cd8bc68a15c4d86a8328bd6192
+RMD160 (biolibc-0.1.3.18-a71d454e24d7cc61dc31b9e2023910b341e8bc08.tar.gz) = 4335ad58cc66d1cb064c88b2c28d5c0b01dd0d57
+SHA512 (biolibc-0.1.3.18-a71d454e24d7cc61dc31b9e2023910b341e8bc08.tar.gz) = 7932b07d24b22023699036fda1381a10e8213e7de77412051e082b9ef10464411a849d58101f0da8c04147d60b0932e16a3fdd384dca383d1b58df8c94627bb2
+Size (biolibc-0.1.3.18-a71d454e24d7cc61dc31b9e2023910b341e8bc08.tar.gz) = 41956 bytes