biolibc: Update to 0.1.3.15

[Jason Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Tue Jul 13 16:15:47 2021 -0500
Changeset:	01a5ce5c86c46c3d308514ced1a886e81f86409f

Modified Files:
	biolibc/Makefile
	biolibc/PLIST
	biolibc/buildlink3.mk
	biolibc/distinfo

Log Message:
biolibc: Update to 0.1.3.15

Change plist to pos_list for readability
Document pos_list functions
Convert all malloc() and realloc() calls to xt_malloc() and xt_realloc()

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=01a5ce5c86c46c3d308514ced1a886e81f86409f

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 biolibc/Makefile      | 4 ++--
 biolibc/PLIST         | 7 ++++++-
 biolibc/buildlink3.mk | 2 +-
 biolibc/distinfo      | 8 ++++----
 4 files changed, 13 insertions(+), 8 deletions(-)

diffs:
diff --git a/biolibc/Makefile b/biolibc/Makefile
index 0ae6580ce5..501f39c776 100644
--- a/biolibc/Makefile
+++ b/biolibc/Makefile
@@ -1,9 +1,9 @@
 # $NetBSD$
 
-DISTNAME=	biolibc-0.1.3.14
+DISTNAME=	biolibc-0.1.3.15
 CATEGORIES=	biology
 MASTER_SITES=	${MASTER_SITE_GITHUB:=auerlab/}
-GITHUB_TAG=	caa29401e5470dbfd9472acc3414aab7991512e1
+GITHUB_TAG=	ca28cdb44a1694ba5d9cb9ec5d74064bfa670ae2
 
 MAINTAINER=	bacon%NetBSD.org@localhost
 HOMEPAGE=	https://github.com/auerlab/biolibc
diff --git a/biolibc/PLIST b/biolibc/PLIST
index c52d1bc90f..b4c9b3d648 100644
--- a/biolibc/PLIST
+++ b/biolibc/PLIST
@@ -5,7 +5,7 @@ include/biolibc/biolibc.h
 include/biolibc/biostring.h
 include/biolibc/dsv.h
 include/biolibc/gff.h
-include/biolibc/plist.h
+include/biolibc/pos-list.h
 include/biolibc/sam-buff.h
 include/biolibc/sam.h
 include/biolibc/vcf.h
@@ -45,6 +45,11 @@ man/man3/dsv_write_line.3
 man/man3/gff_read_feature.3
 man/man3/gff_to_bed.3
 man/man3/gff_write_feature.3
+man/man3/pos_list_add_position.3
+man/man3/pos_list_allocate.3
+man/man3/pos_list_free.3
+man/man3/pos_list_from_csv.3
+man/man3/pos_list_sort.3
 man/man3/sam_alignment_copy.3
 man/man3/sam_alignment_free.3
 man/man3/sam_alignment_init.3
diff --git a/biolibc/buildlink3.mk b/biolibc/buildlink3.mk
index fab9e65f8e..ccb1ed15a8 100644
--- a/biolibc/buildlink3.mk
+++ b/biolibc/buildlink3.mk
@@ -5,7 +5,7 @@ BUILDLINK_TREE+=	biolibc
 .if !defined(BIOLIBC_BUILDLINK3_MK)
 BIOLIBC_BUILDLINK3_MK:=
 
-BUILDLINK_API_DEPENDS.biolibc+=	biolibc>=0.1.3.14
+BUILDLINK_API_DEPENDS.biolibc+=	biolibc>=0.1.3.15
 BUILDLINK_PKGSRCDIR.biolibc?=	../../wip/biolibc
 .endif	# BIOLIBC_BUILDLINK3_MK
 
diff --git a/biolibc/distinfo b/biolibc/distinfo
index fca56c2186..50a76218c3 100644
--- a/biolibc/distinfo
+++ b/biolibc/distinfo
@@ -1,6 +1,6 @@
 $NetBSD$
 
-SHA1 (biolibc-0.1.3.14-caa29401e5470dbfd9472acc3414aab7991512e1.tar.gz) = 27074c739a60c01885a1e77f5a010090bf769633
-RMD160 (biolibc-0.1.3.14-caa29401e5470dbfd9472acc3414aab7991512e1.tar.gz) = 5f7e1c80b0446abec9fb01724b8000258d009a19
-SHA512 (biolibc-0.1.3.14-caa29401e5470dbfd9472acc3414aab7991512e1.tar.gz) = 650ec94c4f994fb6ee6ed1d212c4459034e98ce158c97c953649e9f8befec482227fe8c9539ca4ef23d941121902a9852ec1ff0a5a619cca5dc69e7b856a1d83
-Size (biolibc-0.1.3.14-caa29401e5470dbfd9472acc3414aab7991512e1.tar.gz) = 37766 bytes
+SHA1 (biolibc-0.1.3.15-ca28cdb44a1694ba5d9cb9ec5d74064bfa670ae2.tar.gz) = b7544c9a72a26d4384614c75dadae4d485025936
+RMD160 (biolibc-0.1.3.15-ca28cdb44a1694ba5d9cb9ec5d74064bfa670ae2.tar.gz) = f2b0a7319ca62c585ee015e2448d141c660c62d4
+SHA512 (biolibc-0.1.3.15-ca28cdb44a1694ba5d9cb9ec5d74064bfa670ae2.tar.gz) = af23d5702eece99220f624145f2b21cb4568956da8657dcb7a910fb4584aa83411368f58ce441fdb249776cd319b470a56cb29a5001602a5dae408db4c987be5
+Size (biolibc-0.1.3.15-ca28cdb44a1694ba5d9cb9ec5d74064bfa670ae2.tar.gz) = 39092 bytes