peak-classifier: Update to 0.1.0.9

[Jason Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Sun Jun 13 18:30:24 2021 -0500
Changeset:	3693dabd4d02551e5fbece1765d2db1c841770d9

Modified Files:
	peak-classifier/Makefile
	peak-classifier/PLIST
	peak-classifier/distinfo

Log Message:
peak-classifier: Update to 0.1.0.9

Add extract-genes script to extract features from BED file
with augmented GFF features
Add man pages for feature-view and extract-genes

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=3693dabd4d02551e5fbece1765d2db1c841770d9

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 peak-classifier/Makefile | 14 ++++----------
 peak-classifier/PLIST    |  4 ++++
 peak-classifier/distinfo |  8 ++++----
 3 files changed, 12 insertions(+), 14 deletions(-)

diffs:
diff --git a/peak-classifier/Makefile b/peak-classifier/Makefile
index d3a8566856..67475c5e2d 100644
--- a/peak-classifier/Makefile
+++ b/peak-classifier/Makefile
@@ -1,9 +1,9 @@
 # $NetBSD$
 
-DISTNAME=	peak-classifier-0.1.0.5
+DISTNAME=	peak-classifier-0.1.0.9
 CATEGORIES=	biology
 MASTER_SITES=	${MASTER_SITE_GITHUB:=auerlab/}
-GITHUB_TAG=	7f059e44a2b077f13ab42d85eea989c9e09b203c
+GITHUB_TAG=	69e702c224e71a3016b40bc67d742a32f990e67b
 
 MAINTAINER=	bacon%NetBSD.org@localhost
 HOMEPAGE=	https://github.com/auerlab/peak-classifier
@@ -11,16 +11,10 @@ COMMENT=	Classify ChIP/ATAC-Seq peaks based on features provided in a GFF
 LICENSE=	2-clause-bsd
 
 DEPENDS+=	bedtools>=0:../../biology/bedtools
-
-REPLACE_PYTHON=	feature-view.py
-
-.include "../../mk/bsd.prefs.mk"
-
-# Until matplotlib is fixed
-.if ${OPSYS} != Darwin
 DEPENDS+=	${PYPKGPREFIX}-matplotlib>=3.0:../../graphics/py-matplotlib
 DEPENDS+=	${PYPKGPREFIX}-Tk-[0-9]*:../../x11/py-Tk
-.endif
+
+REPLACE_PYTHON=	feature-view.py
 
 pre-build:
 	cd ${WRKSRC} && make depend PREFIX=${PREFIX}
diff --git a/peak-classifier/PLIST b/peak-classifier/PLIST
index 9e316f0861..8045d6f9cb 100644
--- a/peak-classifier/PLIST
+++ b/peak-classifier/PLIST
@@ -1,6 +1,10 @@
 @comment $NetBSD$
+bin/extract-genes
 bin/feature-view
 bin/filter-overlaps
 bin/peak-classifier
+libexec/extract-genes.awk
+man/man1/extract-genes.1
+man/man1/feature-view.1
 man/man1/filter-overlaps.1
 man/man1/peak-classifier.1
diff --git a/peak-classifier/distinfo b/peak-classifier/distinfo
index 93b9d4aead..3464ec8e7d 100644
--- a/peak-classifier/distinfo
+++ b/peak-classifier/distinfo
@@ -1,6 +1,6 @@
 $NetBSD$
 
-SHA1 (peak-classifier-0.1.0.5-7f059e44a2b077f13ab42d85eea989c9e09b203c.tar.gz) = 88fd6017026ea0d5a418bc6f367d5957c4688cdf
-RMD160 (peak-classifier-0.1.0.5-7f059e44a2b077f13ab42d85eea989c9e09b203c.tar.gz) = db0bb3832948479e921ee1067a22cc08986338f2
-SHA512 (peak-classifier-0.1.0.5-7f059e44a2b077f13ab42d85eea989c9e09b203c.tar.gz) = b737927604293ea696eeb451619dc2811c9ebe0a037a136e6541c96975ad70d151cd01b773c6c49ee26cc1814d2f3085cc85854aedf3228a45c4883435178cb7
-Size (peak-classifier-0.1.0.5-7f059e44a2b077f13ab42d85eea989c9e09b203c.tar.gz) = 82269 bytes
+SHA1 (peak-classifier-0.1.0.9-69e702c224e71a3016b40bc67d742a32f990e67b.tar.gz) = 1df729986eaa455042c91555fb9c243607719012
+RMD160 (peak-classifier-0.1.0.9-69e702c224e71a3016b40bc67d742a32f990e67b.tar.gz) = 77f5a918524e9f86e5f13a6c038e59ffdf87db83
+SHA512 (peak-classifier-0.1.0.9-69e702c224e71a3016b40bc67d742a32f990e67b.tar.gz) = d70109fc0bd21ea82dd452768bd694de1569bda7efac231f55ee972ee913120e968a8bbead9094043b17c1a703c7db2aa34c348c7c9e958b5a7c7fa0c0599060
+Size (peak-classifier-0.1.0.9-69e702c224e71a3016b40bc67d742a32f990e67b.tar.gz) = 85802 bytes