bcftools: Clean up Makefile, verify bmake test

[Jason Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Wed Jul 22 10:13:59 2020 -0500
Changeset:	8087334d981efe9c458756f04b8ee49c44866df4

Modified Files:
	bcftools/Makefile
Removed Files:
	bcftools/files/pkg-message.in

Log Message:
bcftools: Clean up Makefile, verify bmake test

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=8087334d981efe9c458756f04b8ee49c44866df4

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 bcftools/Makefile             | 6 ++++--
 bcftools/files/pkg-message.in | 7 -------
 2 files changed, 4 insertions(+), 9 deletions(-)

diffs:
diff --git a/bcftools/Makefile b/bcftools/Makefile
index 22779841b9..ba2eef4b79 100644
--- a/bcftools/Makefile
+++ b/bcftools/Makefile
@@ -18,12 +18,14 @@ SUBST_SED.version=	-e "s|m4_esyscmd_s(\[./version.sh 2>/dev/null\])|[${PKGVERSIO
 SUBST_FILES.version=	configure.ac
 
 REPLACE_PERL+=		misc/*.pl
-REPLACE_PERL+=		misc/plot-vcfstats
 REPLACE_PERL+=		misc/fix-broken-GATK-Double-vs-Integer
+REPLACE_PERL+=		misc/plot-vcfstats
 REPLACE_PERL+=		test/test.pl
 REPLACE_PYTHON+=	misc/*.py
 
-MAKE_ENV+=	USE_GPL=1
+CONFIGURE_ARGS+=	--with-htslib=system
+MAKE_ENV+=		USE_GPL=1
+TEST_TARGET=		test
 
 pre-configure:
 	cd ${WRKSRC} && autoreconf -if
diff --git a/bcftools/files/pkg-message.in b/bcftools/files/pkg-message.in
deleted file mode 100644
index ef35a871f4..0000000000
--- a/bcftools/files/pkg-message.in
+++ /dev/null
@@ -1,7 +0,0 @@
-The miscellaneous tools included with Bcftools have been installed to
-%%PREFIX%%/bin/samtools_misc
-
-Add that directory to your path if you want to use these tools.
-
-Some of these tools depend on Perl5/Python, and it will need to be installed to
-use them.