bcftools: Clean up Makefile

[Jason Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Wed Jul 22 08:03:29 2020 -0500
Changeset:	33a7aa5dd9bb51bdd4e8457c1194654cda5960e3

Modified Files:
	bcftools/Makefile

Log Message:
bcftools: Clean up Makefile

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=33a7aa5dd9bb51bdd4e8457c1194654cda5960e3

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 bcftools/Makefile | 16 +++++++++-------
 1 file changed, 9 insertions(+), 7 deletions(-)

diffs:
diff --git a/bcftools/Makefile b/bcftools/Makefile
index 5010f65ac5..9e0fed8d6f 100644
--- a/bcftools/Makefile
+++ b/bcftools/Makefile
@@ -3,24 +3,26 @@
 DISTNAME=	bcftools-1.10.2
 CATEGORIES=	biology
 MASTER_SITES=	${MASTER_SITE_GITHUB:=samtools/}
-GITHUB_PROJECT=	bcftools
 
 MAINTAINER=	bacon%NetBSD.org@localhost
 HOMEPAGE=	https://www.htslib.org/
 COMMENT=	Tools for manipulating BCF and VCF variant call files
 LICENSE=	mit
 
-REPLACE_PERL+=		misc/*.pl misc/plot-vcfstats test/test.pl
-REPLACE_PYTHON+=	misc/*.py
+USE_TOOLS+=	autoconf automake autoreconf bash gmake perl
+GNU_CONFIGURE=	yes
 
 SUBST_CLASSES+=		version
 SUBST_STAGE.version=	pre-configure
 SUBST_SED.version=	-e "s|m4_esyscmd_s(\[./version.sh 2>/dev/null\])|[${PKGVERSION_NOREV}]|"
-SUBST_FILES.version+=	configure.ac
+SUBST_FILES.version=	configure.ac
+
+REPLACE_PERL+=		misc/*.pl
+REPLACE_PERL+=		misc/plot-vcfstats
+REPLACE_PERL+=		misc/fix-broken-GATK-Double-vs-Integer
+REPLACE_PERL+=		test/test.pl
+REPLACE_PYTHON+=	misc/*.py
 
-USE_LANGUAGES=	c c++
-USE_TOOLS+=	autoconf automake autoreconf bash gmake perl
-GNU_CONFIGURE=	yes
 MAKE_ENV+=	USE_GPL=1
 
 pre-configure: