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ncbi-blast+: Clean up
Module Name: pkgsrc-wip
Committed By: Jason W. Bacon <bacon%NetBSD.org@localhost>
Pushed By: outpaddling
Date: Tue Mar 27 14:27:05 2018 -0500
Changeset: 4677c0d4b5f379aee850cfdb187fd9f265a23eca
Modified Files:
ncbi-blast+/Makefile
Log Message:
ncbi-blast+: Clean up
To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=4677c0d4b5f379aee850cfdb187fd9f265a23eca
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
diffstat:
ncbi-blast+/Makefile | 8 ++------
1 file changed, 2 insertions(+), 6 deletions(-)
diffs:
diff --git a/ncbi-blast+/Makefile b/ncbi-blast+/Makefile
index 30ceddc7b3..96a422e9b2 100644
--- a/ncbi-blast+/Makefile
+++ b/ncbi-blast+/Makefile
@@ -14,7 +14,7 @@ CATEGORIES= biology
MASTER_SITES= https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ \
https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PORTVERSION}/
-MAINTAINER= jwb%FreeBSD.org@localhost
+MAINTAINER= bacon%NetBSD.org@localhost
HOMEPAGE= http://blast.ncbi.nlm.nih.gov/
COMMENT= NCBI implementation of Basic Local Alignment Search Tool
LICENSE= public-domain
@@ -39,13 +39,11 @@ WRKSRC= ${WRKDIR}/${DISTNAME}/c++
# The test for amq can hang, but amq is not needed so just avoid the test
# configure chooses /usr/local/bin/ar with no flags
-# FreeBSD boost port flagged by configure as untested version
+# Resolve a conflict with libproj by moving libs to a subdir
CONFIGURE_ENV= ncbi_cv_prog_amq_w=no
CONFIGURE_ARGS+= AR="ar cr" --without-boost
CONFIGURE_ARGS+= --libdir=${PREFIX}/lib/ncbi-tools++
-CFLAGS+= -fopenmp
-CXXFLAGS+= -fopenmp
MAKE_JOBS_SAFE= no # Intermittent issues
PORTVERSION= 2.7.1
@@ -58,8 +56,6 @@ PORTVERSION= 2.7.1
CONFIGURE_ENV+= ac_cv_func_statfs=no
.endif
-# --libdir=${PREFIX}/lib/ncbi-tools++ doesn't respect DESTDIR, so do
-# a postinstall mv.
post-install:
${RM} ${DESTDIR}${PREFIX}/include/ncbi-tools++/*/*/.cvsignore.extra
${STRIP} ${DESTDIR}${PREFIX}/lib/ncbi-tools++/*.so
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