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wip/n*: fix pkglint indentation warnings
Module Name: pkgsrc-wip
Committed By: Roland Illig <roland.illig%gmx.de@localhost>
Pushed By: rillig
Date: Sat Jan 27 21:50:42 2018 +0000
Changeset: 9488afbf0dcc0b8ddb805e8483c96f4b1547c46d
Modified Files:
naev/PLIST
nag/Makefile
naturaldocs/Makefile
nautilus-dropbox/Makefile
nautilus-search-tool/Makefile
nautilus-sound-converter/Makefile
nautilus/buildlink3.mk
nauty/Makefile
navi2ch-current/Makefile
ncbi-blast/PLIST
ncp/Makefile
neb-cd512/Makefile
neb-hdtoolbox/Makefile
necpp-git/Makefile
nehe-opengl-tutorials/Makefile
nemo/Makefile
neovim-git/Makefile
neovim-git/options.mk
netatalk/Makefile
netatalk/buildlink3.mk
netkit-routed/Makefile
netkit-telnet/Makefile
netkit-tftp/PLIST
netlogo/Makefile
netwib/Makefile
netwmpager/Makefile
netwox/Makefile
netx/Makefile
nicotine+/Makefile
nightfall/Makefile
nih-current/Makefile
nitrogen/Makefile
njb-sharp/buildlink3.mk
nnrpd/PLIST
nnrpd/options.mk
nongnu-libunwind-git/Makefile
nongnu-libunwind-git/buildlink3.mk
nostromo/Makefile
nrg4iso/Makefile
nsp/Makefile
nspr-hg/Makefile
nspr-hg/buildlink3.mk
nss-hg/Makefile
nss-pam-ldapd/Makefile
ntimed-git/Makefile
nuget-git/Makefile
nullpop/Makefile
numactl/PLIST
Log Message:
wip/n*: fix pkglint indentation warnings
pkglint -Wall -F -o aligned n*/
To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=9488afbf0dcc0b8ddb805e8483c96f4b1547c46d
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
diffstat:
naev/PLIST | 2 +-
nag/Makefile | 40 +-
naturaldocs/Makefile | 3 +-
nautilus-dropbox/Makefile | 10 +-
nautilus-search-tool/Makefile | 2 +-
nautilus-sound-converter/Makefile | 8 +-
nautilus/buildlink3.mk | 2 +-
nauty/Makefile | 12 +-
navi2ch-current/Makefile | 4 +-
ncbi-blast/PLIST | 3142 ++++++++++++++++++------------------
ncp/Makefile | 2 +-
neb-cd512/Makefile | 4 +-
neb-hdtoolbox/Makefile | 4 +-
necpp-git/Makefile | 2 +-
nehe-opengl-tutorials/Makefile | 2 +-
nemo/Makefile | 6 +-
neovim-git/Makefile | 8 +-
neovim-git/options.mk | 4 +-
netatalk/Makefile | 12 +-
netatalk/buildlink3.mk | 4 +-
netkit-routed/Makefile | 2 +-
netkit-telnet/Makefile | 10 +-
netkit-tftp/PLIST | 2 +-
netlogo/Makefile | 15 +-
netwib/Makefile | 2 +-
netwmpager/Makefile | 4 +-
netwox/Makefile | 2 +-
netx/Makefile | 8 +-
nicotine+/Makefile | 2 +-
nightfall/Makefile | 2 +-
nih-current/Makefile | 8 +-
nitrogen/Makefile | 12 +-
njb-sharp/buildlink3.mk | 2 +-
nnrpd/PLIST | 12 +-
nnrpd/options.mk | 2 +-
nongnu-libunwind-git/Makefile | 2 +-
nongnu-libunwind-git/buildlink3.mk | 2 +-
nostromo/Makefile | 70 +-
nrg4iso/Makefile | 6 +-
nsp/Makefile | 2 +-
nspr-hg/Makefile | 14 +-
nspr-hg/buildlink3.mk | 6 +-
nss-hg/Makefile | 6 +-
nss-pam-ldapd/Makefile | 20 +-
ntimed-git/Makefile | 2 +-
nuget-git/Makefile | 2 +-
nullpop/Makefile | 2 +-
numactl/PLIST | 2 +-
48 files changed, 1748 insertions(+), 1746 deletions(-)
diffs:
diff --git a/naev/PLIST b/naev/PLIST
index f8b758038d..9dea216361 100644
--- a/naev/PLIST
+++ b/naev/PLIST
@@ -1,12 +1,12 @@
@comment $NetBSD: PLIST,v 1.1 2015/08/19 20:11:36 yhardy Exp $
bin/naev
man/man6/naev.6
+share/appdata/naev.appdata.xml
share/applications/naev.desktop
share/doc/naev/AUTHORS
share/doc/naev/LICENSE
share/doc/naev/README
share/doc/naev/TODO
-share/appdata/naev.appdata.xml
share/naev/naev-confupdate.sh
share/naev/ndata
share/pixmaps/naev.png
diff --git a/nag/Makefile b/nag/Makefile
index bc5d2923e9..3c63a7390d 100644
--- a/nag/Makefile
+++ b/nag/Makefile
@@ -4,7 +4,7 @@ DISTNAME= nag-h3-${NAGVER}
PKGNAME= nag-${NAGVER}
CATEGORIES= www time
MASTER_SITES= http://ftp.horde.org/pub/nag/ \
- ftp://ftp.horde.org/pub/nag/
+ ftp://ftp.horde.org/pub/nag/
MAINTAINER= frederic%fauberteau.org@localhost
HOMEPAGE= https://www.horde.org/nag/
@@ -14,21 +14,21 @@ LICENSE= gnu-gpl-v2
DEPENDS+= horde>=3.2:../../www/horde
DEPENDS+= ${PHP_PKG_PREFIX}-pear-Date-[0-9]*:../../time/pear-Date
-USE_TOOLS+= pax
+USE_TOOLS+= pax
.include "../../mk/bsd.prefs.mk"
DOCDIR= ${PREFIX}/share/doc/nag
EGDIR= ${PREFIX}/share/examples/nag
HORDEDIR= ${PREFIX}/share/horde
-NAGDIR= ${HORDEDIR}/nag
-NAGVER= 2.3.6
+NAGDIR= ${HORDEDIR}/nag
+NAGVER= 2.3.6
PAXDIRS= js lib locale po scripts tasklists templates themes
-INSTALLATION_DIRS+=${DOCDIR}
-INSTALLATION_DIRS+=${EGDIR}
-INSTALLATION_DIRS+=${NAGDIR}/config
-INSTALLATION_DIRS+=${PAXDIRS}
+INSTALLATION_DIRS+= ${DOCDIR}
+INSTALLATION_DIRS+= ${EGDIR}
+INSTALLATION_DIRS+= ${NAGDIR}/config
+INSTALLATION_DIRS+= ${PAXDIRS}
REPLACE_INTERPRETER+= php
REPLACE.php.old= .*/bin.php
@@ -43,9 +43,9 @@ MESSAGE_SUBST+= NAGDIR=${NAGDIR:Q}
MESSAGE_SUBST+= PKG_SYSCONFDIR=${PKG_SYSCONFDIR:Q}
PKG_SYSCONFSUBDIR?= httpd
-USE_PKGINSTALL= YES
+USE_PKGINSTALL= YES
-SUBST_CLASSES+= files
+SUBST_CLASSES+= files
SUBST_STAGE.files= post-build
SUBST_FILES.files= nag.conf.dist
SUBST_SED.files= -e "s|@NAGDIR@|${NAGDIR}|g"
@@ -53,20 +53,20 @@ SUBST_MESSAGE.files= Fixing configuration files.
PKG_USERS_VARS+= APACHE_USER
-CONF_FILES= ${EGDIR}/nag.conf ${PKG_SYSCONFDIR}/nag.conf
+CONF_FILES= ${EGDIR}/nag.conf ${PKG_SYSCONFDIR}/nag.conf
CONF_FILES_PERMS+= ${NAGDIR}/config/conf.xml.dist \
- ${NAGDIR}/config/conf.xml \
- ${APACHE_USER} ${ROOT_GROUP} 0440
+ ${NAGDIR}/config/conf.xml \
+ ${APACHE_USER} ${ROOT_GROUP} 0440
CONF_FILES_PERMS+= ${NAGDIR}/config/hooks.php.dist \
- ${NAGDIR}/config/hooks.php \
- ${APACHE_USER} ${ROOT_GROUP} 0440
+ ${NAGDIR}/config/hooks.php \
+ ${APACHE_USER} ${ROOT_GROUP} 0440
CONF_FILES_PERMS+= ${NAGDIR}/config/menu.php.dist \
- ${NAGDIR}/config/menu.php \
- ${APACHE_USER} ${ROOT_GROUP} 0440
+ ${NAGDIR}/config/menu.php \
+ ${APACHE_USER} ${ROOT_GROUP} 0440
CONF_FILES_PERMS+= ${NAGDIR}/config/prefs.php.dist \
- ${NAGDIR}/config/prefs.php \
- ${APACHE_USER} ${ROOT_GROUP} 0440
-SPECIAL_PERMS+= ${NAGDIR}/config ${APACHE_USER} ${SHAREGRP} 0750
+ ${NAGDIR}/config/prefs.php \
+ ${APACHE_USER} ${ROOT_GROUP} 0440
+SPECIAL_PERMS+= ${NAGDIR}/config ${APACHE_USER} ${SHAREGRP} 0750
do-build:
${CP} ${FILESDIR}/nag.conf.dist ${WRKSRC}/nag.conf.dist
diff --git a/naturaldocs/Makefile b/naturaldocs/Makefile
index 734d8e42d3..4db4936766 100644
--- a/naturaldocs/Makefile
+++ b/naturaldocs/Makefile
@@ -27,7 +27,8 @@ INSTALL_DIRS= Info JavaScript Modules Modules/NaturalDocs Modules/NaturalDocs/Bu
Modules/NaturalDocs/Settings Modules/NaturalDocs/SymbolTable \
Modules/NaturalDocs/Topics Styles Config Help Help/example Help/images \
Help/images/header Help/images/menu Help/javascript
-INSTALLATION_DIRS= ${NDDIR}
+INSTALLATION_DIRS= \
+ ${NDDIR}
do-install:
cd ${WRKSRC} && pax -wr * ${DESTDIR}${NDDIR}
diff --git a/nautilus-dropbox/Makefile b/nautilus-dropbox/Makefile
index 653780b676..ae96c5a846 100644
--- a/nautilus-dropbox/Makefile
+++ b/nautilus-dropbox/Makefile
@@ -14,11 +14,11 @@ BUILD_DEPENDS+= ${PYPKGPREFIX}-docutils-[0-9]*:../../textproc/py-docutils
DEPENDS+= ${PYPKGPREFIX}-gtk2-[0-9]*:../../x11/py-gtk2
-GNU_CONFIGURE= yes
-USE_LIBTOOL= yes
-USE_TOOLS+= pkg-config
-REPLACE_PYTHON= dropbox.in
-REPLACE_PYTHON+= rst2man.py
+GNU_CONFIGURE= yes
+USE_LIBTOOL= yes
+USE_TOOLS+= pkg-config
+REPLACE_PYTHON= dropbox.in
+REPLACE_PYTHON+= rst2man.py
PYTHON_VERSIONS_INCOMPATIBLE= 34 35 36 # py-gtk2, py-docutils
.include "../../lang/python/application.mk"
diff --git a/nautilus-search-tool/Makefile b/nautilus-search-tool/Makefile
index 125a2d701a..06f076413c 100644
--- a/nautilus-search-tool/Makefile
+++ b/nautilus-search-tool/Makefile
@@ -11,7 +11,7 @@ HOMEPAGE= http://nautsearchtool.sourceforge.net/
COMMENT= Extension to have search files on popup menu
GNU_CONFIGURE= yes
-USE_TOOLS+= pkg-config intltool
+USE_TOOLS+= pkg-config intltool
USE_LIBTOOL= yes
USE_LANGUAGES+= c c++
diff --git a/nautilus-sound-converter/Makefile b/nautilus-sound-converter/Makefile
index 5254056c00..e1146c993d 100644
--- a/nautilus-sound-converter/Makefile
+++ b/nautilus-sound-converter/Makefile
@@ -13,11 +13,11 @@ COMMENT= Nautilus extension to convert audio files
#LICENSE= # TODO: (see mk/license.mk)
-GNU_CONFIGURE= yes
+GNU_CONFIGURE= yes
USE_PKGLOCALEDIR= yes
-USE_LIBTOOL= yes
-USE_TOOLS+= perl intltool msgfmt gmake pkg-config
-USE_LANGUAGES+= c c++
+USE_LIBTOOL= yes
+USE_TOOLS+= perl intltool msgfmt gmake pkg-config
+USE_LANGUAGES+= c c++
GCONF_SCHEMAS+= data/nautilus-sound-converter.schemas
diff --git a/nautilus/buildlink3.mk b/nautilus/buildlink3.mk
index 594f114fed..8f8bbe3d95 100644
--- a/nautilus/buildlink3.mk
+++ b/nautilus/buildlink3.mk
@@ -7,7 +7,7 @@ NAUTILUS_BUILDLINK3_MK:=
BUILDLINK_API_DEPENDS.nautilus+= nautilus>=2.12.1nb1
BUILDLINK_ABI_DEPENDS.nautilus+= nautilus>=2.32.2.1nb22
-BUILDLINK_PKGSRCDIR.nautilus?= ../../sysutils/nautilus
+BUILDLINK_PKGSRCDIR.nautilus?= ../../sysutils/nautilus
.include "../../devel/GConf/buildlink3.mk"
.include "../../devel/glib2/buildlink3.mk"
diff --git a/nauty/Makefile b/nauty/Makefile
index 9eada7914f..2fead0cc3e 100644
--- a/nauty/Makefile
+++ b/nauty/Makefile
@@ -11,19 +11,19 @@ HOMEPAGE= http://cs.anu.edu.au/~bdm/nauty/
COMMENT= Brendan McKay's graph isomorphism tester
#LICENSE= # TODO: (see mk/license.mk)
-MAKE_JOBS_SAFE= no
+MAKE_JOBS_SAFE= no
GNU_CONFIGURE= yes
MAKE_FILE= makefile
USE_TOOLS+= gmake
USE_LANGUAGES= c
-PROGFILES= NRswitchg complg dreadnaut gentourng pickg \
- addedgeg copyg dretog labelg planarg amtog countg \
- genbg listg shortg biplabg deledgeg geng multig showg \
- arg directg genrang newedgeg
+PROGFILES= NRswitchg complg dreadnaut gentourng pickg \
+ addedgeg copyg dretog labelg planarg amtog countg \
+ genbg listg shortg biplabg deledgeg geng multig showg \
+ arg directg genrang newedgeg
-INSTALLATION_DIRS= bin
+INSTALLATION_DIRS= bin
do-install:
diff --git a/navi2ch-current/Makefile b/navi2ch-current/Makefile
index 38fea435a6..f2bfe61be3 100644
--- a/navi2ch-current/Makefile
+++ b/navi2ch-current/Makefile
@@ -21,8 +21,8 @@ USE_TOOLS+= gmake
INFO_FILES= yes
EMACS_MODULES= base
-CONFIGURE_ARGS+=--with-icondir=${PREFIX}/share/navi2ch/icons
-CONFIGURE_ARGS+=${CONFIGURE_ARGS.${EMACS_FLAVOR}}
+CONFIGURE_ARGS+= --with-icondir=${PREFIX}/share/navi2ch/icons
+CONFIGURE_ARGS+= ${CONFIGURE_ARGS.${EMACS_FLAVOR}}
CONFIGURE_ARGS.emacs= --with-lispdir=${EMACS_LISPPREFIX}/navi2ch
CONFIGURE_ARGS.xemacs= --with-packagedir=${EMACS_LISPPREFIX:C|/lisp$||}
diff --git a/ncbi-blast/PLIST b/ncbi-blast/PLIST
index ffa282239c..c6aeb4e0c7 100644
--- a/ncbi-blast/PLIST
+++ b/ncbi-blast/PLIST
@@ -1,9 +1,9 @@
@comment $NetBSD: PLIST,v 1.4 2015/03/05 22:31:07 outpaddling Exp $
+bin/blast_formatter
bin/blastdb_aliastool
bin/blastdbcheck
bin/blastdbcmd
bin/blastdbcp
-bin/blast_formatter
bin/blastn
bin/blastp
bin/blastx
@@ -36,14 +36,14 @@ include/ncbi-tools++/algo/blast/api/blast_dbindex.hpp
include/ncbi-tools++/algo/blast/api/blast_exception.hpp
include/ncbi-tools++/algo/blast/api/blast_mtlock.hpp
include/ncbi-tools++/algo/blast/api/blast_nucl_options.hpp
+include/ncbi-tools++/algo/blast/api/blast_options.hpp
include/ncbi-tools++/algo/blast/api/blast_options_builder.hpp
include/ncbi-tools++/algo/blast/api/blast_options_handle.hpp
-include/ncbi-tools++/algo/blast/api/blast_options.hpp
include/ncbi-tools++/algo/blast/api/blast_prot_options.hpp
include/ncbi-tools++/algo/blast/api/blast_results.hpp
include/ncbi-tools++/algo/blast/api/blast_rps_options.hpp
-include/ncbi-tools++/algo/blast/api/blast_seqinfosrc_aux.hpp
include/ncbi-tools++/algo/blast/api/blast_seqinfosrc.hpp
+include/ncbi-tools++/algo/blast/api/blast_seqinfosrc_aux.hpp
include/ncbi-tools++/algo/blast/api/blast_types.hpp
include/ncbi-tools++/algo/blast/api/blastx_options.hpp
include/ncbi-tools++/algo/blast/api/cdd_pssm_input.hpp
@@ -56,16 +56,16 @@ include/ncbi-tools++/algo/blast/api/local_blast.hpp
include/ncbi-tools++/algo/blast/api/local_db_adapter.hpp
include/ncbi-tools++/algo/blast/api/local_search.hpp
include/ncbi-tools++/algo/blast/api/msa_pssm_input.hpp
-include/ncbi-tools++/algo/blast/api/objmgrfree_query_data.hpp
include/ncbi-tools++/algo/blast/api/objmgr_query_data.hpp
+include/ncbi-tools++/algo/blast/api/objmgrfree_query_data.hpp
include/ncbi-tools++/algo/blast/api/phiblast_nucl_options.hpp
include/ncbi-tools++/algo/blast/api/phiblast_prot_options.hpp
include/ncbi-tools++/algo/blast/api/prelim_stage.hpp
+include/ncbi-tools++/algo/blast/api/psi_pssm_input.hpp
include/ncbi-tools++/algo/blast/api/psibl2seq.hpp
include/ncbi-tools++/algo/blast/api/psiblast.hpp
include/ncbi-tools++/algo/blast/api/psiblast_iteration.hpp
include/ncbi-tools++/algo/blast/api/psiblast_options.hpp
-include/ncbi-tools++/algo/blast/api/psi_pssm_input.hpp
include/ncbi-tools++/algo/blast/api/pssm_engine.hpp
include/ncbi-tools++/algo/blast/api/pssm_input.hpp
include/ncbi-tools++/algo/blast/api/query_data.hpp
@@ -92,11 +92,11 @@ include/ncbi-tools++/algo/blast/api/version.hpp
include/ncbi-tools++/algo/blast/api/windowmask_filter.hpp
include/ncbi-tools++/algo/blast/blastinput/blast_args.hpp
include/ncbi-tools++/algo/blast/blastinput/blast_fasta_input.hpp
-include/ncbi-tools++/algo/blast/blastinput/blast_input_aux.hpp
include/ncbi-tools++/algo/blast/blastinput/blast_input.hpp
+include/ncbi-tools++/algo/blast/blastinput/blast_input_aux.hpp
+include/ncbi-tools++/algo/blast/blastinput/blast_scope_src.hpp
include/ncbi-tools++/algo/blast/blastinput/blastn_args.hpp
include/ncbi-tools++/algo/blast/blastinput/blastp_args.hpp
-include/ncbi-tools++/algo/blast/blastinput/blast_scope_src.hpp
include/ncbi-tools++/algo/blast/blastinput/blastx_args.hpp
include/ncbi-tools++/algo/blast/blastinput/cmdline_flags.hpp
include/ncbi-tools++/algo/blast/blastinput/deltablast_args.hpp
@@ -173,11 +173,11 @@ include/ncbi-tools++/algo/blast/core/phi_lookup.h
include/ncbi-tools++/algo/blast/core/split_query.h
include/ncbi-tools++/algo/blast/dbindex/dbindex.hpp
include/ncbi-tools++/algo/blast/dbindex/dbindex_sp.hpp
+include/ncbi-tools++/algo/blast/dbindex/sequence_istream.hpp
include/ncbi-tools++/algo/blast/dbindex/sequence_istream_bdb.hpp
include/ncbi-tools++/algo/blast/dbindex/sequence_istream_fasta.hpp
-include/ncbi-tools++/algo/blast/dbindex/sequence_istream.hpp
-include/ncbi-tools++/algo/blast/format/blastfmtutil.hpp
include/ncbi-tools++/algo/blast/format/blast_format.hpp
+include/ncbi-tools++/algo/blast/format/blastfmtutil.hpp
include/ncbi-tools++/algo/blast/format/blastxml2_format.hpp
include/ncbi-tools++/algo/blast/format/blastxml_format.hpp
include/ncbi-tools++/algo/blast/format/build_archive.hpp
@@ -189,48 +189,48 @@ include/ncbi-tools++/algo/dustmask/sdust.tex
include/ncbi-tools++/algo/dustmask/symdust.hpp
include/ncbi-tools++/algo/segmask/segmask.hpp
include/ncbi-tools++/algo/winmask/README.API
-include/ncbi-tools++/algo/winmask/seq_masker_cache_boost.hpp
include/ncbi-tools++/algo/winmask/seq_masker.hpp
+include/ncbi-tools++/algo/winmask/seq_masker_cache_boost.hpp
+include/ncbi-tools++/algo/winmask/seq_masker_istat.hpp
include/ncbi-tools++/algo/winmask/seq_masker_istat_ascii.hpp
include/ncbi-tools++/algo/winmask/seq_masker_istat_bin.hpp
include/ncbi-tools++/algo/winmask/seq_masker_istat_factory.hpp
-include/ncbi-tools++/algo/winmask/seq_masker_istat.hpp
include/ncbi-tools++/algo/winmask/seq_masker_istat_oascii.hpp
include/ncbi-tools++/algo/winmask/seq_masker_istat_obinary.hpp
+include/ncbi-tools++/algo/winmask/seq_masker_ostat.hpp
include/ncbi-tools++/algo/winmask/seq_masker_ostat_ascii.hpp
include/ncbi-tools++/algo/winmask/seq_masker_ostat_bin.hpp
include/ncbi-tools++/algo/winmask/seq_masker_ostat_factory.hpp
-include/ncbi-tools++/algo/winmask/seq_masker_ostat.hpp
+include/ncbi-tools++/algo/winmask/seq_masker_ostat_opt.hpp
include/ncbi-tools++/algo/winmask/seq_masker_ostat_opt_ascii.hpp
include/ncbi-tools++/algo/winmask/seq_masker_ostat_opt_bin.hpp
-include/ncbi-tools++/algo/winmask/seq_masker_ostat_opt.hpp
include/ncbi-tools++/algo/winmask/seq_masker_score.hpp
-include/ncbi-tools++/algo/winmask/seq_masker_score_mean_glob.hpp
include/ncbi-tools++/algo/winmask/seq_masker_score_mean.hpp
+include/ncbi-tools++/algo/winmask/seq_masker_score_mean_glob.hpp
include/ncbi-tools++/algo/winmask/seq_masker_score_min.hpp
include/ncbi-tools++/algo/winmask/seq_masker_uset_array.hpp
include/ncbi-tools++/algo/winmask/seq_masker_uset_hash.hpp
include/ncbi-tools++/algo/winmask/seq_masker_uset_simple.hpp
include/ncbi-tools++/algo/winmask/seq_masker_util.hpp
-include/ncbi-tools++/algo/winmask/seq_masker_window_ambig.hpp
include/ncbi-tools++/algo/winmask/seq_masker_window.hpp
-include/ncbi-tools++/algo/winmask/seq_masker_window_pattern_ambig.hpp
+include/ncbi-tools++/algo/winmask/seq_masker_window_ambig.hpp
include/ncbi-tools++/algo/winmask/seq_masker_window_pattern.hpp
+include/ncbi-tools++/algo/winmask/seq_masker_window_pattern_ambig.hpp
include/ncbi-tools++/algo/winmask/win_mask_config.hpp
include/ncbi-tools++/algo/winmask/win_mask_counts_converter.hpp
include/ncbi-tools++/algo/winmask/win_mask_dup_table.hpp
include/ncbi-tools++/algo/winmask/win_mask_gen_counts.hpp
include/ncbi-tools++/algo/winmask/win_mask_util.hpp
-include/ncbi-tools++/cgi/caf_encoded.hpp
include/ncbi-tools++/cgi/caf.hpp
+include/ncbi-tools++/cgi/caf_encoded.hpp
include/ncbi-tools++/cgi/caf_plain.hpp
-include/ncbi-tools++/cgi/cgiapp_cached.hpp
-include/ncbi-tools++/cgi/cgiapp.hpp
-include/ncbi-tools++/cgi/cgictx.hpp
include/ncbi-tools++/cgi/cgi_exception.hpp
include/ncbi-tools++/cgi/cgi_serial.hpp
include/ncbi-tools++/cgi/cgi_session.hpp
include/ncbi-tools++/cgi/cgi_util.hpp
+include/ncbi-tools++/cgi/cgiapp.hpp
+include/ncbi-tools++/cgi/cgiapp_cached.hpp
+include/ncbi-tools++/cgi/cgictx.hpp
include/ncbi-tools++/cgi/error_codes.hpp
include/ncbi-tools++/cgi/impl/cgi_entry_reader.hpp
include/ncbi-tools++/cgi/ncbicgi.hpp
@@ -245,12 +245,12 @@ include/ncbi-tools++/common/config/ncbiconf_xcode.h
include/ncbi-tools++/common/config/ncbiconf_xcode_site.h
include/ncbi-tools++/common/header_template.hpp
include/ncbi-tools++/common/metamodules_doxygen.h
-include/ncbi-tools++/common/ncbiconf_impl.h
include/ncbi-tools++/common/ncbi_export.h
include/ncbi-tools++/common/ncbi_package_ver.h
include/ncbi-tools++/common/ncbi_pch_impl.hpp
include/ncbi-tools++/common/ncbi_skew_guard.h
include/ncbi-tools++/common/ncbi_source_ver.h
+include/ncbi-tools++/common/ncbiconf_impl.h
include/ncbi-tools++/common/test_assert.h
include/ncbi-tools++/common/test_assert_impl.h
include/ncbi-tools++/common/test_data_path.h
@@ -267,15 +267,15 @@ include/ncbi-tools++/connect/impl/server_connection.hpp
include/ncbi-tools++/connect/impl/thread_pool_for_server.hpp
include/ncbi-tools++/connect/ncbi_base64.h
include/ncbi-tools++/connect/ncbi_buffer.h
-include/ncbi-tools++/connect/ncbi_connection.h
-include/ncbi-tools++/connect/ncbi_connector.h
include/ncbi-tools++/connect/ncbi_conn_exception.hpp
include/ncbi-tools++/connect/ncbi_conn_reader_writer.hpp
include/ncbi-tools++/connect/ncbi_conn_stream.hpp
include/ncbi-tools++/connect/ncbi_conn_test.hpp
+include/ncbi-tools++/connect/ncbi_connection.h
+include/ncbi-tools++/connect/ncbi_connector.h
include/ncbi-tools++/connect/ncbi_connutil.h
-include/ncbi-tools++/connect/ncbi_core_cxx.hpp
include/ncbi-tools++/connect/ncbi_core.h
+include/ncbi-tools++/connect/ncbi_core_cxx.hpp
include/ncbi-tools++/connect/ncbi_file_connector.h
include/ncbi-tools++/connect/ncbi_ftp_connector.h
include/ncbi-tools++/connect/ncbi_gnutls.h
@@ -285,17 +285,17 @@ include/ncbi-tools++/connect/ncbi_http_connector.h
include/ncbi-tools++/connect/ncbi_http_session.hpp
include/ncbi-tools++/connect/ncbi_memory_connector.h
include/ncbi-tools++/connect/ncbi_misc.hpp
-include/ncbi-tools++/connect/ncbi_namedpipe_connector.hpp
include/ncbi-tools++/connect/ncbi_namedpipe.hpp
-include/ncbi-tools++/connect/ncbi_pipe_connector.hpp
+include/ncbi-tools++/connect/ncbi_namedpipe_connector.hpp
include/ncbi-tools++/connect/ncbi_pipe.hpp
+include/ncbi-tools++/connect/ncbi_pipe_connector.hpp
include/ncbi-tools++/connect/ncbi_sendmail.h
include/ncbi-tools++/connect/ncbi_server_info.h
-include/ncbi-tools++/connect/ncbi_service_connector.h
include/ncbi-tools++/connect/ncbi_service.h
-include/ncbi-tools++/connect/ncbi_socket_connector.h
+include/ncbi-tools++/connect/ncbi_service_connector.h
include/ncbi-tools++/connect/ncbi_socket.h
include/ncbi-tools++/connect/ncbi_socket.hpp
+include/ncbi-tools++/connect/ncbi_socket_connector.h
include/ncbi-tools++/connect/ncbi_socket_unix.h
include/ncbi-tools++/connect/ncbi_socket_unix.hpp
include/ncbi-tools++/connect/ncbi_types.h
@@ -308,35 +308,35 @@ include/ncbi-tools++/connect/services/clparser.hpp
include/ncbi-tools++/connect/services/compound_id.hpp
include/ncbi-tools++/connect/services/error_codes.hpp
include/ncbi-tools++/connect/services/grid_app_version_info.hpp
-include/ncbi-tools++/connect/services/grid_client_app.hpp
include/ncbi-tools++/connect/services/grid_client.hpp
+include/ncbi-tools++/connect/services/grid_client_app.hpp
include/ncbi-tools++/connect/services/grid_globals.hpp
include/ncbi-tools++/connect/services/grid_rw_impl.hpp
-include/ncbi-tools++/connect/services/grid_worker_app.hpp
include/ncbi-tools++/connect/services/grid_worker.hpp
+include/ncbi-tools++/connect/services/grid_worker_app.hpp
include/ncbi-tools++/connect/services/json_over_uttp.hpp
include/ncbi-tools++/connect/services/named_parameters.hpp
include/ncbi-tools++/connect/services/netcache_admin.hpp
-include/ncbi-tools++/connect/services/netcache_api_expt.hpp
include/ncbi-tools++/connect/services/netcache_api.hpp
+include/ncbi-tools++/connect/services/netcache_api_expt.hpp
include/ncbi-tools++/connect/services/netcache_key.hpp
include/ncbi-tools++/connect/services/netcomponent.hpp
include/ncbi-tools++/connect/services/neticache_client.hpp
-include/ncbi-tools++/connect/services/netschedule_api_expt.hpp
include/ncbi-tools++/connect/services/netschedule_api.hpp
+include/ncbi-tools++/connect/services/netschedule_api_expt.hpp
include/ncbi-tools++/connect/services/netschedule_key.hpp
-include/ncbi-tools++/connect/services/netservice_api_expt.hpp
include/ncbi-tools++/connect/services/netservice_api.hpp
+include/ncbi-tools++/connect/services/netservice_api_expt.hpp
include/ncbi-tools++/connect/services/netservice_protocol_parser.hpp
-include/ncbi-tools++/connect/services/netstorage_admin.hpp
include/ncbi-tools++/connect/services/netstorage.hpp
+include/ncbi-tools++/connect/services/netstorage_admin.hpp
include/ncbi-tools++/connect/services/netstorage_impl.hpp
include/ncbi-tools++/connect/services/ns_client_factory.hpp
include/ncbi-tools++/connect/services/ns_job_serializer.hpp
include/ncbi-tools++/connect/services/ns_output_parser.hpp
include/ncbi-tools++/connect/services/remote_app.hpp
-include/ncbi-tools++/connect/services/srv_connections_expt.hpp
include/ncbi-tools++/connect/services/srv_connections.hpp
+include/ncbi-tools++/connect/services/srv_connections_expt.hpp
include/ncbi-tools++/connect/services/util.hpp
include/ncbi-tools++/connect/threaded_server.hpp
include/ncbi-tools++/corelib/blob_storage.hpp
@@ -356,11 +356,11 @@ include/ncbi-tools++/corelib/hash_map.hpp
include/ncbi-tools++/corelib/hash_set.hpp
include/ncbi-tools++/corelib/impl/ncbi_atomic_defs.h
include/ncbi-tools++/corelib/impl/ncbi_dbsvcmapper.hpp
-include/ncbi-tools++/corelib/impl/ncbierror_impl.hpp
include/ncbi-tools++/corelib/impl/ncbi_java.h
include/ncbi-tools++/corelib/impl/ncbi_os_mswin.h
include/ncbi-tools++/corelib/impl/ncbi_param_impl.hpp
include/ncbi-tools++/corelib/impl/ncbi_toolkit_impl.hpp
+include/ncbi-tools++/corelib/impl/ncbierror_impl.hpp
include/ncbi-tools++/corelib/impl/rwstreambuf.hpp
include/ncbi-tools++/corelib/impl/stringutf8_deprecated.hpp
include/ncbi-tools++/corelib/impl/stringutf8_deprecated.inl
@@ -368,17 +368,33 @@ include/ncbi-tools++/corelib/interprocess_lock.hpp
include/ncbi-tools++/corelib/metareg.hpp
include/ncbi-tools++/corelib/mswin_export.h
include/ncbi-tools++/corelib/mswin_no_popup.h
+include/ncbi-tools++/corelib/ncbi_autoinit.hpp
+include/ncbi-tools++/corelib/ncbi_base64.h
+include/ncbi-tools++/corelib/ncbi_bswap.hpp
+include/ncbi-tools++/corelib/ncbi_config.hpp
+include/ncbi-tools++/corelib/ncbi_cookies.hpp
+include/ncbi-tools++/corelib/ncbi_limits.h
+include/ncbi-tools++/corelib/ncbi_limits.hpp
+include/ncbi-tools++/corelib/ncbi_mask.hpp
+include/ncbi-tools++/corelib/ncbi_os_mswin.hpp
+include/ncbi-tools++/corelib/ncbi_os_unix.hpp
+include/ncbi-tools++/corelib/ncbi_param.hpp
+include/ncbi-tools++/corelib/ncbi_process.hpp
+include/ncbi-tools++/corelib/ncbi_safe_static.hpp
+include/ncbi-tools++/corelib/ncbi_signal.hpp
+include/ncbi-tools++/corelib/ncbi_stack.hpp
+include/ncbi-tools++/corelib/ncbi_strings.h
+include/ncbi-tools++/corelib/ncbi_system.hpp
+include/ncbi-tools++/corelib/ncbi_toolkit.hpp
+include/ncbi-tools++/corelib/ncbi_tree.hpp
+include/ncbi-tools++/corelib/ncbi_url.hpp
+include/ncbi-tools++/corelib/ncbi_xstr.hpp
include/ncbi-tools++/corelib/ncbiapp.hpp
include/ncbi-tools++/corelib/ncbiargs.hpp
include/ncbi-tools++/corelib/ncbiatomic.h
include/ncbi-tools++/corelib/ncbiatomic.hpp
-include/ncbi-tools++/corelib/ncbi_autoinit.hpp
-include/ncbi-tools++/corelib/ncbi_base64.h
-include/ncbi-tools++/corelib/ncbi_bswap.hpp
include/ncbi-tools++/corelib/ncbicfg.h
include/ncbi-tools++/corelib/ncbicntr.hpp
-include/ncbi-tools++/corelib/ncbi_config.hpp
-include/ncbi-tools++/corelib/ncbi_cookies.hpp
include/ncbi-tools++/corelib/ncbidbg.hpp
include/ncbi-tools++/corelib/ncbidiag.hpp
include/ncbi-tools++/corelib/ncbidiag.inl
@@ -389,38 +405,22 @@ include/ncbi-tools++/corelib/ncbiexec.hpp
include/ncbi-tools++/corelib/ncbiexpt.hpp
include/ncbi-tools++/corelib/ncbifile.hpp
include/ncbi-tools++/corelib/ncbifloat.h
-include/ncbi-tools++/corelib/ncbi_limits.h
-include/ncbi-tools++/corelib/ncbi_limits.hpp
-include/ncbi-tools++/corelib/ncbi_mask.hpp
include/ncbi-tools++/corelib/ncbimempool.hpp
include/ncbi-tools++/corelib/ncbimisc.hpp
include/ncbi-tools++/corelib/ncbimtx.hpp
include/ncbi-tools++/corelib/ncbimtx.inl
include/ncbi-tools++/corelib/ncbiobj.hpp
-include/ncbi-tools++/corelib/ncbi_os_mswin.hpp
-include/ncbi-tools++/corelib/ncbi_os_unix.hpp
-include/ncbi-tools++/corelib/ncbi_param.hpp
-include/ncbi-tools++/corelib/ncbi_process.hpp
include/ncbi-tools++/corelib/ncbireg.hpp
-include/ncbi-tools++/corelib/ncbi_safe_static.hpp
-include/ncbi-tools++/corelib/ncbi_signal.hpp
-include/ncbi-tools++/corelib/ncbi_stack.hpp
include/ncbi-tools++/corelib/ncbistd.hpp
include/ncbi-tools++/corelib/ncbistl.hpp
-include/ncbi-tools++/corelib/ncbistre.hpp
include/ncbi-tools++/corelib/ncbistr.hpp
-include/ncbi-tools++/corelib/ncbi_strings.h
include/ncbi-tools++/corelib/ncbistr_util.hpp
-include/ncbi-tools++/corelib/ncbi_system.hpp
-include/ncbi-tools++/corelib/ncbithr_conf.hpp
+include/ncbi-tools++/corelib/ncbistre.hpp
include/ncbi-tools++/corelib/ncbithr.hpp
+include/ncbi-tools++/corelib/ncbithr_conf.hpp
include/ncbi-tools++/corelib/ncbitime.hpp
-include/ncbi-tools++/corelib/ncbi_toolkit.hpp
-include/ncbi-tools++/corelib/ncbi_tree.hpp
include/ncbi-tools++/corelib/ncbitype.h
-include/ncbi-tools++/corelib/ncbi_url.hpp
include/ncbi-tools++/corelib/ncbiutil.hpp
-include/ncbi-tools++/corelib/ncbi_xstr.hpp
include/ncbi-tools++/corelib/obj_pool.hpp
include/ncbi-tools++/corelib/obj_store.hpp
include/ncbi-tools++/corelib/perf_log.hpp
@@ -458,12 +458,11 @@ include/ncbi-tools++/dbapi/driver/impl/dbapi_impl_context.hpp
include/ncbi-tools++/dbapi/driver/impl/dbapi_impl_result.hpp
include/ncbi-tools++/dbapi/driver/impl/handle_stack.hpp
include/ncbi-tools++/dbapi/driver/interfaces.hpp
-include/ncbi-tools++/dbapi/driver_mgr.hpp
include/ncbi-tools++/dbapi/driver/odbc/interfaces.hpp
include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/odbcinst.h
+include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/sql.h
include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/sqlext.h
include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/sqlfront.h
-include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/sql.h
include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/sqltypes.h
include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/sqlucode.h
include/ncbi-tools++/dbapi/driver/public.hpp
@@ -472,6 +471,7 @@ include/ncbi-tools++/dbapi/driver/util/blobstore.hpp
include/ncbi-tools++/dbapi/driver/util/numeric_convert.hpp
include/ncbi-tools++/dbapi/driver/util/parameters.hpp
include/ncbi-tools++/dbapi/driver/util/pointer_pot.hpp
+include/ncbi-tools++/dbapi/driver_mgr.hpp
include/ncbi-tools++/dbapi/error_codes.hpp
include/ncbi-tools++/dbapi/variant.hpp
include/ncbi-tools++/html/commentdiag.hpp
@@ -479,10 +479,10 @@ include/ncbi-tools++/html/components.hpp
include/ncbi-tools++/html/components.inl
include/ncbi-tools++/html/error_codes.hpp
include/ncbi-tools++/html/factory.hpp
-include/ncbi-tools++/html/html_exception.hpp
-include/ncbi-tools++/html/htmlhelper.hpp
include/ncbi-tools++/html/html.hpp
include/ncbi-tools++/html/html.inl
+include/ncbi-tools++/html/html_exception.hpp
+include/ncbi-tools++/html/htmlhelper.hpp
include/ncbi-tools++/html/indentstream.hpp
include/ncbi-tools++/html/node.hpp
include/ncbi-tools++/html/node.inl
@@ -491,2025 +491,2110 @@ include/ncbi-tools++/html/page.hpp
include/ncbi-tools++/html/pager.hpp
include/ncbi-tools++/html/selection.hpp
include/ncbi-tools++/html/writer_htmlenc.hpp
-include/ncbi-tools++/ncbiconf.h
-include/ncbi-tools++/ncbiconf_unix.h
include/ncbi-tools++/ncbi_pch.hpp
include/ncbi-tools++/ncbi_source_ver.h
-include/ncbi-tools++/objects/access/access__.hpp
+include/ncbi-tools++/ncbiconf.h
+include/ncbi-tools++/ncbiconf_unix.h
include/ncbi-tools++/objects/access/.cvsignore
-include/ncbi-tools++/objects/access/Link_set_.hpp
include/ncbi-tools++/objects/access/Link_set.hpp
+include/ncbi-tools++/objects/access/Link_set_.hpp
include/ncbi-tools++/objects/access/NCBI_Access_module.hpp
-include/ncbi-tools++/objects/biblio/Affil_.hpp
+include/ncbi-tools++/objects/access/access__.hpp
+include/ncbi-tools++/objects/biblio/.cvsignore
include/ncbi-tools++/objects/biblio/Affil.hpp
-include/ncbi-tools++/objects/biblio/ArticleId_.hpp
+include/ncbi-tools++/objects/biblio/Affil_.hpp
include/ncbi-tools++/objects/biblio/ArticleId.hpp
-include/ncbi-tools++/objects/biblio/ArticleIdSet_.hpp
include/ncbi-tools++/objects/biblio/ArticleIdSet.hpp
-include/ncbi-tools++/objects/biblio/Auth_list_.hpp
+include/ncbi-tools++/objects/biblio/ArticleIdSet_.hpp
+include/ncbi-tools++/objects/biblio/ArticleId_.hpp
include/ncbi-tools++/objects/biblio/Auth_list.hpp
-include/ncbi-tools++/objects/biblio/Author_.hpp
+include/ncbi-tools++/objects/biblio/Auth_list_.hpp
include/ncbi-tools++/objects/biblio/Author.hpp
-include/ncbi-tools++/objects/biblio/biblio__.hpp
-include/ncbi-tools++/objects/biblio/biblio_macros.hpp
-include/ncbi-tools++/objects/biblio/Cit_art_.hpp
+include/ncbi-tools++/objects/biblio/Author_.hpp
+include/ncbi-tools++/objects/biblio/CitRetract.hpp
+include/ncbi-tools++/objects/biblio/CitRetract_.hpp
include/ncbi-tools++/objects/biblio/Cit_art.hpp
-include/ncbi-tools++/objects/biblio/citation_base.hpp
-include/ncbi-tools++/objects/biblio/Cit_book_.hpp
+include/ncbi-tools++/objects/biblio/Cit_art_.hpp
include/ncbi-tools++/objects/biblio/Cit_book.hpp
-include/ncbi-tools++/objects/biblio/Cit_gen_.hpp
+include/ncbi-tools++/objects/biblio/Cit_book_.hpp
include/ncbi-tools++/objects/biblio/Cit_gen.hpp
-include/ncbi-tools++/objects/biblio/Cit_jour_.hpp
+include/ncbi-tools++/objects/biblio/Cit_gen_.hpp
include/ncbi-tools++/objects/biblio/Cit_jour.hpp
-include/ncbi-tools++/objects/biblio/Cit_let_.hpp
+include/ncbi-tools++/objects/biblio/Cit_jour_.hpp
include/ncbi-tools++/objects/biblio/Cit_let.hpp
-include/ncbi-tools++/objects/biblio/Cit_pat_.hpp
+include/ncbi-tools++/objects/biblio/Cit_let_.hpp
include/ncbi-tools++/objects/biblio/Cit_pat.hpp
-include/ncbi-tools++/objects/biblio/Cit_proc_.hpp
+include/ncbi-tools++/objects/biblio/Cit_pat_.hpp
include/ncbi-tools++/objects/biblio/Cit_proc.hpp
-include/ncbi-tools++/objects/biblio/CitRetract_.hpp
-include/ncbi-tools++/objects/biblio/CitRetract.hpp
-include/ncbi-tools++/objects/biblio/Cit_sub_.hpp
+include/ncbi-tools++/objects/biblio/Cit_proc_.hpp
include/ncbi-tools++/objects/biblio/Cit_sub.hpp
-include/ncbi-tools++/objects/biblio/.cvsignore
-include/ncbi-tools++/objects/biblio/DOI_.hpp
+include/ncbi-tools++/objects/biblio/Cit_sub_.hpp
include/ncbi-tools++/objects/biblio/DOI.hpp
-include/ncbi-tools++/objects/biblio/Id_pat_.hpp
+include/ncbi-tools++/objects/biblio/DOI_.hpp
include/ncbi-tools++/objects/biblio/Id_pat.hpp
-include/ncbi-tools++/objects/biblio/Imprint_.hpp
+include/ncbi-tools++/objects/biblio/Id_pat_.hpp
include/ncbi-tools++/objects/biblio/Imprint.hpp
-include/ncbi-tools++/objects/biblio/MedlineUID_.hpp
+include/ncbi-tools++/objects/biblio/Imprint_.hpp
include/ncbi-tools++/objects/biblio/MedlineUID.hpp
-include/ncbi-tools++/objects/biblio/Meeting_.hpp
+include/ncbi-tools++/objects/biblio/MedlineUID_.hpp
include/ncbi-tools++/objects/biblio/Meeting.hpp
+include/ncbi-tools++/objects/biblio/Meeting_.hpp
include/ncbi-tools++/objects/biblio/NCBI_Biblio_module.hpp
-include/ncbi-tools++/objects/biblio/Patent_priority_.hpp
-include/ncbi-tools++/objects/biblio/Patent_priority.hpp
-include/ncbi-tools++/objects/biblio/PII_.hpp
include/ncbi-tools++/objects/biblio/PII.hpp
-include/ncbi-tools++/objects/biblio/PmcID_.hpp
+include/ncbi-tools++/objects/biblio/PII_.hpp
+include/ncbi-tools++/objects/biblio/Patent_priority.hpp
+include/ncbi-tools++/objects/biblio/Patent_priority_.hpp
+include/ncbi-tools++/objects/biblio/PmPid.hpp
+include/ncbi-tools++/objects/biblio/PmPid_.hpp
include/ncbi-tools++/objects/biblio/PmcID.hpp
-include/ncbi-tools++/objects/biblio/PmcPid_.hpp
+include/ncbi-tools++/objects/biblio/PmcID_.hpp
include/ncbi-tools++/objects/biblio/PmcPid.hpp
-include/ncbi-tools++/objects/biblio/PmPid_.hpp
-include/ncbi-tools++/objects/biblio/PmPid.hpp
-include/ncbi-tools++/objects/biblio/PubMedId_.hpp
+include/ncbi-tools++/objects/biblio/PmcPid_.hpp
include/ncbi-tools++/objects/biblio/PubMedId.hpp
-include/ncbi-tools++/objects/biblio/PubStatusDate_.hpp
+include/ncbi-tools++/objects/biblio/PubMedId_.hpp
+include/ncbi-tools++/objects/biblio/PubStatus.hpp
include/ncbi-tools++/objects/biblio/PubStatusDate.hpp
-include/ncbi-tools++/objects/biblio/PubStatusDateSet_.hpp
include/ncbi-tools++/objects/biblio/PubStatusDateSet.hpp
+include/ncbi-tools++/objects/biblio/PubStatusDateSet_.hpp
+include/ncbi-tools++/objects/biblio/PubStatusDate_.hpp
include/ncbi-tools++/objects/biblio/PubStatus_.hpp
-include/ncbi-tools++/objects/biblio/PubStatus.hpp
-include/ncbi-tools++/objects/biblio/Title_.hpp
include/ncbi-tools++/objects/biblio/Title.hpp
-include/ncbi-tools++/objects/biotree/BioTreeContainer_.hpp
-include/ncbi-tools++/objects/biotree/BioTreeContainer.hpp
-include/ncbi-tools++/objects/biotree/biotree__.hpp
+include/ncbi-tools++/objects/biblio/Title_.hpp
+include/ncbi-tools++/objects/biblio/biblio__.hpp
+include/ncbi-tools++/objects/biblio/biblio_macros.hpp
+include/ncbi-tools++/objects/biblio/citation_base.hpp
include/ncbi-tools++/objects/biotree/.cvsignore
-include/ncbi-tools++/objects/biotree/DistanceMatrix_.hpp
+include/ncbi-tools++/objects/biotree/BioTreeContainer.hpp
+include/ncbi-tools++/objects/biotree/BioTreeContainer_.hpp
include/ncbi-tools++/objects/biotree/DistanceMatrix.hpp
-include/ncbi-tools++/objects/biotree/FeatureDescr_.hpp
+include/ncbi-tools++/objects/biotree/DistanceMatrix_.hpp
include/ncbi-tools++/objects/biotree/FeatureDescr.hpp
-include/ncbi-tools++/objects/biotree/FeatureDictSet_.hpp
+include/ncbi-tools++/objects/biotree/FeatureDescr_.hpp
include/ncbi-tools++/objects/biotree/FeatureDictSet.hpp
+include/ncbi-tools++/objects/biotree/FeatureDictSet_.hpp
include/ncbi-tools++/objects/biotree/NCBI_BioTree_module.hpp
-include/ncbi-tools++/objects/biotree/NodeFeature_.hpp
+include/ncbi-tools++/objects/biotree/Node.hpp
include/ncbi-tools++/objects/biotree/NodeFeature.hpp
-include/ncbi-tools++/objects/biotree/NodeFeatureSet_.hpp
include/ncbi-tools++/objects/biotree/NodeFeatureSet.hpp
-include/ncbi-tools++/objects/biotree/Node_.hpp
-include/ncbi-tools++/objects/biotree/Node.hpp
-include/ncbi-tools++/objects/biotree/NodeSet_.hpp
+include/ncbi-tools++/objects/biotree/NodeFeatureSet_.hpp
+include/ncbi-tools++/objects/biotree/NodeFeature_.hpp
include/ncbi-tools++/objects/biotree/NodeSet.hpp
-include/ncbi-tools++/objects/blast/Bla_com_opt_db_res_by_orga_.hpp
+include/ncbi-tools++/objects/biotree/NodeSet_.hpp
+include/ncbi-tools++/objects/biotree/Node_.hpp
+include/ncbi-tools++/objects/biotree/biotree__.hpp
+include/ncbi-tools++/objects/blast/.cvsignore
+include/ncbi-tools++/objects/blast/.cvsignore.extra
include/ncbi-tools++/objects/blast/Bla_com_opt_db_res_by_orga.hpp
-include/ncbi-tools++/objects/blast/Blas_comm_opti_disco_megab_.hpp
+include/ncbi-tools++/objects/blast/Bla_com_opt_db_res_by_orga_.hpp
include/ncbi-tools++/objects/blast/Blas_comm_opti_disco_megab.hpp
-include/ncbi-tools++/objects/blast/Blas_comm_opti_nucle_query_.hpp
+include/ncbi-tools++/objects/blast/Blas_comm_opti_disco_megab_.hpp
include/ncbi-tools++/objects/blast/Blas_comm_opti_nucle_query.hpp
-include/ncbi-tools++/objects/blast/Blas_comm_opti_query_filte_.hpp
+include/ncbi-tools++/objects/blast/Blas_comm_opti_nucle_query_.hpp
include/ncbi-tools++/objects/blast/Blas_comm_opti_query_filte.hpp
-include/ncbi-tools++/objects/blast/Blas_comm_opti_repea_filte_.hpp
+include/ncbi-tools++/objects/blast/Blas_comm_opti_query_filte_.hpp
include/ncbi-tools++/objects/blast/Blas_comm_opti_repea_filte.hpp
-include/ncbi-tools++/objects/blast/Blas_get_searc_resul_reply_.hpp
+include/ncbi-tools++/objects/blast/Blas_comm_opti_repea_filte_.hpp
include/ncbi-tools++/objects/blast/Blas_get_searc_resul_reply.hpp
-include/ncbi-tools++/objects/blast/Blas_get_searc_resul_reque_.hpp
+include/ncbi-tools++/objects/blast/Blas_get_searc_resul_reply_.hpp
include/ncbi-tools++/objects/blast/Blas_get_searc_resul_reque.hpp
-include/ncbi-tools++/objects/blast/Blas_get_searc_statu_reply_.hpp
+include/ncbi-tools++/objects/blast/Blas_get_searc_resul_reque_.hpp
include/ncbi-tools++/objects/blast/Blas_get_searc_statu_reply.hpp
-include/ncbi-tools++/objects/blast/Blas_get_searc_statu_reque_.hpp
+include/ncbi-tools++/objects/blast/Blas_get_searc_statu_reply_.hpp
include/ncbi-tools++/objects/blast/Blas_get_searc_statu_reque.hpp
-include/ncbi-tools++/objects/blast/Blas_get_searc_strat_reply_.hpp
+include/ncbi-tools++/objects/blast/Blas_get_searc_statu_reque_.hpp
include/ncbi-tools++/objects/blast/Blas_get_searc_strat_reply.hpp
-include/ncbi-tools++/objects/blast/Blas_get_searc_strat_reque_.hpp
+include/ncbi-tools++/objects/blast/Blas_get_searc_strat_reply_.hpp
include/ncbi-tools++/objects/blast/Blas_get_searc_strat_reque.hpp
-include/ncbi-tools++/objects/blast/Blas_get_windo_taxid_reply_.hpp
+include/ncbi-tools++/objects/blast/Blas_get_searc_strat_reque_.hpp
include/ncbi-tools++/objects/blast/Blas_get_windo_taxid_reply.hpp
-include/ncbi-tools++/objects/blast/Blas_queu_searc_reque_lite_.hpp
+include/ncbi-tools++/objects/blast/Blas_get_windo_taxid_reply_.hpp
include/ncbi-tools++/objects/blast/Blas_queu_searc_reque_lite.hpp
-include/ncbi-tools++/objects/blast/Blast4_alignment_for_query_.hpp
+include/ncbi-tools++/objects/blast/Blas_queu_searc_reque_lite_.hpp
include/ncbi-tools++/objects/blast/Blast4_alignment_for_query.hpp
-include/ncbi-tools++/objects/blast/Blast4_archive_.hpp
+include/ncbi-tools++/objects/blast/Blast4_alignment_for_query_.hpp
include/ncbi-tools++/objects/blast/Blast4_archive.hpp
-include/ncbi-tools++/objects/blast/Blast4_common_options_.hpp
+include/ncbi-tools++/objects/blast/Blast4_archive_.hpp
include/ncbi-tools++/objects/blast/Blast4_common_options.hpp
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include/ncbi-tools++/objects/blast/Blast4_database.hpp
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include/ncbi-tools++/objects/blast/Blast4_error_code.hpp
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-include/ncbi-tools++/objects/seqfeat/Gene_ref_.hpp
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include/ncbi-tools++/objects/seqfeat/Gene_ref.hpp
-include/ncbi-tools++/objects/seqfeat/Genetic_code_.hpp
+include/ncbi-tools++/objects/seqfeat/Gene_ref_.hpp
include/ncbi-tools++/objects/seqfeat/Genetic_code.hpp
-include/ncbi-tools++/objects/seqfeat/Genetic_code_table_.hpp
+include/ncbi-tools++/objects/seqfeat/Genetic_code_.hpp
include/ncbi-tools++/objects/seqfeat/Genetic_code_table.hpp
-include/ncbi-tools++/objects/seqfeat/Imp_feat_.hpp
+include/ncbi-tools++/objects/seqfeat/Genetic_code_table_.hpp
+include/ncbi-tools++/objects/seqfeat/ISeq_feat.hpp
include/ncbi-tools++/objects/seqfeat/Imp_feat.hpp
-include/ncbi-tools++/objects/seqfeat/InferenceSupport_.hpp
+include/ncbi-tools++/objects/seqfeat/Imp_feat_.hpp
include/ncbi-tools++/objects/seqfeat/InferenceSupport.hpp
-include/ncbi-tools++/objects/seqfeat/ISeq_feat.hpp
-include/ncbi-tools++/objects/seqfeat/ModelEvidenceItem_.hpp
+include/ncbi-tools++/objects/seqfeat/InferenceSupport_.hpp
include/ncbi-tools++/objects/seqfeat/ModelEvidenceItem.hpp
-include/ncbi-tools++/objects/seqfeat/ModelEvidenceSupport_.hpp
+include/ncbi-tools++/objects/seqfeat/ModelEvidenceItem_.hpp
include/ncbi-tools++/objects/seqfeat/ModelEvidenceSupport.hpp
-include/ncbi-tools++/objects/seqfeat/MultiOrgName_.hpp
+include/ncbi-tools++/objects/seqfeat/ModelEvidenceSupport_.hpp
include/ncbi-tools++/objects/seqfeat/MultiOrgName.hpp
+include/ncbi-tools++/objects/seqfeat/MultiOrgName_.hpp
include/ncbi-tools++/objects/seqfeat/NCBI_BioSource_module.hpp
include/ncbi-tools++/objects/seqfeat/NCBI_Gene_module.hpp
include/ncbi-tools++/objects/seqfeat/NCBI_Organism_module.hpp
@@ -2519,528 +2604,443 @@ include/ncbi-tools++/objects/seqfeat/NCBI_Rsite_module.hpp
include/ncbi-tools++/objects/seqfeat/NCBI_Seqfeat_module.hpp
include/ncbi-tools++/objects/seqfeat/NCBI_TxInit_module.hpp
include/ncbi-tools++/objects/seqfeat/NCBI_Variation_module.hpp
-include/ncbi-tools++/objects/seqfeat/OrgMod_.hpp
include/ncbi-tools++/objects/seqfeat/OrgMod.hpp
-include/ncbi-tools++/objects/seqfeat/OrgName_.hpp
+include/ncbi-tools++/objects/seqfeat/OrgMod_.hpp
include/ncbi-tools++/objects/seqfeat/OrgName.hpp
-include/ncbi-tools++/objects/seqfeat/Org_ref_.hpp
+include/ncbi-tools++/objects/seqfeat/OrgName_.hpp
include/ncbi-tools++/objects/seqfeat/Org_ref.hpp
-include/ncbi-tools++/objects/seqfeat/PartialOrgName_.hpp
-include/ncbi-tools++/objects/seqfeat/PartialOrgName.hpp
-include/ncbi-tools++/objects/seqfeat/PCRPrimer_.hpp
+include/ncbi-tools++/objects/seqfeat/Org_ref_.hpp
include/ncbi-tools++/objects/seqfeat/PCRPrimer.hpp
-include/ncbi-tools++/objects/seqfeat/PCRPrimerName_.hpp
include/ncbi-tools++/objects/seqfeat/PCRPrimerName.hpp
-include/ncbi-tools++/objects/seqfeat/PCRPrimerSeq_.hpp
+include/ncbi-tools++/objects/seqfeat/PCRPrimerName_.hpp
include/ncbi-tools++/objects/seqfeat/PCRPrimerSeq.hpp
-include/ncbi-tools++/objects/seqfeat/PCRPrimerSet_.hpp
+include/ncbi-tools++/objects/seqfeat/PCRPrimerSeq_.hpp
include/ncbi-tools++/objects/seqfeat/PCRPrimerSet.hpp
-include/ncbi-tools++/objects/seqfeat/PCRReaction_.hpp
+include/ncbi-tools++/objects/seqfeat/PCRPrimerSet_.hpp
+include/ncbi-tools++/objects/seqfeat/PCRPrimer_.hpp
include/ncbi-tools++/objects/seqfeat/PCRReaction.hpp
-include/ncbi-tools++/objects/seqfeat/PCRReactionSet_.hpp
include/ncbi-tools++/objects/seqfeat/PCRReactionSet.hpp
-include/ncbi-tools++/objects/seqfeat/Phenotype_.hpp
+include/ncbi-tools++/objects/seqfeat/PCRReactionSet_.hpp
+include/ncbi-tools++/objects/seqfeat/PCRReaction_.hpp
+include/ncbi-tools++/objects/seqfeat/PartialOrgName.hpp
+include/ncbi-tools++/objects/seqfeat/PartialOrgName_.hpp
include/ncbi-tools++/objects/seqfeat/Phenotype.hpp
-include/ncbi-tools++/objects/seqfeat/Population_data_.hpp
+include/ncbi-tools++/objects/seqfeat/Phenotype_.hpp
include/ncbi-tools++/objects/seqfeat/Population_data.hpp
-include/ncbi-tools++/objects/seqfeat/Program_id_.hpp
+include/ncbi-tools++/objects/seqfeat/Population_data_.hpp
include/ncbi-tools++/objects/seqfeat/Program_id.hpp
-include/ncbi-tools++/objects/seqfeat/Prot_ref_.hpp
+include/ncbi-tools++/objects/seqfeat/Program_id_.hpp
include/ncbi-tools++/objects/seqfeat/Prot_ref.hpp
-include/ncbi-tools++/objects/seqfeat/RNA_gen_.hpp
+include/ncbi-tools++/objects/seqfeat/Prot_ref_.hpp
include/ncbi-tools++/objects/seqfeat/RNA_gen.hpp
-include/ncbi-tools++/objects/seqfeat/RNA_qual_.hpp
+include/ncbi-tools++/objects/seqfeat/RNA_gen_.hpp
include/ncbi-tools++/objects/seqfeat/RNA_qual.hpp
-include/ncbi-tools++/objects/seqfeat/RNA_qual_set_.hpp
+include/ncbi-tools++/objects/seqfeat/RNA_qual_.hpp
include/ncbi-tools++/objects/seqfeat/RNA_qual_set.hpp
-include/ncbi-tools++/objects/seqfeat/RNA_ref_.hpp
+include/ncbi-tools++/objects/seqfeat/RNA_qual_set_.hpp
include/ncbi-tools++/objects/seqfeat/RNA_ref.hpp
-include/ncbi-tools++/objects/seqfeat/Rsite_ref_.hpp
+include/ncbi-tools++/objects/seqfeat/RNA_ref_.hpp
include/ncbi-tools++/objects/seqfeat/Rsite_ref.hpp
-include/ncbi-tools++/objects/seqfeat/SeqFeatData_.hpp
+include/ncbi-tools++/objects/seqfeat/Rsite_ref_.hpp
include/ncbi-tools++/objects/seqfeat/SeqFeatData.hpp
-include/ncbi-tools++/objects/seqfeat/seqfeat__.hpp
-include/ncbi-tools++/objects/seqfeat/Seq_feat_.hpp
-include/ncbi-tools++/objects/seqfeat/Seq_feat.hpp
-include/ncbi-tools++/objects/seqfeat/seqfeat_macros.hpp
-include/ncbi-tools++/objects/seqfeat/SeqFeatSupport_.hpp
+include/ncbi-tools++/objects/seqfeat/SeqFeatData_.hpp
include/ncbi-tools++/objects/seqfeat/SeqFeatSupport.hpp
-include/ncbi-tools++/objects/seqfeat/SeqFeatXref_.hpp
+include/ncbi-tools++/objects/seqfeat/SeqFeatSupport_.hpp
include/ncbi-tools++/objects/seqfeat/SeqFeatXref.hpp
-include/ncbi-tools++/objects/seqfeat/SubSource_.hpp
+include/ncbi-tools++/objects/seqfeat/SeqFeatXref_.hpp
+include/ncbi-tools++/objects/seqfeat/Seq_feat.hpp
+include/ncbi-tools++/objects/seqfeat/Seq_feat_.hpp
include/ncbi-tools++/objects/seqfeat/SubSource.hpp
-include/ncbi-tools++/objects/seqfeat/TaxElement_.hpp
+include/ncbi-tools++/objects/seqfeat/SubSource_.hpp
include/ncbi-tools++/objects/seqfeat/TaxElement.hpp
-include/ncbi-tools++/objects/seqfeat/Trna_ext_.hpp
+include/ncbi-tools++/objects/seqfeat/TaxElement_.hpp
include/ncbi-tools++/objects/seqfeat/Trna_ext.hpp
-include/ncbi-tools++/objects/seqfeat/Tx_evidence_.hpp
+include/ncbi-tools++/objects/seqfeat/Trna_ext_.hpp
include/ncbi-tools++/objects/seqfeat/Tx_evidence.hpp
-include/ncbi-tools++/objects/seqfeat/Txinit_.hpp
+include/ncbi-tools++/objects/seqfeat/Tx_evidence_.hpp
include/ncbi-tools++/objects/seqfeat/Txinit.hpp
-include/ncbi-tools++/objects/seqfeat/VariantProperties_.hpp
+include/ncbi-tools++/objects/seqfeat/Txinit_.hpp
include/ncbi-tools++/objects/seqfeat/VariantProperties.hpp
-include/ncbi-tools++/objects/seqfeat/Variation_inst_.hpp
+include/ncbi-tools++/objects/seqfeat/VariantProperties_.hpp
include/ncbi-tools++/objects/seqfeat/Variation_inst.hpp
-include/ncbi-tools++/objects/seqfeat/Variation_ref_.hpp
+include/ncbi-tools++/objects/seqfeat/Variation_inst_.hpp
include/ncbi-tools++/objects/seqfeat/Variation_ref.hpp
-include/ncbi-tools++/objects/seq/GIBB_method_.hpp
-include/ncbi-tools++/objects/seq/GIBB_method.hpp
-include/ncbi-tools++/objects/seq/GIBB_mod_.hpp
-include/ncbi-tools++/objects/seq/GIBB_mod.hpp
-include/ncbi-tools++/objects/seq/GIBB_mol_.hpp
-include/ncbi-tools++/objects/seq/GIBB_mol.hpp
-include/ncbi-tools++/objects/seq/Heterogen_.hpp
-include/ncbi-tools++/objects/seq/Heterogen.hpp
-include/ncbi-tools++/objects/seq/IUPACaa_.hpp
-include/ncbi-tools++/objects/seq/IUPACaa.hpp
-include/ncbi-tools++/objects/seq/IUPACna_.hpp
-include/ncbi-tools++/objects/seq/IUPACna.hpp
-include/ncbi-tools++/objects/seq/Linkage_evidence_.hpp
-include/ncbi-tools++/objects/seq/Linkage_evidence.hpp
+include/ncbi-tools++/objects/seqfeat/Variation_ref_.hpp
+include/ncbi-tools++/objects/seqfeat/seqfeat__.hpp
+include/ncbi-tools++/objects/seqfeat/seqfeat_macros.hpp
include/ncbi-tools++/objects/seqloc/.cvsignore
-include/ncbi-tools++/objects/seqloc/Giimport_id_.hpp
include/ncbi-tools++/objects/seqloc/Giimport_id.hpp
-include/ncbi-tools++/objects/seqloc/Na_strand_.hpp
-include/ncbi-tools++/objects/seqloc/Na_strand.hpp
+include/ncbi-tools++/objects/seqloc/Giimport_id_.hpp
include/ncbi-tools++/objects/seqloc/NCBI_Seqloc_module.hpp
-include/ncbi-tools++/objects/seqloc/Packed_seqint_.hpp
+include/ncbi-tools++/objects/seqloc/Na_strand.hpp
+include/ncbi-tools++/objects/seqloc/Na_strand_.hpp
+include/ncbi-tools++/objects/seqloc/PDB_mol_id.hpp
+include/ncbi-tools++/objects/seqloc/PDB_mol_id_.hpp
+include/ncbi-tools++/objects/seqloc/PDB_seq_id.hpp
+include/ncbi-tools++/objects/seqloc/PDB_seq_id_.hpp
include/ncbi-tools++/objects/seqloc/Packed_seqint.hpp
-include/ncbi-tools++/objects/seqloc/Packed_seqpnt_.hpp
+include/ncbi-tools++/objects/seqloc/Packed_seqint_.hpp
include/ncbi-tools++/objects/seqloc/Packed_seqpnt.hpp
-include/ncbi-tools++/objects/seqloc/Patent_seq_id_.hpp
+include/ncbi-tools++/objects/seqloc/Packed_seqpnt_.hpp
include/ncbi-tools++/objects/seqloc/Patent_seq_id.hpp
-include/ncbi-tools++/objects/seqloc/PDB_mol_id_.hpp
-include/ncbi-tools++/objects/seqloc/PDB_mol_id.hpp
-include/ncbi-tools++/objects/seqloc/PDB_seq_id_.hpp
-include/ncbi-tools++/objects/seqloc/PDB_seq_id.hpp
-include/ncbi-tools++/objects/seqloc/Seq_bond_.hpp
+include/ncbi-tools++/objects/seqloc/Patent_seq_id_.hpp
include/ncbi-tools++/objects/seqloc/Seq_bond.hpp
-include/ncbi-tools++/objects/seqloc/Seq_id_.hpp
+include/ncbi-tools++/objects/seqloc/Seq_bond_.hpp
include/ncbi-tools++/objects/seqloc/Seq_id.hpp
-include/ncbi-tools++/objects/seqloc/Seq_id_set_.hpp
+include/ncbi-tools++/objects/seqloc/Seq_id_.hpp
include/ncbi-tools++/objects/seqloc/Seq_id_set.hpp
-include/ncbi-tools++/objects/seqloc/Seq_interval_.hpp
+include/ncbi-tools++/objects/seqloc/Seq_id_set_.hpp
include/ncbi-tools++/objects/seqloc/Seq_interval.hpp
-include/ncbi-tools++/objects/seqloc/Seq_loc_equiv_.hpp
-include/ncbi-tools++/objects/seqloc/Seq_loc_equiv.hpp
-include/ncbi-tools++/objects/seqloc/seqloc__.hpp
-include/ncbi-tools++/objects/seqloc/Seq_loc_.hpp
+include/ncbi-tools++/objects/seqloc/Seq_interval_.hpp
include/ncbi-tools++/objects/seqloc/Seq_loc.hpp
-include/ncbi-tools++/objects/seqloc/seqloc_macros.hpp
-include/ncbi-tools++/objects/seqloc/Seq_loc_mix_.hpp
+include/ncbi-tools++/objects/seqloc/Seq_loc_.hpp
+include/ncbi-tools++/objects/seqloc/Seq_loc_equiv.hpp
+include/ncbi-tools++/objects/seqloc/Seq_loc_equiv_.hpp
include/ncbi-tools++/objects/seqloc/Seq_loc_mix.hpp
-include/ncbi-tools++/objects/seqloc/Seq_point_.hpp
+include/ncbi-tools++/objects/seqloc/Seq_loc_mix_.hpp
include/ncbi-tools++/objects/seqloc/Seq_point.hpp
-include/ncbi-tools++/objects/seqloc/Textseq_id_.hpp
+include/ncbi-tools++/objects/seqloc/Seq_point_.hpp
include/ncbi-tools++/objects/seqloc/Textseq_id.hpp
-include/ncbi-tools++/objects/seq/Map_ext_.hpp
-include/ncbi-tools++/objects/seq/Map_ext.hpp
-include/ncbi-tools++/objects/seq/MolInfo_.hpp
-include/ncbi-tools++/objects/seq/MolInfo.hpp
-include/ncbi-tools++/objects/seq/NCBI2na_.hpp
-include/ncbi-tools++/objects/seq/NCBI2na.hpp
-include/ncbi-tools++/objects/seq/NCBI4na_.hpp
-include/ncbi-tools++/objects/seq/NCBI4na.hpp
-include/ncbi-tools++/objects/seq/NCBI8aa_.hpp
-include/ncbi-tools++/objects/seq/NCBI8aa.hpp
-include/ncbi-tools++/objects/seq/NCBI8na_.hpp
-include/ncbi-tools++/objects/seq/NCBI8na.hpp
-include/ncbi-tools++/objects/seq/NCBIeaa_.hpp
-include/ncbi-tools++/objects/seq/NCBIeaa.hpp
-include/ncbi-tools++/objects/seq/NCBIpaa_.hpp
-include/ncbi-tools++/objects/seq/NCBIpaa.hpp
-include/ncbi-tools++/objects/seq/NCBIpna_.hpp
-include/ncbi-tools++/objects/seq/NCBIpna.hpp
-include/ncbi-tools++/objects/seq/NCBI_Sequence_module.hpp
-include/ncbi-tools++/objects/seq/NCBIstdaa_.hpp
-include/ncbi-tools++/objects/seq/NCBIstdaa.hpp
-include/ncbi-tools++/objects/seq/Numbering_.hpp
-include/ncbi-tools++/objects/seq/Numbering.hpp
-include/ncbi-tools++/objects/seq/Num_cont_.hpp
-include/ncbi-tools++/objects/seq/Num_cont.hpp
-include/ncbi-tools++/objects/seq/Num_enum_.hpp
-include/ncbi-tools++/objects/seq/Num_enum.hpp
-include/ncbi-tools++/objects/seq/Num_real_.hpp
-include/ncbi-tools++/objects/seq/Num_real.hpp
-include/ncbi-tools++/objects/seq/Num_ref_.hpp
-include/ncbi-tools++/objects/seq/Num_ref.hpp
-include/ncbi-tools++/objects/seq/Pubdesc_.hpp
-include/ncbi-tools++/objects/seq/Pubdesc.hpp
-include/ncbi-tools++/objects/seq/Ref_ext_.hpp
-include/ncbi-tools++/objects/seq/Ref_ext.hpp
-include/ncbi-tools++/objects/seqres/Byte_graph_.hpp
-include/ncbi-tools++/objects/seqres/Byte_graph.hpp
+include/ncbi-tools++/objects/seqloc/Textseq_id_.hpp
+include/ncbi-tools++/objects/seqloc/seqloc__.hpp
+include/ncbi-tools++/objects/seqloc/seqloc_macros.hpp
include/ncbi-tools++/objects/seqres/.cvsignore
-include/ncbi-tools++/objects/seqres/Int_graph_.hpp
+include/ncbi-tools++/objects/seqres/Byte_graph.hpp
+include/ncbi-tools++/objects/seqres/Byte_graph_.hpp
include/ncbi-tools++/objects/seqres/Int_graph.hpp
+include/ncbi-tools++/objects/seqres/Int_graph_.hpp
include/ncbi-tools++/objects/seqres/NCBI_Seqres_module.hpp
-include/ncbi-tools++/objects/seqres/Real_graph_.hpp
include/ncbi-tools++/objects/seqres/Real_graph.hpp
-include/ncbi-tools++/objects/seqres/Seq_graph_.hpp
+include/ncbi-tools++/objects/seqres/Real_graph_.hpp
include/ncbi-tools++/objects/seqres/Seq_graph.hpp
+include/ncbi-tools++/objects/seqres/Seq_graph_.hpp
include/ncbi-tools++/objects/seqres/seqres__.hpp
-include/ncbi-tools++/objects/seq/Seg_ext_.hpp
-include/ncbi-tools++/objects/seq/Seg_ext.hpp
-include/ncbi-tools++/objects/seq/seq_align_mapper_base.hpp
-include/ncbi-tools++/objects/seq/Seq_annot_.hpp
-include/ncbi-tools++/objects/seq/Seq_annot.hpp
-include/ncbi-tools++/objects/seq/Seq_data_.hpp
-include/ncbi-tools++/objects/seq/Seq_data.hpp
-include/ncbi-tools++/objects/seq/Seqdesc_.hpp
-include/ncbi-tools++/objects/seq/Seqdesc.hpp
-include/ncbi-tools++/objects/seq/Seq_descr_.hpp
-include/ncbi-tools++/objects/seq/Seq_descr.hpp
-include/ncbi-tools++/objects/seq/Seq_ext_.hpp
-include/ncbi-tools++/objects/seq/Seq_ext.hpp
-include/ncbi-tools++/objects/seq/Seq_gap_.hpp
-include/ncbi-tools++/objects/seq/Seq_gap.hpp
-include/ncbi-tools++/objects/seq/Seq_hist_.hpp
-include/ncbi-tools++/objects/seq/Seq_hist.hpp
-include/ncbi-tools++/objects/seq/Seq_hist_rec_.hpp
-include/ncbi-tools++/objects/seq/Seq_hist_rec.hpp
-include/ncbi-tools++/objects/seq/seq__.hpp
-include/ncbi-tools++/objects/seq/seq_id_handle.hpp
-include/ncbi-tools++/objects/seq/seq_id_mapper.hpp
-include/ncbi-tools++/objects/seq/Seq_inst_.hpp
-include/ncbi-tools++/objects/seq/Seq_inst.hpp
-include/ncbi-tools++/objects/seq/Seq_literal_.hpp
-include/ncbi-tools++/objects/seq/Seq_literal.hpp
-include/ncbi-tools++/objects/seq/seq_loc_from_string.hpp
-include/ncbi-tools++/objects/seq/seqlocinfo.hpp
-include/ncbi-tools++/objects/seq/seq_loc_mapper_base.hpp
-include/ncbi-tools++/objects/seq/seq_loc_reverse_complementer.hpp
-include/ncbi-tools++/objects/seq/seq_macros.hpp
-include/ncbi-tools++/objects/seq/seqport_util.hpp
-include/ncbi-tools++/objects/seqset/Bioseq_set_.hpp
-include/ncbi-tools++/objects/seqset/Bioseq_set.hpp
include/ncbi-tools++/objects/seqset/.cvsignore
-include/ncbi-tools++/objects/seqset/gb_release_file.hpp
+include/ncbi-tools++/objects/seqset/Bioseq_set.hpp
+include/ncbi-tools++/objects/seqset/Bioseq_set_.hpp
include/ncbi-tools++/objects/seqset/NCBI_Seqset_module.hpp
-include/ncbi-tools++/objects/seqset/Seq_entry_.hpp
include/ncbi-tools++/objects/seqset/Seq_entry.hpp
-include/ncbi-tools++/objects/seqset/seqset_exception.hpp
+include/ncbi-tools++/objects/seqset/Seq_entry_.hpp
+include/ncbi-tools++/objects/seqset/gb_release_file.hpp
include/ncbi-tools++/objects/seqset/seqset__.hpp
+include/ncbi-tools++/objects/seqset/seqset_exception.hpp
include/ncbi-tools++/objects/seqset/seqset_macros.hpp
-include/ncbi-tools++/objects/seq/sofa_map.hpp
-include/ncbi-tools++/objects/seq/sofa_type.hpp
include/ncbi-tools++/objects/seqsplit/.cvsignore
-include/ncbi-tools++/objects/seqsplit/ID2S_Bioseq_Ids_.hpp
include/ncbi-tools++/objects/seqsplit/ID2S_Bioseq_Ids.hpp
-include/ncbi-tools++/objects/seqsplit/ID2S_Bioseq_Info_.hpp
+include/ncbi-tools++/objects/seqsplit/ID2S_Bioseq_Ids_.hpp
include/ncbi-tools++/objects/seqsplit/ID2S_Bioseq_Info.hpp
-include/ncbi-tools++/objects/seqsplit/ID2S_Bioseq_place_Info_.hpp
+include/ncbi-tools++/objects/seqsplit/ID2S_Bioseq_Info_.hpp
include/ncbi-tools++/objects/seqsplit/ID2S_Bioseq_place_Info.hpp
-include/ncbi-tools++/objects/seqsplit/ID2S_Bioseq_set_Ids_.hpp
+include/ncbi-tools++/objects/seqsplit/ID2S_Bioseq_place_Info_.hpp
include/ncbi-tools++/objects/seqsplit/ID2S_Bioseq_set_Ids.hpp
-include/ncbi-tools++/objects/seqsplit/ID2S_Bioseqs_Info_.hpp
+include/ncbi-tools++/objects/seqsplit/ID2S_Bioseq_set_Ids_.hpp
include/ncbi-tools++/objects/seqsplit/ID2S_Bioseqs_Info.hpp
-include/ncbi-tools++/objects/seqsplit/ID2S_Chunk_Content_.hpp
+include/ncbi-tools++/objects/seqsplit/ID2S_Bioseqs_Info_.hpp
+include/ncbi-tools++/objects/seqsplit/ID2S_Chunk.hpp
+include/ncbi-tools++/objects/seqsplit/ID2S_Chunk_.hpp
include/ncbi-tools++/objects/seqsplit/ID2S_Chunk_Content.hpp
-include/ncbi-tools++/objects/seqsplit/ID2S_Chunk_Data_.hpp
+include/ncbi-tools++/objects/seqsplit/ID2S_Chunk_Content_.hpp
include/ncbi-tools++/objects/seqsplit/ID2S_Chunk_Data.hpp
-include/ncbi-tools++/objects/seqsplit/ID2S_Chunk_.hpp
-include/ncbi-tools++/objects/seqsplit/ID2S_Chunk.hpp
-include/ncbi-tools++/objects/seqsplit/ID2S_Chunk_Id_.hpp
+include/ncbi-tools++/objects/seqsplit/ID2S_Chunk_Data_.hpp
include/ncbi-tools++/objects/seqsplit/ID2S_Chunk_Id.hpp
-include/ncbi-tools++/objects/seqsplit/ID2S_Chunk_Info_.hpp
+include/ncbi-tools++/objects/seqsplit/ID2S_Chunk_Id_.hpp
include/ncbi-tools++/objects/seqsplit/ID2S_Chunk_Info.hpp
-include/ncbi-tools++/objects/seqsplit/ID2S_Feat_type_Info_.hpp
+include/ncbi-tools++/objects/seqsplit/ID2S_Chunk_Info_.hpp
include/ncbi-tools++/objects/seqsplit/ID2S_Feat_type_Info.hpp
-include/ncbi-tools++/objects/seqsplit/ID2S_Gi_Interval_.hpp
+include/ncbi-tools++/objects/seqsplit/ID2S_Feat_type_Info_.hpp
include/ncbi-tools++/objects/seqsplit/ID2S_Gi_Interval.hpp
-include/ncbi-tools++/objects/seqsplit/ID2S_Gi_Ints_.hpp
+include/ncbi-tools++/objects/seqsplit/ID2S_Gi_Interval_.hpp
include/ncbi-tools++/objects/seqsplit/ID2S_Gi_Ints.hpp
-include/ncbi-tools++/objects/seqsplit/ID2S_Gi_Range_.hpp
+include/ncbi-tools++/objects/seqsplit/ID2S_Gi_Ints_.hpp
include/ncbi-tools++/objects/seqsplit/ID2S_Gi_Range.hpp
-include/ncbi-tools++/objects/seqsplit/ID2S_Interval_.hpp
+include/ncbi-tools++/objects/seqsplit/ID2S_Gi_Range_.hpp
include/ncbi-tools++/objects/seqsplit/ID2S_Interval.hpp
-include/ncbi-tools++/objects/seqsplit/ID2S_Seq_annot_Info_.hpp
+include/ncbi-tools++/objects/seqsplit/ID2S_Interval_.hpp
include/ncbi-tools++/objects/seqsplit/ID2S_Seq_annot_Info.hpp
-include/ncbi-tools++/objects/seqsplit/ID2S_Seq_annot_place_Info_.hpp
+include/ncbi-tools++/objects/seqsplit/ID2S_Seq_annot_Info_.hpp
include/ncbi-tools++/objects/seqsplit/ID2S_Seq_annot_place_Info.hpp
-include/ncbi-tools++/objects/seqsplit/ID2S_Seq_assembly_Info_.hpp
+include/ncbi-tools++/objects/seqsplit/ID2S_Seq_annot_place_Info_.hpp
include/ncbi-tools++/objects/seqsplit/ID2S_Seq_assembly_Info.hpp
-include/ncbi-tools++/objects/seqsplit/ID2S_Seq_data_Info_.hpp
+include/ncbi-tools++/objects/seqsplit/ID2S_Seq_assembly_Info_.hpp
include/ncbi-tools++/objects/seqsplit/ID2S_Seq_data_Info.hpp
-include/ncbi-tools++/objects/seqsplit/ID2S_Seq_descr_Info_.hpp
+include/ncbi-tools++/objects/seqsplit/ID2S_Seq_data_Info_.hpp
include/ncbi-tools++/objects/seqsplit/ID2S_Seq_descr_Info.hpp
-include/ncbi-tools++/objects/seqsplit/ID2S_Seq_feat_Ids_Info_.hpp
+include/ncbi-tools++/objects/seqsplit/ID2S_Seq_descr_Info_.hpp
include/ncbi-tools++/objects/seqsplit/ID2S_Seq_feat_Ids_Info.hpp
-include/ncbi-tools++/objects/seqsplit/ID2S_Seq_id_Interval_.hpp
+include/ncbi-tools++/objects/seqsplit/ID2S_Seq_feat_Ids_Info_.hpp
include/ncbi-tools++/objects/seqsplit/ID2S_Seq_id_Interval.hpp
-include/ncbi-tools++/objects/seqsplit/ID2S_Seq_id_Ints_.hpp
+include/ncbi-tools++/objects/seqsplit/ID2S_Seq_id_Interval_.hpp
include/ncbi-tools++/objects/seqsplit/ID2S_Seq_id_Ints.hpp
-include/ncbi-tools++/objects/seqsplit/ID2S_Seq_loc_.hpp
+include/ncbi-tools++/objects/seqsplit/ID2S_Seq_id_Ints_.hpp
include/ncbi-tools++/objects/seqsplit/ID2S_Seq_loc.hpp
-include/ncbi-tools++/objects/seqsplit/ID2S_Seq_map_Info_.hpp
+include/ncbi-tools++/objects/seqsplit/ID2S_Seq_loc_.hpp
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include/ncbi-tools++/objects/valid/Phrase_list.hpp
-include/ncbi-tools++/objects/valid/Severity_level_.hpp
+include/ncbi-tools++/objects/valid/Phrase_list_.hpp
include/ncbi-tools++/objects/valid/Severity_level.hpp
+include/ncbi-tools++/objects/valid/Severity_level_.hpp
include/ncbi-tools++/objects/valid/valid__.hpp
include/ncbi-tools++/objects/variation/.cvsignore
include/ncbi-tools++/objects/variation/NCBI_VariationPackage_module.hpp
-include/ncbi-tools++/objects/variation/VariantPlacement_.hpp
include/ncbi-tools++/objects/variation/VariantPlacement.hpp
-include/ncbi-tools++/objects/variation/VariationException_.hpp
-include/ncbi-tools++/objects/variation/VariationException.hpp
-include/ncbi-tools++/objects/variation/variation__.hpp
-include/ncbi-tools++/objects/variation/Variation_.hpp
+include/ncbi-tools++/objects/variation/VariantPlacement_.hpp
include/ncbi-tools++/objects/variation/Variation.hpp
-include/ncbi-tools++/objects/variation/VariationMethod_.hpp
+include/ncbi-tools++/objects/variation/VariationException.hpp
+include/ncbi-tools++/objects/variation/VariationException_.hpp
include/ncbi-tools++/objects/variation/VariationMethod.hpp
+include/ncbi-tools++/objects/variation/VariationMethod_.hpp
+include/ncbi-tools++/objects/variation/Variation_.hpp
+include/ncbi-tools++/objects/variation/variation__.hpp
include/ncbi-tools++/objmgr/align_ci.hpp
include/ncbi-tools++/objmgr/annot_ci.hpp
include/ncbi-tools++/objmgr/annot_name.hpp
include/ncbi-tools++/objmgr/annot_selector.hpp
-include/ncbi-tools++/objmgr/annot_types_ci.hpp
include/ncbi-tools++/objmgr/annot_type_selector.hpp
+include/ncbi-tools++/objmgr/annot_types_ci.hpp
include/ncbi-tools++/objmgr/bio_object_id.hpp
include/ncbi-tools++/objmgr/bioseq_ci.hpp
include/ncbi-tools++/objmgr/bioseq_handle.hpp
include/ncbi-tools++/objmgr/bioseq_set_handle.hpp
include/ncbi-tools++/objmgr/blob_id.hpp
-include/ncbi-tools++/objmgr/data_loader_factory.hpp
include/ncbi-tools++/objmgr/data_loader.hpp
+include/ncbi-tools++/objmgr/data_loader_factory.hpp
include/ncbi-tools++/objmgr/edit_saver.hpp
include/ncbi-tools++/objmgr/edits_db_engine.hpp
include/ncbi-tools++/objmgr/edits_db_saver.hpp
@@ -3079,9 +3079,9 @@ include/ncbi-tools++/objmgr/impl/seq_loc_cvt.hpp
include/ncbi-tools++/objmgr/impl/seq_table_info.hpp
include/ncbi-tools++/objmgr/impl/seq_table_setter.hpp
include/ncbi-tools++/objmgr/impl/seq_table_setters.hpp
+include/ncbi-tools++/objmgr/impl/seq_vector_cvt.hpp
include/ncbi-tools++/objmgr/impl/seq_vector_cvt_gcc_i386.hpp
include/ncbi-tools++/objmgr/impl/seq_vector_cvt_gen.hpp
-include/ncbi-tools++/objmgr/impl/seq_vector_cvt.hpp
include/ncbi-tools++/objmgr/impl/snp_annot_info.hpp
include/ncbi-tools++/objmgr/impl/snp_info.hpp
include/ncbi-tools++/objmgr/impl/synonyms.hpp
@@ -3097,27 +3097,27 @@ include/ncbi-tools++/objmgr/mapped_feat.hpp
include/ncbi-tools++/objmgr/object_manager.hpp
include/ncbi-tools++/objmgr/objmgr_exception.hpp
include/ncbi-tools++/objmgr/objmgr_version.hpp
-include/ncbi-tools++/objmgr/prefetch_actions.hpp
include/ncbi-tools++/objmgr/prefetch.hpp
+include/ncbi-tools++/objmgr/prefetch_actions.hpp
include/ncbi-tools++/objmgr/prefetch_manager.hpp
include/ncbi-tools++/objmgr/scope.hpp
include/ncbi-tools++/objmgr/scope_transaction.hpp
include/ncbi-tools++/objmgr/seq_align_handle.hpp
include/ncbi-tools++/objmgr/seq_annot_ci.hpp
include/ncbi-tools++/objmgr/seq_annot_handle.hpp
-include/ncbi-tools++/objmgr/seqdesc_ci.hpp
include/ncbi-tools++/objmgr/seq_descr_ci.hpp
include/ncbi-tools++/objmgr/seq_entry_ci.hpp
include/ncbi-tools++/objmgr/seq_entry_handle.hpp
include/ncbi-tools++/objmgr/seq_feat_handle.hpp
include/ncbi-tools++/objmgr/seq_graph_handle.hpp
include/ncbi-tools++/objmgr/seq_loc_mapper.hpp
-include/ncbi-tools++/objmgr/seq_map_ci.hpp
include/ncbi-tools++/objmgr/seq_map.hpp
+include/ncbi-tools++/objmgr/seq_map_ci.hpp
include/ncbi-tools++/objmgr/seq_map_switch.hpp
include/ncbi-tools++/objmgr/seq_table_ci.hpp
-include/ncbi-tools++/objmgr/seq_vector_ci.hpp
include/ncbi-tools++/objmgr/seq_vector.hpp
+include/ncbi-tools++/objmgr/seq_vector_ci.hpp
+include/ncbi-tools++/objmgr/seqdesc_ci.hpp
include/ncbi-tools++/objmgr/split/annot_piece.hpp
include/ncbi-tools++/objmgr/split/asn_sizer.hpp
include/ncbi-tools++/objmgr/split/blob_splitter.hpp
@@ -3154,24 +3154,24 @@ include/ncbi-tools++/objtools/alnmgr/aln_asn_reader.hpp
include/ncbi-tools++/objtools/alnmgr/aln_builders.hpp
include/ncbi-tools++/objtools/alnmgr/aln_container.hpp
include/ncbi-tools++/objtools/alnmgr/aln_converters.hpp
-include/ncbi-tools++/objtools/alnmgr/alndiag.hpp
-include/ncbi-tools++/objtools/alnmgr/alnexception.hpp
include/ncbi-tools++/objtools/alnmgr/aln_explorer.hpp
include/ncbi-tools++/objtools/alnmgr/aln_generators.hpp
+include/ncbi-tools++/objtools/alnmgr/aln_rng_coll_oper.hpp
+include/ncbi-tools++/objtools/alnmgr/aln_seqid.hpp
+include/ncbi-tools++/objtools/alnmgr/aln_serial.hpp
+include/ncbi-tools++/objtools/alnmgr/aln_stats.hpp
+include/ncbi-tools++/objtools/alnmgr/aln_tests.hpp
+include/ncbi-tools++/objtools/alnmgr/aln_user_options.hpp
+include/ncbi-tools++/objtools/alnmgr/alndiag.hpp
+include/ncbi-tools++/objtools/alnmgr/alnexception.hpp
include/ncbi-tools++/objtools/alnmgr/alnmap.hpp
include/ncbi-tools++/objtools/alnmgr/alnmatch.hpp
include/ncbi-tools++/objtools/alnmgr/alnmerger.hpp
include/ncbi-tools++/objtools/alnmgr/alnmix.hpp
include/ncbi-tools++/objtools/alnmgr/alnpos_ci.hpp
-include/ncbi-tools++/objtools/alnmgr/aln_rng_coll_oper.hpp
include/ncbi-tools++/objtools/alnmgr/alnsegments.hpp
include/ncbi-tools++/objtools/alnmgr/alnseq.hpp
-include/ncbi-tools++/objtools/alnmgr/aln_seqid.hpp
-include/ncbi-tools++/objtools/alnmgr/aln_serial.hpp
-include/ncbi-tools++/objtools/alnmgr/aln_stats.hpp
-include/ncbi-tools++/objtools/alnmgr/aln_tests.hpp
include/ncbi-tools++/objtools/alnmgr/alntext.hpp
-include/ncbi-tools++/objtools/alnmgr/aln_user_options.hpp
include/ncbi-tools++/objtools/alnmgr/alnvec.hpp
include/ncbi-tools++/objtools/alnmgr/alnvec_iterator.hpp
include/ncbi-tools++/objtools/alnmgr/pairwise_aln.hpp
@@ -3197,44 +3197,44 @@ include/ncbi-tools++/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp
include/ncbi-tools++/objtools/blast/seqdb_reader/impl/seqdbisam.hpp
include/ncbi-tools++/objtools/blast/seqdb_reader/impl/seqdbtax.hpp
include/ncbi-tools++/objtools/blast/seqdb_reader/impl/seqdbvol.hpp
+include/ncbi-tools++/objtools/blast/seqdb_reader/seqdb.hpp
include/ncbi-tools++/objtools/blast/seqdb_reader/seqdbblob.hpp
include/ncbi-tools++/objtools/blast/seqdb_reader/seqdbcommon.hpp
include/ncbi-tools++/objtools/blast/seqdb_reader/seqdbexpert.hpp
-include/ncbi-tools++/objtools/blast/seqdb_reader/seqdb.hpp
include/ncbi-tools++/objtools/blast/seqdb_writer/build_db.hpp
include/ncbi-tools++/objtools/blast/seqdb_writer/impl/criteria.hpp
include/ncbi-tools++/objtools/blast/seqdb_writer/multisource_util.hpp
include/ncbi-tools++/objtools/blast/seqdb_writer/taxid_set.hpp
+include/ncbi-tools++/objtools/blast/seqdb_writer/writedb.hpp
include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_convert.hpp
include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_error.hpp
include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_files.hpp
include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_general.hpp
-include/ncbi-tools++/objtools/blast/seqdb_writer/writedb.hpp
include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_isam.hpp
include/ncbi-tools++/objtools/blast/services/blast_services.hpp
include/ncbi-tools++/objtools/cleanup/autogenerated_cleanup.hpp
-include/ncbi-tools++/objtools/cleanup/cleanup_change.hpp
include/ncbi-tools++/objtools/cleanup/cleanup.hpp
+include/ncbi-tools++/objtools/cleanup/cleanup_change.hpp
include/ncbi-tools++/objtools/cleanup/newcleanup.hpp
include/ncbi-tools++/objtools/data_loaders/blastdb/bdbloader.hpp
include/ncbi-tools++/objtools/data_loaders/blastdb/bdbloader_rmt.hpp
include/ncbi-tools++/objtools/data_loaders/blastdb/blastdb_adapter.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/blob_id.hpp
-include/ncbi-tools++/objtools/data_loaders/genbank/cache/reader_cache_entry.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/cache/reader_cache.hpp
+include/ncbi-tools++/objtools/data_loaders/genbank/cache/reader_cache_entry.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/cache/reader_cache_params.h
-include/ncbi-tools++/objtools/data_loaders/genbank/cache/writer_cache_entry.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/cache/writer_cache.hpp
+include/ncbi-tools++/objtools/data_loaders/genbank/cache/writer_cache_entry.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/gbloader.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/gbloader_params.h
-include/ncbi-tools++/objtools/data_loaders/genbank/gicache/reader_gicache_entry.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/gicache/reader_gicache.hpp
+include/ncbi-tools++/objtools/data_loaders/genbank/gicache/reader_gicache_entry.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/gicache/reader_gicache_params.h
-include/ncbi-tools++/objtools/data_loaders/genbank/id1/reader_id1_entry.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/id1/reader_id1.hpp
+include/ncbi-tools++/objtools/data_loaders/genbank/id1/reader_id1_entry.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/id1/reader_id1_params.h
-include/ncbi-tools++/objtools/data_loaders/genbank/id2/reader_id2_entry.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/id2/reader_id2.hpp
+include/ncbi-tools++/objtools/data_loaders/genbank/id2/reader_id2_entry.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/id2/reader_id2_params.h
include/ncbi-tools++/objtools/data_loaders/genbank/impl/cache_manager.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/impl/dispatcher.hpp
@@ -3250,33 +3250,33 @@ include/ncbi-tools++/objtools/data_loaders/genbank/impl/request_result.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/impl/split_parser.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/impl/standalone_result.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/impl/statistics.hpp
-include/ncbi-tools++/objtools/data_loaders/genbank/pubseq2/reader_pubseq2_entry.hpp
-include/ncbi-tools++/objtools/data_loaders/genbank/pubseq2/reader_pubseq2.hpp
-include/ncbi-tools++/objtools/data_loaders/genbank/pubseq2/reader_pubseq2_params.h
-include/ncbi-tools++/objtools/data_loaders/genbank/pubseq/reader_pubseq_entry.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/pubseq/reader_pubseq.hpp
+include/ncbi-tools++/objtools/data_loaders/genbank/pubseq/reader_pubseq_entry.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/pubseq/reader_pubseq_params.h
+include/ncbi-tools++/objtools/data_loaders/genbank/pubseq2/reader_pubseq2.hpp
+include/ncbi-tools++/objtools/data_loaders/genbank/pubseq2/reader_pubseq2_entry.hpp
+include/ncbi-tools++/objtools/data_loaders/genbank/pubseq2/reader_pubseq2_params.h
include/ncbi-tools++/objtools/data_loaders/genbank/reader.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/reader_interface.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/reader_params.h
-include/ncbi-tools++/objtools/data_loaders/genbank/readers/cache/reader_cache.hpp
-include/ncbi-tools++/objtools/data_loaders/genbank/readers/cache/writer_cache.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/reader_service_params.h
+include/ncbi-tools++/objtools/data_loaders/genbank/reader_snp.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/readers.hpp
+include/ncbi-tools++/objtools/data_loaders/genbank/readers/cache/reader_cache.hpp
+include/ncbi-tools++/objtools/data_loaders/genbank/readers/cache/writer_cache.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/readers/id1/reader_id1.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/readers/id2/reader_id2.hpp
-include/ncbi-tools++/objtools/data_loaders/genbank/reader_snp.hpp
-include/ncbi-tools++/objtools/data_loaders/genbank/readers/pubseqos2/reader_pubseq2.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/readers/pubseqos/reader_pubseq.hpp
+include/ncbi-tools++/objtools/data_loaders/genbank/readers/pubseqos2/reader_pubseq2.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/seqref.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/writer.hpp
include/ncbi-tools++/objtools/data_loaders/genbank/writer_interface.hpp
include/ncbi-tools++/objtools/data_loaders/loaders.hpp
include/ncbi-tools++/objtools/edit/apply_object.hpp
+include/ncbi-tools++/objtools/edit/autodef.hpp
include/ncbi-tools++/objtools/edit/autodef_available_modifier.hpp
-include/ncbi-tools++/objtools/edit/autodef_feature_clause_base.hpp
include/ncbi-tools++/objtools/edit/autodef_feature_clause.hpp
-include/ncbi-tools++/objtools/edit/autodef.hpp
+include/ncbi-tools++/objtools/edit/autodef_feature_clause_base.hpp
include/ncbi-tools++/objtools/edit/autodef_mod_combo.hpp
include/ncbi-tools++/objtools/edit/autodef_source_desc.hpp
include/ncbi-tools++/objtools/edit/autodef_source_group.hpp
@@ -3340,8 +3340,8 @@ include/ncbi-tools++/objtools/format/items/gene_finder.hpp
include/ncbi-tools++/objtools/format/items/genome_item.hpp
include/ncbi-tools++/objtools/format/items/genome_project_item.hpp
include/ncbi-tools++/objtools/format/items/html_anchor_item.hpp
-include/ncbi-tools++/objtools/format/items/item_base.hpp
include/ncbi-tools++/objtools/format/items/item.hpp
+include/ncbi-tools++/objtools/format/items/item_base.hpp
include/ncbi-tools++/objtools/format/items/keywords_item.hpp
include/ncbi-tools++/objtools/format/items/locus_item.hpp
include/ncbi-tools++/objtools/format/items/origin_item.hpp
@@ -3366,8 +3366,8 @@ include/ncbi-tools++/objtools/readers/aln_reader.hpp
include/ncbi-tools++/objtools/readers/bed_reader.hpp
include/ncbi-tools++/objtools/readers/cigar.hpp
include/ncbi-tools++/objtools/readers/error_container.hpp
-include/ncbi-tools++/objtools/readers/fasta_exception.hpp
include/ncbi-tools++/objtools/readers/fasta.hpp
+include/ncbi-tools++/objtools/readers/fasta_exception.hpp
include/ncbi-tools++/objtools/readers/featuredump.hpp
include/ncbi-tools++/objtools/readers/format_guess_ex.hpp
include/ncbi-tools++/objtools/readers/getfeature.hpp
@@ -3385,11 +3385,11 @@ include/ncbi-tools++/objtools/readers/line_error.hpp
include/ncbi-tools++/objtools/readers/message_listener.hpp
include/ncbi-tools++/objtools/readers/microarray_reader.hpp
include/ncbi-tools++/objtools/readers/phrap.hpp
+include/ncbi-tools++/objtools/readers/read_util.hpp
include/ncbi-tools++/objtools/readers/reader_base.hpp
include/ncbi-tools++/objtools/readers/reader_exception.hpp
include/ncbi-tools++/objtools/readers/reader_idgen.hpp
include/ncbi-tools++/objtools/readers/readfeat.hpp
-include/ncbi-tools++/objtools/readers/read_util.hpp
include/ncbi-tools++/objtools/readers/rm_reader.hpp
include/ncbi-tools++/objtools/readers/source_mod_parser.hpp
include/ncbi-tools++/objtools/readers/source_mod_parser_wrapper.hpp
@@ -3401,9 +3401,9 @@ include/ncbi-tools++/objtools/seqmasks_io/mask_bdb_reader.hpp
include/ncbi-tools++/objtools/seqmasks_io/mask_cmdline_args.hpp
include/ncbi-tools++/objtools/seqmasks_io/mask_fasta_reader.hpp
include/ncbi-tools++/objtools/seqmasks_io/mask_reader.hpp
+include/ncbi-tools++/objtools/seqmasks_io/mask_writer.hpp
include/ncbi-tools++/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp
include/ncbi-tools++/objtools/seqmasks_io/mask_writer_fasta.hpp
-include/ncbi-tools++/objtools/seqmasks_io/mask_writer.hpp
include/ncbi-tools++/objtools/seqmasks_io/mask_writer_int.hpp
include/ncbi-tools++/objtools/seqmasks_io/mask_writer_seqloc.hpp
include/ncbi-tools++/objtools/seqmasks_io/mask_writer_tab.hpp
@@ -3418,11 +3418,11 @@ include/ncbi-tools++/serial/impl/autoptrinfo.hpp
include/ncbi-tools++/serial/impl/choice.hpp
include/ncbi-tools++/serial/impl/choice.inl
include/ncbi-tools++/serial/impl/choiceptr.hpp
+include/ncbi-tools++/serial/impl/classinfo.hpp
+include/ncbi-tools++/serial/impl/classinfo.inl
include/ncbi-tools++/serial/impl/classinfob.hpp
include/ncbi-tools++/serial/impl/classinfob.inl
include/ncbi-tools++/serial/impl/classinfohelper.hpp
-include/ncbi-tools++/serial/impl/classinfo.hpp
-include/ncbi-tools++/serial/impl/classinfo.inl
include/ncbi-tools++/serial/impl/continfo.hpp
include/ncbi-tools++/serial/impl/continfo.inl
include/ncbi-tools++/serial/impl/enumerated.hpp
@@ -3432,9 +3432,9 @@ include/ncbi-tools++/serial/impl/hookfunc.hpp
include/ncbi-tools++/serial/impl/item.hpp
include/ncbi-tools++/serial/impl/item.inl
include/ncbi-tools++/serial/impl/member.hpp
+include/ncbi-tools++/serial/impl/member.inl
include/ncbi-tools++/serial/impl/memberid.hpp
include/ncbi-tools++/serial/impl/memberid.inl
-include/ncbi-tools++/serial/impl/member.inl
include/ncbi-tools++/serial/impl/memberlist.hpp
include/ncbi-tools++/serial/impl/memberlist.inl
include/ncbi-tools++/serial/impl/objcopy.inl
@@ -3442,9 +3442,9 @@ include/ncbi-tools++/serial/impl/objectinfo.inl
include/ncbi-tools++/serial/impl/objectio.inl
include/ncbi-tools++/serial/impl/objectiter.inl
include/ncbi-tools++/serial/impl/objecttype.hpp
+include/ncbi-tools++/serial/impl/objistr.inl
include/ncbi-tools++/serial/impl/objistrasnb.inl
include/ncbi-tools++/serial/impl/objistrimpl.hpp
-include/ncbi-tools++/serial/impl/objistr.inl
include/ncbi-tools++/serial/impl/objistrxml.inl
include/ncbi-tools++/serial/impl/objlist.hpp
include/ncbi-tools++/serial/impl/objlist.inl
@@ -3460,13 +3460,13 @@ include/ncbi-tools++/serial/impl/ptrinfo.inl
include/ncbi-tools++/serial/impl/serialasndef.hpp
include/ncbi-tools++/serial/impl/stdtypeinfo.hpp
include/ncbi-tools++/serial/impl/stdtypes.hpp
-include/ncbi-tools++/serial/impl/stdtypesimpl.hpp
include/ncbi-tools++/serial/impl/stdtypes.inl
+include/ncbi-tools++/serial/impl/stdtypesimpl.hpp
include/ncbi-tools++/serial/impl/stltypes.hpp
include/ncbi-tools++/serial/impl/stltypesimpl.hpp
include/ncbi-tools++/serial/impl/timetypeinfo.hpp
-include/ncbi-tools++/serial/impl/typeinfoimpl.hpp
include/ncbi-tools++/serial/impl/typeinfo.inl
+include/ncbi-tools++/serial/impl/typeinfoimpl.hpp
include/ncbi-tools++/serial/impl/typemap.hpp
include/ncbi-tools++/serial/impl/typemapimpl.hpp
include/ncbi-tools++/serial/impl/typeref.hpp
@@ -3479,34 +3479,35 @@ include/ncbi-tools++/serial/objectinfo.hpp
include/ncbi-tools++/serial/objectio.hpp
include/ncbi-tools++/serial/objectiter.hpp
include/ncbi-tools++/serial/objhook.hpp
-include/ncbi-tools++/serial/objistrasnb.hpp
-include/ncbi-tools++/serial/objistrasn.hpp
include/ncbi-tools++/serial/objistr.hpp
+include/ncbi-tools++/serial/objistrasn.hpp
+include/ncbi-tools++/serial/objistrasnb.hpp
include/ncbi-tools++/serial/objistrjson.hpp
include/ncbi-tools++/serial/objistrxml.hpp
-include/ncbi-tools++/serial/objostrasnb.hpp
-include/ncbi-tools++/serial/objostrasn.hpp
include/ncbi-tools++/serial/objostr.hpp
+include/ncbi-tools++/serial/objostrasn.hpp
+include/ncbi-tools++/serial/objostrasnb.hpp
include/ncbi-tools++/serial/objostrjson.hpp
include/ncbi-tools++/serial/objostrxml.hpp
include/ncbi-tools++/serial/pack_string.hpp
include/ncbi-tools++/serial/rpcbase.hpp
+include/ncbi-tools++/serial/serial.hpp
include/ncbi-tools++/serial/serialasn.hpp
include/ncbi-tools++/serial/serialbase.hpp
include/ncbi-tools++/serial/serialdef.hpp
-include/ncbi-tools++/serial/serial.hpp
include/ncbi-tools++/serial/serialimpl.hpp
include/ncbi-tools++/serial/serializable.hpp
include/ncbi-tools++/serial/serialutil.hpp
include/ncbi-tools++/serial/streamiter.hpp
include/ncbi-tools++/serial/typeinfo.hpp
-include/ncbi-tools++/util/align_range_coll.hpp
include/ncbi-tools++/util/align_range.hpp
+include/ncbi-tools++/util/align_range_coll.hpp
include/ncbi-tools++/util/align_range_oper.hpp
include/ncbi-tools++/util/arg_regexp.hpp
include/ncbi-tools++/util/ascii85.hpp
include/ncbi-tools++/util/bitset/bitset_debug.hpp
include/ncbi-tools++/util/bitset/bitset_pool.hpp
+include/ncbi-tools++/util/bitset/bm.h
include/ncbi-tools++/util/bitset/bmalgo.h
include/ncbi-tools++/util/bitset/bmalgo_impl.h
include/ncbi-tools++/util/bitset/bmalloc.h
@@ -3517,7 +3518,6 @@ include/ncbi-tools++/util/bitset/bmdef.h
include/ncbi-tools++/util/bitset/bmfunc.h
include/ncbi-tools++/util/bitset/bmfwd.h
include/ncbi-tools++/util/bitset/bmgamma.h
-include/ncbi-tools++/util/bitset/bm.h
include/ncbi-tools++/util/bitset/bmrandom.h
include/ncbi-tools++/util/bitset/bmserial.h
include/ncbi-tools++/util/bitset/bmsse2.h
@@ -3529,21 +3529,21 @@ include/ncbi-tools++/util/bitset/bmutil.h
include/ncbi-tools++/util/bitset/bmvmin.h
include/ncbi-tools++/util/bitset/encoding.h
include/ncbi-tools++/util/bitset/license.txt
-include/ncbi-tools++/util/bitset/ncbi_bitset_alloc.hpp
include/ncbi-tools++/util/bitset/ncbi_bitset.hpp
+include/ncbi-tools++/util/bitset/ncbi_bitset_alloc.hpp
include/ncbi-tools++/util/bitset/ncbi_bitset_util.hpp
include/ncbi-tools++/util/bitset/readme
include/ncbi-tools++/util/buffer_writer.hpp
include/ncbi-tools++/util/bytesrc.hpp
include/ncbi-tools++/util/cache/cache_ref.hpp
+include/ncbi-tools++/util/cache/icache.hpp
include/ncbi-tools++/util/cache/icache_cf.hpp
include/ncbi-tools++/util/cache/icache_clean_thread.hpp
-include/ncbi-tools++/util/cache/icache.hpp
include/ncbi-tools++/util/checksum.hpp
-include/ncbi-tools++/util/compress/archive_.hpp
include/ncbi-tools++/util/compress/archive.hpp
-include/ncbi-tools++/util/compress/bzip2/bzlib.h
+include/ncbi-tools++/util/compress/archive_.hpp
include/ncbi-tools++/util/compress/bzip2.hpp
+include/ncbi-tools++/util/compress/bzip2/bzlib.h
include/ncbi-tools++/util/compress/compress.hpp
include/ncbi-tools++/util/compress/lzo.hpp
include/ncbi-tools++/util/compress/reader_zlib.hpp
@@ -3589,24 +3589,24 @@ include/ncbi-tools++/util/ncbi_cache.hpp
include/ncbi-tools++/util/ncbi_table.hpp
include/ncbi-tools++/util/ncbi_url.hpp
include/ncbi-tools++/util/random_gen.hpp
-include/ncbi-tools++/util/range_coll.hpp
include/ncbi-tools++/util/range.hpp
+include/ncbi-tools++/util/range_coll.hpp
include/ncbi-tools++/util/rangelist.hpp
include/ncbi-tools++/util/rangemap.hpp
include/ncbi-tools++/util/rangemap.inl
include/ncbi-tools++/util/reader_writer.hpp
include/ncbi-tools++/util/regexp.hpp
-include/ncbi-tools++/util/regexp/pcrecpparg.h
-include/ncbi-tools++/util/regexp/pcrecpp.h
include/ncbi-tools++/util/regexp/pcre.h
+include/ncbi-tools++/util/regexp/pcrecpp.h
+include/ncbi-tools++/util/regexp/pcrecpparg.h
include/ncbi-tools++/util/regexp/pcreposix.h
include/ncbi-tools++/util/request_control.hpp
include/ncbi-tools++/util/resize_iter.hpp
include/ncbi-tools++/util/resource_pool.hpp
include/ncbi-tools++/util/scheduler.hpp
+include/ncbi-tools++/util/sequtil/sequtil.hpp
include/ncbi-tools++/util/sequtil/sequtil_convert.hpp
include/ncbi-tools++/util/sequtil/sequtil_expt.hpp
-include/ncbi-tools++/util/sequtil/sequtil.hpp
include/ncbi-tools++/util/sequtil/sequtil_manip.hpp
include/ncbi-tools++/util/sgml_entity.hpp
include/ncbi-tools++/util/simple_buffer.hpp
@@ -3622,8 +3622,8 @@ include/ncbi-tools++/util/tables/raw_scoremat.h
include/ncbi-tools++/util/tables/tables_export.h
include/ncbi-tools++/util/text_joiner.hpp
include/ncbi-tools++/util/thread_nonstop.hpp
-include/ncbi-tools++/util/thread_pool_ctrl.hpp
include/ncbi-tools++/util/thread_pool.hpp
+include/ncbi-tools++/util/thread_pool_ctrl.hpp
include/ncbi-tools++/util/thread_pool_old.hpp
include/ncbi-tools++/util/time_line.hpp
include/ncbi-tools++/util/transmissionrw.hpp
@@ -3643,15 +3643,15 @@ lib/libaccess.so
lib/libalign_format.so
lib/libbiblio.so
lib/libbiotree.so
-lib/libblast_app_util.a
+lib/libblast.so
lib/libblast_app_util-static.a
-lib/libblastdb_format.so
+lib/libblast_app_util.a
+lib/libblast_services.so
lib/libblastdb.so
+lib/libblastdb_format.so
lib/libblastinput.so
-lib/libblast_services.so
-lib/libblast.so
-lib/libblastxml2.so
lib/libblastxml.so
+lib/libblastxml2.so
lib/libcdd.so
lib/libcn3d.so
lib/libcomposition_adjustment.so
@@ -3659,84 +3659,84 @@ lib/libconnect.so
lib/libconnext.so
lib/libconnssl.so
lib/libcreaders.so
+lib/libdbapi.so
+lib/libdbapi_driver-static.a
lib/libdbapi_driver.a
lib/libdbapi_driver.so
-lib/libdbapi_driver-static.a
-lib/libdbapi.so
lib/libdocsum.so
-lib/libentrez2cli.so
lib/libentrez2.so
+lib/libentrez2cli.so
lib/libentrezgene.so
lib/libfeatdef.so
-lib/libgbproj.a
lib/libgbproj-static.a
+lib/libgbproj.a
lib/libgbseq.so
-lib/libgencoll_client.a
lib/libgencoll_client-static.a
+lib/libgencoll_client.a
lib/libgene_info.so
lib/libgeneral.so
lib/libgenesbyloc.so
lib/libgenome_collection.so
lib/libhomologene.so
-lib/libid1cli.so
lib/libid1.so
-lib/libid2cli.so
+lib/libid1cli.so
lib/libid2.so
lib/libid2_split.so
+lib/libid2cli.so
lib/libigblast.so
lib/libinsdseq.so
lib/libmacro.so
lib/libmedlars.so
lib/libmedline.so
lib/libmim.so
-lib/libmlacli.so
lib/libmla.so
+lib/libmlacli.so
lib/libmmdb.so
-lib/libncbimime.so
lib/libncbi_xblobstorage_netcache.so
+lib/libncbi_xcache_dbapi-static.a
lib/libncbi_xcache_dbapi.a
lib/libncbi_xcache_dbapi.so
-lib/libncbi_xcache_dbapi-static.a
+lib/libncbi_xcache_netcache-static.a
lib/libncbi_xcache_netcache.a
lib/libncbi_xcache_netcache.so
-lib/libncbi_xcache_netcache-static.a
-lib/libncbi_xloader_blastdb_rmt.so
lib/libncbi_xloader_blastdb.so
+lib/libncbi_xloader_blastdb_rmt.so
+lib/libncbi_xloader_genbank-static.a
lib/libncbi_xloader_genbank.a
lib/libncbi_xloader_genbank.so
-lib/libncbi_xloader_genbank-static.a
+lib/libncbi_xreader-static.a
lib/libncbi_xreader.a
+lib/libncbi_xreader.so
+lib/libncbi_xreader_cache-static.a
lib/libncbi_xreader_cache.a
lib/libncbi_xreader_cache.so
-lib/libncbi_xreader_cache-static.a
+lib/libncbi_xreader_gicache-static.a
lib/libncbi_xreader_gicache.a
lib/libncbi_xreader_gicache.so
-lib/libncbi_xreader_gicache-static.a
+lib/libncbi_xreader_id1-static.a
lib/libncbi_xreader_id1.a
lib/libncbi_xreader_id1.so
-lib/libncbi_xreader_id1-static.a
+lib/libncbi_xreader_id2-static.a
lib/libncbi_xreader_id2.a
lib/libncbi_xreader_id2.so
-lib/libncbi_xreader_id2-static.a
-lib/libncbi_xreader.so
-lib/libncbi_xreader-static.a
+lib/libncbimime.so
lib/libobjcoords.so
lib/libobjprt.so
lib/libomssa.so
lib/libpcassay.so
lib/libpcsubstance.so
lib/libproj.so
-lib/libpubmed.so
lib/libpub.so
-lib/libremapcli.so
+lib/libpubmed.so
lib/libremap.so
+lib/libremapcli.so
lib/libscoremat.so
+lib/libseq.so
lib/libseqcode.so
lib/libseqdb.so
lib/libseqedit.so
lib/libseqmasks_io.so
lib/libseqset.so
-lib/libseq.so
lib/libseqsplit.so
lib/libseqtest.so
lib/libsequtil.so
@@ -3746,12 +3746,12 @@ lib/libtaxon1.so
lib/libtaxon3.so
lib/libtest_mt.so
lib/libtinyseq.so
+lib/libtrackmgr-static.a
lib/libtrackmgr.a
-lib/libtrackmgrcli.a
lib/libtrackmgrcli-static.a
-lib/libtrackmgrgridcli.a
+lib/libtrackmgrcli.a
lib/libtrackmgrgridcli-static.a
-lib/libtrackmgr-static.a
+lib/libtrackmgrgridcli.a
lib/libvalerr.so
lib/libvalid.so
lib/libvariation.so
@@ -3761,8 +3761,8 @@ lib/libxalgodustmask.so
lib/libxalgosegmask.so
lib/libxalgowinmask.so
lib/libxalnmgr.so
-lib/libxblastformat.so
lib/libxblast.so
+lib/libxblastformat.so
lib/libxcgi.so
lib/libxcleanup.so
lib/libxcompress.so
@@ -3774,12 +3774,12 @@ lib/libxfcgi.so
lib/libxformat.so
lib/libxhtml.so
lib/libxncbi.so
-lib/libxnetblastcli.so
lib/libxnetblast.so
+lib/libxnetblastcli.so
lib/libxobjedit.so
lib/libxobjmgr.so
-lib/libxobjreadex.so
lib/libxobjread.so
+lib/libxobjreadex.so
lib/libxobjsimple.so
lib/libxobjutil.so
lib/libxregexp.so
diff --git a/ncp/Makefile b/ncp/Makefile
index bf5cd16016..9c585391eb 100644
--- a/ncp/Makefile
+++ b/ncp/Makefile
@@ -11,7 +11,7 @@ HOMEPAGE= http://www.fefe.de/ncp/
COMMENT= Fast file copy tool for LANs
#LICENSE= asked upstream, will fill in when he replies
-CFLAGS+= -I${BUILDLINK_PREFIX.libowfat}/include/libowfat
+CFLAGS+= -I${BUILDLINK_PREFIX.libowfat}/include/libowfat
INSTALL_MAKE_FLAGS= PREFIX=${DESTDIR}${PREFIX}
.include "../../devel/libowfat/buildlink3.mk"
diff --git a/neb-cd512/Makefile b/neb-cd512/Makefile
index 610b8fab4d..08dc6c20c5 100644
--- a/neb-cd512/Makefile
+++ b/neb-cd512/Makefile
@@ -7,8 +7,8 @@ CATEGORIES= sysutils
MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=neb-stoehr/}
EXTRACT_SUFX= .tgz
-MAINTAINER= netbsd%wolfnode.de@localhost
-HOMEPAGE= http://neb-stoehr.sourceforge.net/
+MAINTAINER= netbsd%wolfnode.de@localhost
+HOMEPAGE= http://neb-stoehr.sourceforge.net/
COMMENT= 512 bytes/sector disklabel recalculation tool
NO_CONFIGURE= yes
diff --git a/neb-hdtoolbox/Makefile b/neb-hdtoolbox/Makefile
index d82f0424c1..e6eca7562d 100644
--- a/neb-hdtoolbox/Makefile
+++ b/neb-hdtoolbox/Makefile
@@ -7,8 +7,8 @@ CATEGORIES= sysutils
MASTER_SITES= http://binary.florian-stoehr.de/
EXTRACT_SUFX= .tgz
-MAINTAINER= netbsd%wolfnode.de@localhost
-HOMEPAGE= http://binary.florian-stoehr.de/
+MAINTAINER= netbsd%wolfnode.de@localhost
+HOMEPAGE= http://binary.florian-stoehr.de/
COMMENT= Tool for cross-partitioning a disk for NetBSD/amiga
NO_CONFIGURE= yes
diff --git a/necpp-git/Makefile b/necpp-git/Makefile
index 2c81fb118b..4f7dc92ba4 100644
--- a/necpp-git/Makefile
+++ b/necpp-git/Makefile
@@ -10,7 +10,7 @@ COMMENT= C++ rewrite of the Numerical Electromagnetics Code
LICENSE= gnu-gpl-v2
GIT_REPOSITORIES= necpp
-GIT_REPO.necpp= git://github.com/tmolteno/necpp.git
+GIT_REPO.necpp= git://github.com/tmolteno/necpp.git
WRKSRC= ${WRKDIR}/necpp
GNU_CONFIGURE= yes
diff --git a/nehe-opengl-tutorials/Makefile b/nehe-opengl-tutorials/Makefile
index 3bc39d63ed..1e2402ab9a 100644
--- a/nehe-opengl-tutorials/Makefile
+++ b/nehe-opengl-tutorials/Makefile
@@ -22,7 +22,7 @@ MAINTAINER= pkgsrc-users%NetBSD.org@localhost
HOMEPAGE= http://nehe.gamedev.net/
COMMENT= OpenGL tutorials from NeHe.gamedev.net - ${NEHE_OPENGL_TUT_FLAVOUR} versions
-DIST_SUBDIR= nehe-opengl-tutorials-${NEHE_OPENGL_TUT_FLAVOUR}
+DIST_SUBDIR= nehe-opengl-tutorials-${NEHE_OPENGL_TUT_FLAVOUR}
USE_TOOLS+= gmake pax
RESTRICTED= I am not sure if we can redistribute it
NO_SRC_ON_FTP= ${RESTRICTED}
diff --git a/nemo/Makefile b/nemo/Makefile
index d6f5bcdcf0..2f98e1cfda 100644
--- a/nemo/Makefile
+++ b/nemo/Makefile
@@ -18,9 +18,9 @@ COMMENT= File manager based on labels and timestamps
# for stetic
DEPENDS+= monodevelop-[0-9]*:../../devel/monodevelop
-USE_PKGLOCALEDIR= yes
-USE_LANGUAGES= # C#
-USE_TOOLS+= gmake msgfmt pkg-config
+USE_PKGLOCALEDIR= yes
+USE_LANGUAGES= # C#
+USE_TOOLS+= gmake msgfmt pkg-config
.include "../../lang/mono2/buildlink3.mk"
.include "../../x11/gnome-sharp/buildlink3.mk"
diff --git a/neovim-git/Makefile b/neovim-git/Makefile
index d57259621b..516c5d3fff 100644
--- a/neovim-git/Makefile
+++ b/neovim-git/Makefile
@@ -14,7 +14,7 @@ GIT_MODULE.neovim= neovim
WRKSRC= ${WRKDIR}/${GIT_MODULE.neovim}
# should follow the LuaJIT API compatibility
-LUA_VERSIONS_ACCEPTED=51
+LUA_VERSIONS_ACCEPTED= 51
USE_LANGUAGES= c c++
USE_CMAKE= yes
@@ -23,9 +23,9 @@ CONFIGURE_DIRS= ${WRKDIR}/build
CMAKE_ARG_PATH= ${WRKSRC}
CMAKE_ARGS+= -DCMAKE_BUILD_TYPE=RelWithDebInfo
-DEPENDS+= ${LUA_PKGPREFIX}-MessagePack-[0-9]*:../../wip/lua-MessagePack
-DEPENDS+= ${LUA_PKGPREFIX}-lpeg-[0-9]*:../../devel/lua-lpeg
-DEPENDS+= ${LUA_PKGPREFIX}-mpack-[0-9]*:../../wip/lua-mpack
+DEPENDS+= ${LUA_PKGPREFIX}-MessagePack-[0-9]*:../../wip/lua-MessagePack
+DEPENDS+= ${LUA_PKGPREFIX}-lpeg-[0-9]*:../../devel/lua-lpeg
+DEPENDS+= ${LUA_PKGPREFIX}-mpack-[0-9]*:../../wip/lua-mpack
post-extract:
${RUN} mkdir -p ${WRKDIR}/build
diff --git a/neovim-git/options.mk b/neovim-git/options.mk
index 2f13460ada..d7d6997ee5 100644
--- a/neovim-git/options.mk
+++ b/neovim-git/options.mk
@@ -10,7 +10,7 @@ PKG_SUGGESTED_OPTIONS= python ruby
### Support Python (add dependency)
###
. if !empty(PKG_OPTIONS:Mpython)
-DEPENDS+= ${PYPKGPREFIX}-neovim-[0-9]*:../../wip/py-neovim
+DEPENDS+= ${PYPKGPREFIX}-neovim-[0-9]*:../../wip/py-neovim
.include "../../lang/python/pyversion.mk"
. endif
@@ -19,7 +19,7 @@ DEPENDS+= ${PYPKGPREFIX}-neovim-[0-9]*:../../wip/py-neovim
### Support Ruby (add dependency)
###
. if !empty(PKG_OPTIONS:Mruby)
-DEPENDS+= ${RUBY_PKGPREFIX}-neovim-[0-9]*:../../wip/ruby-neovim
+DEPENDS+= ${RUBY_PKGPREFIX}-neovim-[0-9]*:../../wip/ruby-neovim
.include "../../lang/ruby/rubyversion.mk"
. endif
diff --git a/netatalk/Makefile b/netatalk/Makefile
index c0081d2c2c..f1f3d598ae 100644
--- a/netatalk/Makefile
+++ b/netatalk/Makefile
@@ -24,11 +24,11 @@ BUILDLINK_TRANSFORM+= l:db48:${BDB_TYPE}
PKG_CONFIG= yes
PKG_SYSCONFSUBDIR= netatalk
-EGDIR= ${PREFIX}/share/examples/netatalk
-#CONF_FILES= ${EGDIR}/afp.conf ${PKG_SYSCONFDIR}/afd.conf
-CONF_FILES+= ${DESTDIR}${EGDIR}/afp.conf ${PKG_SYSCONFDIR}/afp.conf
-CONF_FILES+= ${EGDIR}/extmap.conf ${PKG_SYSCONFDIR}/extmap.conf
-#CONF_FILES+= ${EGDIR}/netatalk-dbus.conf ${PKG_SYSCONFDIR}/netatalk-dbus.conf
+EGDIR= ${PREFIX}/share/examples/netatalk
+#CONF_FILES= ${EGDIR}/afp.conf ${PKG_SYSCONFDIR}/afd.conf
+CONF_FILES+= ${DESTDIR}${EGDIR}/afp.conf ${PKG_SYSCONFDIR}/afp.conf
+CONF_FILES+= ${EGDIR}/extmap.conf ${PKG_SYSCONFDIR}/extmap.conf
+#CONF_FILES+= ${EGDIR}/netatalk-dbus.conf ${PKG_SYSCONFDIR}/netatalk-dbus.conf
CONFLICTS= netatalk-asun-[0-9]* netatalk-umich-[0-9]*
@@ -52,7 +52,7 @@ CONFIGURE_ARGS+= --with-libevent-header=${BUILDLINK_PREFIX.libevent}/include
CONFIGURE_ARGS+= --with-libevent-lib=${BUILDLINK_PREFIX.libevent}/lib
CONFIGURE_ENV+= MACHINE_ARCH=${MACHINE_ARCH}
-CFLAGS.SunOS+= -I/usr/include/kerberosv5/
+CFLAGS.SunOS+= -I/usr/include/kerberosv5/
MAKE_DIRS+= ${PKG_SYSCONFDIR}/msg
diff --git a/netatalk/buildlink3.mk b/netatalk/buildlink3.mk
index 73ff5dc10e..6d3fd29e0f 100644
--- a/netatalk/buildlink3.mk
+++ b/netatalk/buildlink3.mk
@@ -7,8 +7,8 @@ NETATALK_BUILDLINK3_MK:=
BUILDLINK_API_DEPENDS.netatalk+= netatalk>=2.0.3nb2
BUILDLINK_ABI_DEPENDS.netatalk+= netatalk>=2.0.3nb3
-BUILDLINK_PKGSRCDIR.netatalk?= ../../net/netatalk
-BUILDLINK_DEPMETHOD.netatalk?= build
+BUILDLINK_PKGSRCDIR.netatalk?= ../../net/netatalk
+BUILDLINK_DEPMETHOD.netatalk?= build
.endif # NETATALK_BUILDLINK3_MK
BUILDLINK_TREE+= -netatalk
diff --git a/netkit-routed/Makefile b/netkit-routed/Makefile
index d5ca5daf5b..27ed46b456 100644
--- a/netkit-routed/Makefile
+++ b/netkit-routed/Makefile
@@ -16,6 +16,6 @@ HAS_CONFIGURE= yes
USE_TOOLS+= gmake
ONLY_FOR_PLATFORM= Linux-*-*
-CONFIGURE_ARGS+=--prefix=${PREFIX:Q}
+CONFIGURE_ARGS+= --prefix=${PREFIX:Q}
.include "../../mk/bsd.pkg.mk"
diff --git a/netkit-telnet/Makefile b/netkit-telnet/Makefile
index c83883546f..cf11366701 100644
--- a/netkit-telnet/Makefile
+++ b/netkit-telnet/Makefile
@@ -16,11 +16,11 @@ USE_LANGUAGES= c c++
USE_TOOLS+= gmake
ONLY_FOR_PLATFORM= Linux-*-*
-CONFIGURE_ARGS+=--prefix=${PREFIX:Q}
+CONFIGURE_ARGS+= --prefix=${PREFIX:Q}
-SUBST_CLASSES+= warn
-SUBST_STAGE.warn=pre-configure
-SUBST_FILES.warn=configure
-SUBST_SED.warn =-e s,^WARNINGS=,\#WARNINGS=,g
+SUBST_CLASSES+= warn
+SUBST_STAGE.warn= pre-configure
+SUBST_FILES.warn= configure
+SUBST_SED.warn = -e s,^WARNINGS=,\#WARNINGS=,g
.include "../../mk/bsd.pkg.mk"
diff --git a/netkit-tftp/PLIST b/netkit-tftp/PLIST
index 14f8356056..bd88f58c4a 100644
--- a/netkit-tftp/PLIST
+++ b/netkit-tftp/PLIST
@@ -1,5 +1,5 @@
@comment $NetBSD: PLIST,v 1.1.1.1 2005/05/23 17:19:11 poppnk Exp $
bin/tftp
-sbin/in.tftpd
man/man1/tftp.1
man/man8/tftpd.8
+sbin/in.tftpd
diff --git a/netlogo/Makefile b/netlogo/Makefile
index eb18db2432..4689a9dc1d 100644
--- a/netlogo/Makefile
+++ b/netlogo/Makefile
@@ -16,13 +16,14 @@ USE_LANGUAGES= # none
ONLY_FOR_PLATFORM= NetBSD-*-i386 NetBSD-*-x86_64 Linux-*-*
-INSTALLATION_DIRS= bin \
- lib/java/netlogo/lib \
- lib/java/netlogo \
- share/doc/netlogo \
- lib/java/netlogo/extensions \
- share/netlogo/icons \
- share/applications
+INSTALLATION_DIRS= \
+ bin \
+ lib/java/netlogo/lib \
+ lib/java/netlogo \
+ share/doc/netlogo \
+ lib/java/netlogo/extensions \
+ share/netlogo/icons \
+ share/applications
post-extract:
${CP} ${FILESDIR}/netlogo.desktop ${WRKSRC}
diff --git a/netwib/Makefile b/netwib/Makefile
index de5597cf5d..80d3de1672 100644
--- a/netwib/Makefile
+++ b/netwib/Makefile
@@ -12,7 +12,7 @@ HOMEPAGE= http://www.laurentconstantin.com/en/netw/
COMMENT= Network library providing network functionality for developers
-WRKSRC= ${WRKDIR}/${DISTNAME}/src
+WRKSRC= ${WRKDIR}/${DISTNAME}/src
HAS_CONFIGURE= YES
CONFIGURE_SCRIPT= ./genemake
ONLY_FOR_PLATFORM= NetBSD-*-i386
diff --git a/netwmpager/Makefile b/netwmpager/Makefile
index 80399bc2cf..46ef12e023 100644
--- a/netwmpager/Makefile
+++ b/netwmpager/Makefile
@@ -11,8 +11,8 @@ MAINTAINER= pkgsrc-users%NetBSD.org@localhost
COMMENT= EWMH (NetWM) compatible pager
LICENSE= gnu-gpl-v2
-HAS_CONFIGURE= yes
-USE_TOOLS+= gmake pkg-config
+HAS_CONFIGURE= yes
+USE_TOOLS+= gmake pkg-config
CONFIGURE_ARGS+= --prefix=${PREFIX}
CONFIGURE_ARGS+= --datadir=${PREFIX}/share/examples
diff --git a/netwox/Makefile b/netwox/Makefile
index 2d6cba9701..ab046cdf1a 100644
--- a/netwox/Makefile
+++ b/netwox/Makefile
@@ -12,7 +12,7 @@ HOMEPAGE= http://www.laurentconstantin.com/en/netw/
COMMENT= Toolbox that helps to find and solve network problems
-WRKSRC= ${WRKDIR}/${DISTNAME}/src
+WRKSRC= ${WRKDIR}/${DISTNAME}/src
HAS_CONFIGURE= YES
CONFIGURE_SCRIPT= ./genemake
ONLY_FOR_PLATFORM= NetBSD-*-i386
diff --git a/netx/Makefile b/netx/Makefile
index 414c12fa41..baec9ddba0 100644
--- a/netx/Makefile
+++ b/netx/Makefile
@@ -13,11 +13,11 @@ COMMENT= Free JNLP implementation
NO_BUILD= yes
-JAVA_APP_TARGETS= jnlp
-JAVA_APP_BIN.jnlp= netx
-JAVA_APP_MAIN.jnlp= netx.jnlp.runtime.Boot13
+JAVA_APP_TARGETS= jnlp
+JAVA_APP_BIN.jnlp= netx
+JAVA_APP_MAIN.jnlp= netx.jnlp.runtime.Boot13
JAVA_APP_CLASSPATH.jnlp= ${JAR_PREFIX}/netx-${VERSION}.jar
-JAVA_APP_PATH= ${DESTDIR}${PREFIX}/bin
+JAVA_APP_PATH= ${DESTDIR}${PREFIX}/bin
INSTALLATION_DIRS+= bin share/classpath
diff --git a/nicotine+/Makefile b/nicotine+/Makefile
index afe326df1d..d530a8429b 100644
--- a/nicotine+/Makefile
+++ b/nicotine+/Makefile
@@ -18,7 +18,7 @@ DEPENDS+= ${PYPKGPREFIX}-GeoIP>=0:../../net/py-GeoIP
PY_PATCHPLIST= yes
-PYDISTUTILSPKG= yes
+PYDISTUTILSPKG= yes
PYTHON_VERSIONS_INCOMPATIBLE= 34 35 36 # py-vorbis, py-gtk2
REPLACE_PYTHON= pynicotine/gtkgui/glade2py.py
diff --git a/nightfall/Makefile b/nightfall/Makefile
index defa066e08..607ffae76e 100644
--- a/nightfall/Makefile
+++ b/nightfall/Makefile
@@ -14,7 +14,7 @@ DEPENDS+= gnuplot>=4.6.0:../../graphics/gnuplot
GNU_CONFIGURE= yes
USE_PKGLOCALEDIR= yes
-USE_TOOLS+= bison perl msgfmt intltool
+USE_TOOLS+= bison perl msgfmt intltool
CONFIGURE_ARGS+= --with-included-gettext
diff --git a/nih-current/Makefile b/nih-current/Makefile
index bed3a114f4..c82cbc901c 100644
--- a/nih-current/Makefile
+++ b/nih-current/Makefile
@@ -37,7 +37,7 @@ REPLACE_INTERPRETER+= runawk
REPLACE.runawk.old= .*runawk
REPLACE.runawk.new= ${PREFIX}/bin/runawk
REPLACE_FILES.runawk= nih/pkg_update_plan.in nih/cmp2hr.in \
- nih/pkg_create_fake.in nih/analyse_conflicts.in
+ nih/pkg_create_fake.in nih/analyse_conflicts.in
MAKE_ENV+= VERSION=${_GIT_PKGVERSION:S/.//}
MAKE_ENV+= PKG_DBDIR=${PKG_DBDIR}
@@ -48,13 +48,13 @@ MAKE_ENV+= REAL_ROOT_GROUP=${REAL_ROOT_GROUP}
.if ${OPSYS} == NetBSD || ${OPSYS} == FreeBSD || ${OPSYS} == OpenBSD || \
${OPSYS} == DragonFly || ${OPSYS} == MirBSD
-FTP_CMD=/usr/bin/ftp
+FTP_CMD= /usr/bin/ftp
.else
-FTP_CMD=${PREFIX}/bin/ftp
+FTP_CMD= ${PREFIX}/bin/ftp
DEPENDS+= tnftp-[0-9]*:../../net/tnftp
.endif
-MAKE_ENV+= FTP=${FTP_CMD:Q} PKG_TOOLS_BIN=${PKG_TOOLS_BIN}
+MAKE_ENV+= FTP=${FTP_CMD:Q} PKG_TOOLS_BIN=${PKG_TOOLS_BIN}
.if ${OPSYS} =="SunOS" #&& empty(OS_VERSION:M5.11*)
REPLACE_SH+= nih/nih.in nih/pkg_status.in
diff --git a/nitrogen/Makefile b/nitrogen/Makefile
index d1ce0c7f06..eca98b1c1d 100644
--- a/nitrogen/Makefile
+++ b/nitrogen/Makefile
@@ -9,12 +9,12 @@ HOMEPAGE= http://projects.l3ib.org/nitrogen/
COMMENT= Background browser and setter
LICENSE= gnu-gpl-v2
-GNU_CONFIGURE= yes
-USE_LANGUAGES+= c c++
-USE_TOOLS+= bash pkg-config
-CONFIGURE_ARGS+=--disable-inotify
-CXXFLAGS+= -std=c++11
-GCC_REQD+= 4.9
+GNU_CONFIGURE= yes
+USE_LANGUAGES+= c c++
+USE_TOOLS+= bash pkg-config
+CONFIGURE_ARGS+= --disable-inotify
+CXXFLAGS+= -std=c++11
+GCC_REQD+= 4.9
REPLACE_BASH= data/icon-theme-installer
diff --git a/njb-sharp/buildlink3.mk b/njb-sharp/buildlink3.mk
index 1a274e50ba..87f015bec0 100644
--- a/njb-sharp/buildlink3.mk
+++ b/njb-sharp/buildlink3.mk
@@ -6,7 +6,7 @@ BUILDLINK_TREE+= njb-sharp
NJB_SHARP_BUILDLINK3_MK:=
BUILDLINK_API_DEPENDS.njb-sharp+= njb-sharp>=0.2.2
-BUILDLINK_PKGSRCDIR.njb-sharp?= ../../wip/njb-sharp
+BUILDLINK_PKGSRCDIR.njb-sharp?= ../../wip/njb-sharp
.include "../../wip/libnjb/buildlink3.mk"
diff --git a/nnrpd/PLIST b/nnrpd/PLIST
index 6f9d028a15..9e7fa09189 100644
--- a/nnrpd/PLIST
+++ b/nnrpd/PLIST
@@ -1,16 +1,15 @@
@comment $NetBSD: PLIST,v 1.4 2009/10/11 10:45:00 thomasklausner Exp $
libexec/filter_nnrpd.pl
-sbin/mailpost
-sbin/actived
-sbin/nnrpd
man/man3/dbz.3
-man/man5/nnrp.access.5
man/man5/moderators.5
+man/man5/nnrp.access.5
man/man8/nnrpd.8
+sbin/actived
+sbin/mailpost
+sbin/nnrpd
share/doc/nnrpd/CONTRIBUTORS
share/doc/nnrpd/COPYRIGHT
share/doc/nnrpd/HISTORY
-share/doc/nnrpd/Install.ms
share/doc/nnrpd/INN-faq_part1
share/doc/nnrpd/INN-faq_part2
share/doc/nnrpd/INN-faq_part3
@@ -20,6 +19,7 @@ share/doc/nnrpd/INN-faq_part6
share/doc/nnrpd/INN-faq_part7
share/doc/nnrpd/INN-faq_part8
share/doc/nnrpd/INN-faq_part9
+share/doc/nnrpd/Install.ms
share/doc/nnrpd/PGPKEYS
share/doc/nnrpd/README
share/doc/nnrpd/README.insync
@@ -29,6 +29,6 @@ share/examples/nnrpd/innshellvars
share/examples/nnrpd/innshellvars.csh
share/examples/nnrpd/innshellvars.pl
share/examples/nnrpd/innshellvars.tcl
-share/examples/nnrpd/nnrp.access
share/examples/nnrpd/moderators
+share/examples/nnrpd/nnrp.access
share/examples/rc.d/actived
diff --git a/nnrpd/options.mk b/nnrpd/options.mk
index b8fb9083e2..ed87936e6b 100644
--- a/nnrpd/options.mk
+++ b/nnrpd/options.mk
@@ -1,6 +1,6 @@
# $NetBSD: options.mk,v 1.1 2008/12/15 15:41:19 hfath Exp $
-PKG_OPTIONS_VAR= PKG_OPTIONS.nnrpd
+PKG_OPTIONS_VAR= PKG_OPTIONS.nnrpd
PKG_SUPPORTED_OPTIONS+= perl tcl gpg
PKG_SUGGESTED_OPTIONS+= # none
diff --git a/nongnu-libunwind-git/Makefile b/nongnu-libunwind-git/Makefile
index 840b2e3d64..c6553d295a 100644
--- a/nongnu-libunwind-git/Makefile
+++ b/nongnu-libunwind-git/Makefile
@@ -4,7 +4,7 @@ PKGNAME= nongnu-libunwind-1.1.0
CATEGORIES= lang devel
GIT_REPOSITORIES= libunwind
-GIT_REPO.libunwind= http://git.savannah.gnu.org/r/libunwind.git
+GIT_REPO.libunwind= http://git.savannah.gnu.org/r/libunwind.git
MAINTAINER= pkgsrc-users%NetBSD.org@localhost
HOMEPAGE= http://www.nongnu.org/libunwind/
diff --git a/nongnu-libunwind-git/buildlink3.mk b/nongnu-libunwind-git/buildlink3.mk
index d437d9adbd..5f24812370 100644
--- a/nongnu-libunwind-git/buildlink3.mk
+++ b/nongnu-libunwind-git/buildlink3.mk
@@ -6,7 +6,7 @@ BUILDLINK_TREE+= nongnu-libunwind
NONGNU_LIBUNWIND_BUILDLINK3_MK:=
BUILDLINK_API_DEPENDS.nongnu-libunwind+= non-libunwind>=1.1nb20151127
-BUILDLINK_PKGSRCDIR.nongnu-libunwind?= ../../wip/nongnu-libunwind-git
+BUILDLINK_PKGSRCDIR.nongnu-libunwind?= ../../wip/nongnu-libunwind-git
.endif # NONGNU_LIBUNWIND_BUILDLINK3_MK
diff --git a/nostromo/Makefile b/nostromo/Makefile
index 077d767061..c6512fccc1 100644
--- a/nostromo/Makefile
+++ b/nostromo/Makefile
@@ -1,42 +1,42 @@
# $NetBSD$
-DISTNAME= nostromo-1.9.5
-PKGREVISION= 2
-CATEGORIES= www
-MASTER_SITES= http://www.nazgul.ch/dev/
-DISTFILES= ${DISTNAME}${EXTRACT_SUFX}
-
-MAINTAINER= ast%NetBSD.org@localhost
-HOMEPAGE= http://www.nazgul.ch/dev_nostromo.html
-COMMENT= Fast, secure HTTP/1.1 CGI/1.1 SSL IPv4/IPv6 webserver
-LICENSE= modified-bsd
-
-USE_TOOLS+= sed
-USE_TOOLS+= perl
-REPLACE_PERL= htdocs/cgi-bin/printenv
-
-RCD_SCRIPTS= nostromo
-EGDIR= ${DESTDIR}/${PREFIX}/nostromo
-
-USR_LOCAL= /usr/local
-VAR_NOSTROMO= /var/nostromo
-
-INSTALLATION_DIRS= sbin
-INSTALLATION_DIRS+= var/nostromo
-INSTALLATION_DIRS+= ${PKGMANDIR}/man8
-INSTALLATION_DIRS+= ${EGDIR}
-INSTALLATION_DIRS+= ${EGDIR}/logs
-INSTALLATION_DIRS+= ${EGDIR}/icons
-INSTALLATION_DIRS+= ${EGDIR}/htdocs
-INSTALLATION_DIRS+= ${EGDIR}/htdocs/cgi-bin
-
-SUBST_CLASSES+= nostromo
-SUBST_FILES.nostromo= src/nhttpd/nhttpd.8 \
+DISTNAME= nostromo-1.9.5
+PKGREVISION= 2
+CATEGORIES= www
+MASTER_SITES= http://www.nazgul.ch/dev/
+DISTFILES= ${DISTNAME}${EXTRACT_SUFX}
+
+MAINTAINER= ast%NetBSD.org@localhost
+HOMEPAGE= http://www.nazgul.ch/dev_nostromo.html
+COMMENT= Fast, secure HTTP/1.1 CGI/1.1 SSL IPv4/IPv6 webserver
+LICENSE= modified-bsd
+
+USE_TOOLS+= sed
+USE_TOOLS+= perl
+REPLACE_PERL= htdocs/cgi-bin/printenv
+
+RCD_SCRIPTS= nostromo
+EGDIR= ${DESTDIR}/${PREFIX}/nostromo
+
+USR_LOCAL= /usr/local
+VAR_NOSTROMO= /var/nostromo
+
+INSTALLATION_DIRS= sbin
+INSTALLATION_DIRS+= var/nostromo
+INSTALLATION_DIRS+= ${PKGMANDIR}/man8
+INSTALLATION_DIRS+= ${EGDIR}
+INSTALLATION_DIRS+= ${EGDIR}/logs
+INSTALLATION_DIRS+= ${EGDIR}/icons
+INSTALLATION_DIRS+= ${EGDIR}/htdocs
+INSTALLATION_DIRS+= ${EGDIR}/htdocs/cgi-bin
+
+SUBST_CLASSES+= nostromo
+SUBST_FILES.nostromo= src/nhttpd/nhttpd.8 \
src/nhttpd/main.c \
conf/nhttpd.conf-dist
-SUBST_SED.nostromo+= -e 's,${VAR_NOSTROMO},${PREFIX}/nostromo,g'
-SUBST_SED.nostromo+= -e 's,${USR_LOCAL},${PREFIX},g'
-SUBST_STAGE.nostromo= post-patch
+SUBST_SED.nostromo+= -e 's,${VAR_NOSTROMO},${PREFIX}/nostromo,g'
+SUBST_SED.nostromo+= -e 's,${USR_LOCAL},${PREFIX},g'
+SUBST_STAGE.nostromo= post-patch
do-install:
${INSTALL_SCRIPT} ${WRKSRC}/src/nhttpd/nhttpd \
diff --git a/nrg4iso/Makefile b/nrg4iso/Makefile
index 810193be6b..27107c45d4 100644
--- a/nrg4iso/Makefile
+++ b/nrg4iso/Makefile
@@ -11,12 +11,12 @@ HOMEPAGE= http://code.google.com/p/nrg4iso/
COMMENT= Extracts data from a Nero Burning ROM image file
LICENSE= modified-bsd
-NO_CONFIGURE= yes
-WRKSRC= ${WRKDIR}/nrg4iso
+NO_CONFIGURE= yes
+WRKSRC= ${WRKDIR}/nrg4iso
BUILD_TARGET=
INSTALLATION_DIRS= bin
-SUBST_CLASSES+= nospec
+SUBST_CLASSES+= nospec
SUBST_STAGE.nospec= post-patch
SUBST_FILES.nospec= Makefile
SUBST_SED.nospec= -e 's/^CC/\#CC/g' -e 's/^CFLAGS/\#CFLAGS/g'
diff --git a/nsp/Makefile b/nsp/Makefile
index 2888d54a47..83c674ef89 100644
--- a/nsp/Makefile
+++ b/nsp/Makefile
@@ -14,7 +14,7 @@ LICENSE= gnu-gpl-v2
WRKSRC= ${WRKDIR}/nsp2
USE_PKGLOCALEDIR= yes
-USE_TOOLS+= pkg-config automake autoconf
+USE_TOOLS+= pkg-config automake autoconf
USE_LANGUAGES= c c++ fortran77
pre-configure:
diff --git a/nspr-hg/Makefile b/nspr-hg/Makefile
index 6845b383f0..db16036dca 100644
--- a/nspr-hg/Makefile
+++ b/nspr-hg/Makefile
@@ -14,14 +14,14 @@ LICENSE= mpl-2.0
HG_REPOSITORIES= nspr
HG_REPO.nspr= https://hg.mozilla.org/projects/nspr
-WRKSRC= ${WRKDIR}/nspr
+WRKSRC= ${WRKDIR}/nspr
#WRKSRC= ${WRKDIR}
-CHECK_PORTABILITY_SKIP+=${MOZILLA_DIR}js/src/configure
-CHECK_PORTABILITY_SKIP+=${MOZILLA_DIR}configure
+CHECK_PORTABILITY_SKIP+= ${MOZILLA_DIR}js/src/configure
+CHECK_PORTABILITY_SKIP+= ${MOZILLA_DIR}configure
GNU_CONFIGURE= yes
-GNU_CONFIGURE_LIBSUBDIR=nspr
+GNU_CONFIGURE_LIBSUBDIR= nspr
USE_GCC_RUNTIME= yes
USE_TOOLS+= autoconf gmake perl
@@ -40,7 +40,7 @@ SUBST_FILES.nspr-config= config/nspr-config.in
SUBST_SED.nspr-config= -e 's|-L$$libdir|"${COMPILER_RPATH_FLAG}$$libdir -L$$libdir"|g'
.if ${OPSYS} == "OpenBSD"
-CHECK_SHLIBS_SUPPORTED= no
+CHECK_SHLIBS_SUPPORTED= no
.endif
.if ${OPSYS} == "Darwin"
@@ -68,9 +68,9 @@ PLIST_VARS+= sun4u_32
. if defined(ABI) && ${ABI} == "64"
CONFIGURE_ARGS+= --enable-64bit
. else
-HW_CLASS!= ${UNAME} -m
+HW_CLASS!= ${UNAME} -m
. if ${HW_CLASS} == "sun4u"
-PLIST.sun4u_32= yes
+PLIST.sun4u_32= yes
. endif
. endif
.endif
diff --git a/nspr-hg/buildlink3.mk b/nspr-hg/buildlink3.mk
index b236c3f387..a67bfdef9d 100644
--- a/nspr-hg/buildlink3.mk
+++ b/nspr-hg/buildlink3.mk
@@ -8,9 +8,9 @@ NSPR_BUILDLINK3_MK:=
BUILDLINK_API_DEPENDS.nspr+= nspr>=4.10
BUILDLINK_PKGSRCDIR.nspr?= ../../wip/nspr-hg
-BUILDLINK_FILES.nspr+= lib/nspr/*
-BUILDLINK_FILES.nspr+= include/nspr/*
-BUILDLINK_FILES.nspr+= include/nspr/obsolete/*
+BUILDLINK_FILES.nspr+= lib/nspr/*
+BUILDLINK_FILES.nspr+= include/nspr/*
+BUILDLINK_FILES.nspr+= include/nspr/obsolete/*
BUILDLINK_LIBDIRS.nspr+= lib/nspr
BUILDLINK_RPATHDIRS.nspr+= lib/nspr
diff --git a/nss-hg/Makefile b/nss-hg/Makefile
index 785f1e51bf..ecb5f164a0 100644
--- a/nss-hg/Makefile
+++ b/nss-hg/Makefile
@@ -14,7 +14,7 @@ COMMENT= Libraries to support development of security-enabled applications (hg
LICENSE= mpl-2.0
HG_REPOSITORIES= nss
-HG_REPO.nss= https://hg.mozilla.org/projects/nss
+HG_REPO.nss= https://hg.mozilla.org/projects/nss
WRKSRC= ${WRKDIR}/nss
#WRKSRC= ${WRKDIR}
@@ -25,8 +25,8 @@ BUILDLINK_TRANSFORM+= rm:-Werror
# wants to use zlib before making sure it's built
MAKE_JOBS_SAFE= no
-CHECK_PORTABILITY_SKIP+=${MOZILLA_DIR}js/src/configure
-CHECK_PORTABILITY_SKIP+=${MOZILLA_DIR}configure
+CHECK_PORTABILITY_SKIP+= ${MOZILLA_DIR}js/src/configure
+CHECK_PORTABILITY_SKIP+= ${MOZILLA_DIR}configure
USE_GCC_RUNTIME= yes
USE_TOOLS+= gmake perl pax pkg-config
diff --git a/nss-pam-ldapd/Makefile b/nss-pam-ldapd/Makefile
index 7310a31066..9bf5aae923 100644
--- a/nss-pam-ldapd/Makefile
+++ b/nss-pam-ldapd/Makefile
@@ -92,19 +92,19 @@ PAM_LDAP_SONAME= pam_ldap.so
PLIST_SUBST+= PAM_LDAP_SONAME=${PAM_LDAP_SONAME:Q}
-SUBST_CLASSES+= fix-paths
-SUBST_STAGE.fix-paths= pre-configure
-SUBST_MESSAGE.fix-paths=Fixing config file path
-SUBST_FILES.fix-paths= man/*.[0-9] man/*.[0-9].xml
-SUBST_SED.fix-paths= -e 's|/etc/nslcd.conf|${PKG_SYSCONFDIR}/nslcd.conf|g'
+SUBST_CLASSES+= fix-paths
+SUBST_STAGE.fix-paths= pre-configure
+SUBST_MESSAGE.fix-paths= Fixing config file path
+SUBST_FILES.fix-paths= man/*.[0-9] man/*.[0-9].xml
+SUBST_SED.fix-paths= -e 's|/etc/nslcd.conf|${PKG_SYSCONFDIR}/nslcd.conf|g'
# Thread Local Storage seems not to work on NetBSD-4
.if !empty(MACHINE_PLATFORM:MNetBSD-[0-4].*-*)
-SUBST_CLASSES+= disable-tls
-SUBST_STAGE.disable-tls=post-configure
-SUBST_MESSAGE.disable-tls=disabling TLS
-SUBST_FILES.disable-tls=config.h
-SUBST_SED.disable-tls= -e 's|/\* \#undef __thread \*/|\#define __thread /\*\*/|'
+SUBST_CLASSES+= disable-tls
+SUBST_STAGE.disable-tls= post-configure
+SUBST_MESSAGE.disable-tls= disabling TLS
+SUBST_FILES.disable-tls= config.h
+SUBST_SED.disable-tls= -e 's|/\* \#undef __thread \*/|\#define __thread /\*\*/|'
.endif
SUBST_CLASSES+= usergroup
diff --git a/ntimed-git/Makefile b/ntimed-git/Makefile
index 620bf4cff4..938c1812d7 100644
--- a/ntimed-git/Makefile
+++ b/ntimed-git/Makefile
@@ -9,7 +9,7 @@ HOMEPAGE= https://github.com/bsdphk/Ntimed
COMMENT= Network Time Synchronization
GIT_REPOSITORIES= Ntimed
-GIT_REPO.Ntimed= git://github.com/bsdphk/Ntimed.git
+GIT_REPO.Ntimed= git://github.com/bsdphk/Ntimed.git
WRKSRC= ${WRKDIR}/Ntimed
GNU_CONFIGURE= yes
diff --git a/nuget-git/Makefile b/nuget-git/Makefile
index 94ff641f8c..51e6660785 100644
--- a/nuget-git/Makefile
+++ b/nuget-git/Makefile
@@ -1,7 +1,7 @@
# $NetBSD: Makefile,v 1.3 2015/04/25 10:01:54 krytarowski Exp $
GIT_REPOSITORIES= nuget
-GIT_REPO.nuget= https://github.com/NuGet/NuGet.Client.git
+GIT_REPO.nuget= https://github.com/NuGet/NuGet.Client.git
DISTNAME= nuget
PKGNAME= nuget-0.0.0
diff --git a/nullpop/Makefile b/nullpop/Makefile
index 9a19cc592b..886c6be605 100644
--- a/nullpop/Makefile
+++ b/nullpop/Makefile
@@ -11,6 +11,6 @@ COMMENT= POP3 server that allows logins, but never returns any email
GNU_CONFIGURE= yes
-CONFIGURE_ARGS+=--libexecdir="${PREFIX}/bin"
+CONFIGURE_ARGS+= --libexecdir="${PREFIX}/bin"
.include "../../mk/bsd.pkg.mk"
diff --git a/numactl/PLIST b/numactl/PLIST
index db32e45cf2..4b347958a0 100644
--- a/numactl/PLIST
+++ b/numactl/PLIST
@@ -5,8 +5,8 @@ bin/migspeed
bin/numactl
bin/numademo
bin/numastat
-include/numacompat1.h
include/numa.h
+include/numacompat1.h
include/numaif.h
lib/libnuma.la
man/man2/move_pages.2
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