R-VGAM: Update to 1.0-4

[Min Sik Kim <minskim%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Min Sik Kim <minskim%NetBSD.org@localhost>
Pushed By:	minskim
Date:		Mon Jan 22 11:06:12 2018 -0800
Changeset:	71ba09de71906a8434a609be7c98f8348cf459b0

Modified Files:
	R-VGAM/Makefile
	R-VGAM/distinfo

Log Message:
R-VGAM: Update to 1.0-4

New features since 1.0-2:
    o   This package is now Renjin compatible.
    o   gengamma.stacy() handles multiple responses, and some
        of its arguments have had their default values changed.
    o   calibrate() has a methods function for "rrvglm" objects.
    o   "vglm" objects have a new "hadof" slot.
    o   "vglm" objects will soon have a new "charfun" slot.
    o   constraints(vglmfit, matrix = TRUE) is now embellished by
        rownames, by default.
    o   New generic and methods function: hdeff(), lrp().
    o   Many link functions accommodate 'deriv = 3' and sometimes a bit
        higher. More safety when 'deriv' is assigned out-of-range values.
    o   fitted() and predict() with lms.???() fits, such as lms.bcn(),
        now handles inputting new 'percentiles' values. Thanks to
        Sven Garbade for picking up this obvious deficiency.
    o   New function(s): d3theta.deta3().
    o   vgam() with sm.os() and sm.ps() terms allows G2-VGAMs to be fitted.
    o   plotvgam() has a "shade" argument.
    o   Almost all family functions have been "validparams"-enabled, for
        greater reliability.
    o   confint() implements the profile likelihood method (in addition
        to the Wald method).
    o   New family functions: diffzeta(dpqr),
        oilog(dpqr), oiposbinomial(dpqr), oizeta(dpqr),  oizipf(dpqr),
        otlog(dpqr), otpospoisson(dpqr), otzeta(dpqr),
        oalog(dpqr), oapospoisson(dpqr), oazeta(dpqr), topple(dpqr).
    o   New functions: [pqr]zeta(), [qr]zipf().
    o   Argument 'zero' now accepts "" or NA and interprets these as NULL,
        i.e., no linear or additive predictors are intercept-only.
    o   Significance stars added to summary(rrvglm.object), for very crude
        inference.
    o   zeta() can return the Hurwitz zeta function, via the 'shift' argument.
    o   show.summary.vglm() will only print out any dispersion parameter
        that is not equal to 1.
    o   type.fitted = "quantiles" is available for
        gevff(), negbinomial(), poissonff().

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=71ba09de71906a8434a609be7c98f8348cf459b0

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 R-VGAM/Makefile | 4 ++--
 R-VGAM/distinfo | 8 ++++----
 2 files changed, 6 insertions(+), 6 deletions(-)

diffs:
diff --git a/R-VGAM/Makefile b/R-VGAM/Makefile
index 2a65cd2595..2750694542 100644
--- a/R-VGAM/Makefile
+++ b/R-VGAM/Makefile
@@ -9,11 +9,11 @@ COMMENT=	Vector Generalized Linear and Additive Models
 LICENSE=	gnu-gpl-v2
 
 R_PKGNAME=	VGAM
-R_PKGVER=	1.0-2
+R_PKGVER=	1.0-4
 
 USE_LANGUAGES=	c fortran
 
-BUILDLINK_API_DEPENDS.R+=	R>=2.15.1
+BUILDLINK_API_DEPENDS.R+=	R>=3.4.0
 
 .include "../../math/R/Makefile.extension"
 .include "../../devel/gettext-lib/buildlink3.mk"
diff --git a/R-VGAM/distinfo b/R-VGAM/distinfo
index 4a95d852b3..19ffc855f8 100644
--- a/R-VGAM/distinfo
+++ b/R-VGAM/distinfo
@@ -1,6 +1,6 @@
 $NetBSD: distinfo,v 1.3 2013/06/12 17:37:31 bubuchka Exp $
 
-SHA1 (R/VGAM_1.0-2.tar.gz) = e305cc01cf9688cecd5b7ac04eef092adb2a1aa7
-RMD160 (R/VGAM_1.0-2.tar.gz) = 17a4bcfe2b614dcccf9cc670c10d02311bf6c2ef
-SHA512 (R/VGAM_1.0-2.tar.gz) = 4c16e54f7a0da69da8b5511f178d7f91262342ad122b1b947283a4f02ec1c03761a73e45d35e03cafcda7c2480e69e94db53c14e1e0dd588976bb3663b8bf507
-Size (R/VGAM_1.0-2.tar.gz) = 2447418 bytes
+SHA1 (R/VGAM_1.0-4.tar.gz) = f52f70a01e37042f82a7272d8198e1a80fecb88d
+RMD160 (R/VGAM_1.0-4.tar.gz) = b5448508408504b8fed0d1763cfe102b5c7e6a24
+SHA512 (R/VGAM_1.0-4.tar.gz) = ccbcb9273de4ff4150577d4ab5eff751ccc350dd1e6d109fed4b37d3f55c641aee6b4e5fda1b0e6df41d94fadf50a886cca7f67daab6b49d919f666b408cf74e
+Size (R/VGAM_1.0-4.tar.gz) = 1374748 bytes