'Add fastahack: Utilities for indexing and sequence extraction from FASTA files'

[Jason Bacon <bacon@centosdev.local>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon@centosdev.local>
Pushed By:	outpaddling
Date:		Thu Mar 30 20:19:35 2017 -0500
Changeset:	e000a0c4b2fcc2f69ea73937e877956834af0d42

Modified Files:
	Makefile
Added Files:
	fastahack/DESCR
	fastahack/Makefile
	fastahack/PLIST
	fastahack/TODO
	fastahack/buildlink3.mk
	fastahack/distinfo

Log Message:
'Add fastahack: 	Utilities for indexing and sequence extraction from FASTA files'

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=e000a0c4b2fcc2f69ea73937e877956834af0d42

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 Makefile                |  1 +
 fastahack/DESCR         |  1 +
 fastahack/Makefile      | 26 ++++++++++++++++++++++++++
 fastahack/PLIST         |  8 ++++++++
 fastahack/TODO          |  1 +
 fastahack/buildlink3.mk | 12 ++++++++++++
 fastahack/distinfo      |  6 ++++++
 7 files changed, 55 insertions(+)

diffs:
diff --git a/Makefile b/Makefile
index 1ecfbea75e..66592b5063 100644
--- a/Makefile
+++ b/Makefile
@@ -714,6 +714,7 @@ SUBDIR+=	farsi-ttf
 SUBDIR+=	fasm
 SUBDIR+=	fasta
 SUBDIR+=	fastbit
+SUBDIR+=	fasthack
 SUBDIR+=	fastjet
 SUBDIR+=	fastool
 SUBDIR+=	fastrpc
diff --git a/fastahack/DESCR b/fastahack/DESCR
new file mode 100644
index 0000000000..6118346ce4
--- /dev/null
+++ b/fastahack/DESCR
@@ -0,0 +1 @@
+Utilities for indexing and sequence extraction from FASTA files.
diff --git a/fastahack/Makefile b/fastahack/Makefile
new file mode 100644
index 0000000000..1e093448a4
--- /dev/null
+++ b/fastahack/Makefile
@@ -0,0 +1,26 @@
+# $NetBSD$
+#
+###########################################################
+#               Generated by fbsd2pkg                     #
+###########################################################
+
+DISTNAME=	fastahack-${PORTVERSION}
+CATEGORIES=	biology
+MASTER_SITES=	${MASTER_SITE_GITHUB:=outpaddling/}
+GITHUB_TAG=	${PORTVERSION}
+
+MAINTAINER=	bacon4000%gmail.com@localhost
+HOMEPAGE=	https://github.com/ekg/fastahack
+COMMENT=	Utilities for indexing and sequence extraction from FASTA files
+LICENSE=	gnu-gpl-v2
+
+# Test and change if necessary.
+# MAKE_JOBS_SAFE=	no
+
+# Just assuming C and C++: Adjust this!
+USE_LANGUAGES=	c c++
+INSTALL_TARGET=	install-strip
+
+PORTVERSION=	18ed4b86ef962fa1b40f89b78625b2f271d9b155
+
+.include "../../mk/bsd.pkg.mk"
diff --git a/fastahack/PLIST b/fastahack/PLIST
new file mode 100644
index 0000000000..f577f4752e
--- /dev/null
+++ b/fastahack/PLIST
@@ -0,0 +1,8 @@
+@comment $NetBSD$
+bin/fastahack
+include/fastahack/Fasta.h
+include/fastahack/LargeFileSupport.h
+include/fastahack/Region.h
+include/fastahack/disorder.h
+include/fastahack/split.h
+lib/libfastahack.a
diff --git a/fastahack/TODO b/fastahack/TODO
new file mode 100644
index 0000000000..b687356e6b
--- /dev/null
+++ b/fastahack/TODO
@@ -0,0 +1 @@
+Clean up and test
diff --git a/fastahack/buildlink3.mk b/fastahack/buildlink3.mk
new file mode 100644
index 0000000000..8d5b2b2bc5
--- /dev/null
+++ b/fastahack/buildlink3.mk
@@ -0,0 +1,12 @@
+# $NetBSD$
+
+BUILDLINK_TREE+=	fastahack
+
+.if !defined(FASTAHACK_BUILDLINK3_MK)
+FASTAHACK_BUILDLINK3_MK:=
+
+BUILDLINK_API_DEPENDS.fastahack+=	fastahack>=18ed4b86ef962fa1b40f89b78625b2f271d9b155
+BUILDLINK_PKGSRCDIR.fastahack?=	../../wip/fastahack
+.endif	# FASTAHACK_BUILDLINK3_MK
+
+BUILDLINK_TREE+=	-fastahack
diff --git a/fastahack/distinfo b/fastahack/distinfo
new file mode 100644
index 0000000000..5327545355
--- /dev/null
+++ b/fastahack/distinfo
@@ -0,0 +1,6 @@
+$NetBSD$
+
+SHA1 (fastahack-18ed4b86ef962fa1b40f89b78625b2f271d9b155-18ed4b86ef962fa1b40f89b78625b2f271d9b155.tar.gz) = 62184e06d5d76e795987ca8910635bf9c44da2be
+RMD160 (fastahack-18ed4b86ef962fa1b40f89b78625b2f271d9b155-18ed4b86ef962fa1b40f89b78625b2f271d9b155.tar.gz) = 8705c9e1d359d872b4c1955ab454eaf107a2d408
+SHA512 (fastahack-18ed4b86ef962fa1b40f89b78625b2f271d9b155-18ed4b86ef962fa1b40f89b78625b2f271d9b155.tar.gz) = 28012a0c4acd406b3e982b61f9096fc1068f2e8a6b65a27dc4050b83251cdddddf3fe2e0ad7862b761aa78f81f850504347b5781fb567491388446646e8ba067
+Size (fastahack-18ed4b86ef962fa1b40f89b78625b2f271d9b155-18ed4b86ef962fa1b40f89b78625b2f271d9b155.tar.gz) = 17724 bytes