cd-hit: Rename to cdhit to match Github project name.

To: pkgsrc-wip-changes%NetBSD.org@localhost
Subject: cd-hit: Rename to cdhit to match Github project name.
From: Jason Bacon <jwbacon%tds.net@localhost>
Date: Wed, 30 Sep 2015 16:56:13 +0000
Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <jwbacon%tds.net@localhost>
Pushed By:	outpaddling
Date:		Wed Sep 30 11:56:13 2015 -0500
Changeset:	1aa0ac1ea225b70d7759773f1ccfccab704ecc80

Added Files:
	cdhit/DESCR
	cdhit/Makefile
	cdhit/PLIST
	cdhit/distinfo
Removed Files:
	cd-hit/DESCR
	cd-hit/Makefile
	cd-hit/PLIST
	cd-hit/distinfo

Log Message:
cd-hit: Rename to cdhit to match Github project name.

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=1aa0ac1ea225b70d7759773f1ccfccab704ecc80

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 cd-hit/DESCR    |  2 --
 cd-hit/Makefile | 38 --------------------------------------
 cd-hit/PLIST    | 34 ----------------------------------
 cd-hit/distinfo |  5 -----
 cdhit/DESCR     |  2 ++
 cdhit/Makefile  | 38 ++++++++++++++++++++++++++++++++++++++
 cdhit/PLIST     | 34 ++++++++++++++++++++++++++++++++++
 cdhit/distinfo  |  5 +++++
 8 files changed, 79 insertions(+), 79 deletions(-)

diffs:
diff --git a/cd-hit/DESCR b/cd-hit/DESCR
deleted file mode 100644
index 06848d6..0000000
--- a/cd-hit/DESCR
+++ /dev/null
@@ -1,2 +0,0 @@
-CD-HIT is a very widely used program for clustering and comparing protein or
-nucleotide sequences.
diff --git a/cd-hit/Makefile b/cd-hit/Makefile
deleted file mode 100644
index 2a25754..0000000
--- a/cd-hit/Makefile
+++ /dev/null
@@ -1,38 +0,0 @@
-# $NetBSD: Makefile,v 1.1 2015/09/18 13:44:08 outpaddling Exp $
-#
-###########################################################
-#               Generated by fbsd2pkg                     #
-###########################################################
-
-DISTNAME=	cdhit-4.6.4
-CATEGORIES=	biology
-MASTER_SITES=	${MASTER_SITE_GITHUB:=weizhongli/}
-
-MAINTAINER=	jwbacon%tds.net@localhost
-HOMEPAGE=	http://weizhong-lab.ucsd.edu/cd-hit/
-COMMENT=	Clustering and comparing protein or nucleotide sequences
-LICENSE=	gnu-gpl-v2
-
-USE_LANGUAGES=	c++
-USE_TOOLS+=	bash:run gmake perl
-REPLACE_PERL=	*.pl
-GITHUB_TAG=	V${PKGVERSION}
-
-# Restore default overridden by GITHUB_TAG
-WRKSRC=		${WRKDIR}/${DISTNAME}
-
-SUBST_CLASSES+=		compiler
-SUBST_STAGE.compiler=	post-patch
-SUBST_FILES.compiler=	${WRKSRC}/${MAKE_FILE}
-SUBST_SED.compiler=	-e 's|g++|${CXX:Q}|g'
-
-SUBST_CLASSES+=		bash
-SUBST_STAGE.bash=	post-patch
-SUBST_FILES.bash=	${WRKSRC}/cd-hit-2d-para.pl ${WRKSRC}/cd-hit-para.pl
-SUBST_SED.bash=		-e 's|/bin/bash|${PREFIX}/bin/bash|g'
-
-MAKE_FLAGS+=		openmp=yes PREFIX=${DESTDIR}${PREFIX}/bin
-
-INSTALLATION_DIRS=	bin
-
-.include "../../mk/bsd.pkg.mk"
diff --git a/cd-hit/PLIST b/cd-hit/PLIST
deleted file mode 100644
index 1eeaec8..0000000
--- a/cd-hit/PLIST
+++ /dev/null
@@ -1,34 +0,0 @@
-@comment $NetBSD: PLIST,v 1.1 2015/09/18 13:44:08 outpaddling Exp $
-bin/cd-hit
-bin/cd-hit-2d
-bin/cd-hit-2d-para.pl
-bin/cd-hit-454
-bin/cd-hit-div
-bin/cd-hit-div.pl
-bin/cd-hit-est
-bin/cd-hit-est-2d
-bin/cd-hit-para.pl
-bin/clstr2tree.pl
-bin/clstr2txt.pl
-bin/clstr2xml.pl
-bin/clstr_cut.pl
-bin/clstr_merge.pl
-bin/clstr_merge_noorder.pl
-bin/clstr_quality_eval.pl
-bin/clstr_quality_eval_by_link.pl
-bin/clstr_reduce.pl
-bin/clstr_renumber.pl
-bin/clstr_rep.pl
-bin/clstr_reps_faa_rev.pl
-bin/clstr_rev.pl
-bin/clstr_select.pl
-bin/clstr_select_rep.pl
-bin/clstr_size_histogram.pl
-bin/clstr_size_stat.pl
-bin/clstr_sort_by.pl
-bin/clstr_sort_prot_by.pl
-bin/clstr_sql_tbl.pl
-bin/clstr_sql_tbl_sort.pl
-bin/make_multi_seq.pl
-bin/plot_2d.pl
-bin/plot_len1.pl
diff --git a/cd-hit/distinfo b/cd-hit/distinfo
deleted file mode 100644
index d94bff4..0000000
--- a/cd-hit/distinfo
+++ /dev/null
@@ -1,5 +0,0 @@
-$NetBSD$
-
-SHA1 (cdhit-4.6.4.tar.gz) = 3606a8200e62ac60c9dd782a57bec426256e6fa8
-RMD160 (cdhit-4.6.4.tar.gz) = a94a29103393dded87000173d8eb4ec1a1e0614f
-Size (cdhit-4.6.4.tar.gz) = 1148426 bytes
diff --git a/cdhit/DESCR b/cdhit/DESCR
new file mode 100644
index 0000000..06848d6
--- /dev/null
+++ b/cdhit/DESCR
@@ -0,0 +1,2 @@
+CD-HIT is a very widely used program for clustering and comparing protein or
+nucleotide sequences.
diff --git a/cdhit/Makefile b/cdhit/Makefile
new file mode 100644
index 0000000..2a25754
--- /dev/null
+++ b/cdhit/Makefile
@@ -0,0 +1,38 @@
+# $NetBSD: Makefile,v 1.1 2015/09/18 13:44:08 outpaddling Exp $
+#
+###########################################################
+#               Generated by fbsd2pkg                     #
+###########################################################
+
+DISTNAME=	cdhit-4.6.4
+CATEGORIES=	biology
+MASTER_SITES=	${MASTER_SITE_GITHUB:=weizhongli/}
+
+MAINTAINER=	jwbacon%tds.net@localhost
+HOMEPAGE=	http://weizhong-lab.ucsd.edu/cd-hit/
+COMMENT=	Clustering and comparing protein or nucleotide sequences
+LICENSE=	gnu-gpl-v2
+
+USE_LANGUAGES=	c++
+USE_TOOLS+=	bash:run gmake perl
+REPLACE_PERL=	*.pl
+GITHUB_TAG=	V${PKGVERSION}
+
+# Restore default overridden by GITHUB_TAG
+WRKSRC=		${WRKDIR}/${DISTNAME}
+
+SUBST_CLASSES+=		compiler
+SUBST_STAGE.compiler=	post-patch
+SUBST_FILES.compiler=	${WRKSRC}/${MAKE_FILE}
+SUBST_SED.compiler=	-e 's|g++|${CXX:Q}|g'
+
+SUBST_CLASSES+=		bash
+SUBST_STAGE.bash=	post-patch
+SUBST_FILES.bash=	${WRKSRC}/cd-hit-2d-para.pl ${WRKSRC}/cd-hit-para.pl
+SUBST_SED.bash=		-e 's|/bin/bash|${PREFIX}/bin/bash|g'
+
+MAKE_FLAGS+=		openmp=yes PREFIX=${DESTDIR}${PREFIX}/bin
+
+INSTALLATION_DIRS=	bin
+
+.include "../../mk/bsd.pkg.mk"
diff --git a/cdhit/PLIST b/cdhit/PLIST
new file mode 100644
index 0000000..1eeaec8
--- /dev/null
+++ b/cdhit/PLIST
@@ -0,0 +1,34 @@
+@comment $NetBSD: PLIST,v 1.1 2015/09/18 13:44:08 outpaddling Exp $
+bin/cd-hit
+bin/cd-hit-2d
+bin/cd-hit-2d-para.pl
+bin/cd-hit-454
+bin/cd-hit-div
+bin/cd-hit-div.pl
+bin/cd-hit-est
+bin/cd-hit-est-2d
+bin/cd-hit-para.pl
+bin/clstr2tree.pl
+bin/clstr2txt.pl
+bin/clstr2xml.pl
+bin/clstr_cut.pl
+bin/clstr_merge.pl
+bin/clstr_merge_noorder.pl
+bin/clstr_quality_eval.pl
+bin/clstr_quality_eval_by_link.pl
+bin/clstr_reduce.pl
+bin/clstr_renumber.pl
+bin/clstr_rep.pl
+bin/clstr_reps_faa_rev.pl
+bin/clstr_rev.pl
+bin/clstr_select.pl
+bin/clstr_select_rep.pl
+bin/clstr_size_histogram.pl
+bin/clstr_size_stat.pl
+bin/clstr_sort_by.pl
+bin/clstr_sort_prot_by.pl
+bin/clstr_sql_tbl.pl
+bin/clstr_sql_tbl_sort.pl
+bin/make_multi_seq.pl
+bin/plot_2d.pl
+bin/plot_len1.pl
diff --git a/cdhit/distinfo b/cdhit/distinfo
new file mode 100644
index 0000000..d94bff4
--- /dev/null
+++ b/cdhit/distinfo
@@ -0,0 +1,5 @@
+$NetBSD$
+
+SHA1 (cdhit-4.6.4.tar.gz) = 3606a8200e62ac60c9dd782a57bec426256e6fa8
+RMD160 (cdhit-4.6.4.tar.gz) = a94a29103393dded87000173d8eb4ec1a1e0614f
+Size (cdhit-4.6.4.tar.gz) = 1148426 bytes
Prev by Date: cd-hit: Clean up github fetch, replace patch with MAKE_FLAGS.
Next by Date: bwa: Remove unnecessary buildlink3.mk.
Previous by Thread: cd-hit: Clean up github fetch, replace patch with MAKE_FLAGS.
Next by Thread: bwa: Remove unnecessary buildlink3.mk.
Indexes:
Home | Main Index | Thread Index | Old Index