CVS commit: pkgsrc/math/py-numpy

["Adam Ciarcinski" <adam%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   adam
Date:           Mon Aug 17 09:27:50 UTC 2026

Modified Files:
        pkgsrc/math/py-numpy: Makefile PLIST distinfo
Added Files:
        pkgsrc/math/py-numpy/patches:
            patch-numpy___core_src_multiarray_arrayobject.c
            patch-numpy___core_src_umath_ufunc__object.c

Log Message:
py-numpy: updated to 2.5.2

2.5.2

MAINT: Prepare 2.5.x for further development
TYP: Backport multiple static typing fixes 1.
TST: add tests for stable ABI numpy extensions
BUG: fix ``StringDType`` coerce flag in binary ufunc promotion...
BLD: fix meson deprecation warnings
TYP: Backport multiple typing fixes 2.
MAINT: Update x86-simd-sort subproject (5adb334 → fa944ef)
BUG: fix crash on 32 bit systems using abi3t
MNT: remove some obsolete string to bool workarounds
BUG: centralized helper for output coerce and na_object in stringdtype...
BUG: fix CPU feature env diagnostic buffer overruns
BUG: restore ndarray.conjugate() for legacy user-defined dtypes...
TYP: Avoid shadowed dtype annotations
MAINT: Update verdored-meson/meson to match main.
BUG: fix refcount leak on overlapping copyto with where=False
BUG: fix swallowed cast error in fancy indexing assignment
BUG: Fix buffered iterator stride after removing multi-index
BUG: fix ``np.fromiter`` corruption when reusing a ``StringDType``...
BUG: add a special case for StringDType in np.isdtype
BUG: reference leak in ``simd_sequence_from_iterable``
BUG: ensure lock is held when accessing or writing to RNG state...
BUG: fully reset cached RNG state for non-MT19937 RNGs
TYP: type capabilities max dimensions
BUG: avoid possible stack overflow in arraydescr_dealloc
MAINT: Update cibuildwheel to v4.2.0
MAINT: Skip limited_api tests on some platforms.
TYP: ``isclose`` shape-typing fix for 2d array-likes
BUG: avoid segfaults when legacy copyswap slot is not defined...


To generate a diff of this commit:
cvs rdiff -u -r1.155 -r1.156 pkgsrc/math/py-numpy/Makefile
cvs rdiff -u -r1.60 -r1.61 pkgsrc/math/py-numpy/PLIST
cvs rdiff -u -r1.117 -r1.118 pkgsrc/math/py-numpy/distinfo
cvs rdiff -u -r0 -r1.1 \
    pkgsrc/math/py-numpy/patches/patch-numpy___core_src_multiarray_arrayobject.c \
    pkgsrc/math/py-numpy/patches/patch-numpy___core_src_umath_ufunc__object.c

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/py-numpy/Makefile
diff -u pkgsrc/math/py-numpy/Makefile:1.155 pkgsrc/math/py-numpy/Makefile:1.156
--- pkgsrc/math/py-numpy/Makefile:1.155 Mon Jul 13 04:17:54 2026
+++ pkgsrc/math/py-numpy/Makefile       Mon Aug 17 09:27:49 2026
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.155 2026/07/13 04:17:54 wiz Exp $
+# $NetBSD: Makefile,v 1.156 2026/08/17 09:27:49 adam Exp $
 
-DISTNAME=      numpy-2.5.1
+DISTNAME=      numpy-2.5.2
 PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
 CATEGORIES=    math python
 MASTER_SITES=  ${MASTER_SITE_PYPI:=n/numpy/}

Index: pkgsrc/math/py-numpy/PLIST
diff -u pkgsrc/math/py-numpy/PLIST:1.60 pkgsrc/math/py-numpy/PLIST:1.61
--- pkgsrc/math/py-numpy/PLIST:1.60     Sun Jun 28 15:40:18 2026
+++ pkgsrc/math/py-numpy/PLIST  Mon Aug 17 09:27:49 2026
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.60 2026/06/28 15:40:18 wiz Exp $
+@comment $NetBSD: PLIST,v 1.61 2026/08/17 09:27:49 adam Exp $
 bin/f2py-${PYVERSSUFFIX}
 bin/numpy-config-${PYVERSSUFFIX}
 ${PYSITELIB}/${WHEEL_INFODIR}/METADATA
@@ -226,10 +226,8 @@ ${PYSITELIB}/numpy/_core/tests/examples/
 ${PYSITELIB}/numpy/_core/tests/examples/cython/setup.py
 ${PYSITELIB}/numpy/_core/tests/examples/cython/setup.pyc
 ${PYSITELIB}/numpy/_core/tests/examples/cython/setup.pyo
-${PYSITELIB}/numpy/_core/tests/examples/limited_api/limited_api1.c
-${PYSITELIB}/numpy/_core/tests/examples/limited_api/limited_api2.pyx
-${PYSITELIB}/numpy/_core/tests/examples/limited_api/limited_api_latest.c
-${PYSITELIB}/numpy/_core/tests/examples/limited_api/limited_api_opaque.c
+${PYSITELIB}/numpy/_core/tests/examples/limited_api/limited_api.c
+${PYSITELIB}/numpy/_core/tests/examples/limited_api/limited_api_cython.pyx
 ${PYSITELIB}/numpy/_core/tests/examples/limited_api/meson.build
 ${PYSITELIB}/numpy/_core/tests/examples/limited_api/setup.py
 ${PYSITELIB}/numpy/_core/tests/examples/limited_api/setup.pyc

Index: pkgsrc/math/py-numpy/distinfo
diff -u pkgsrc/math/py-numpy/distinfo:1.117 pkgsrc/math/py-numpy/distinfo:1.118
--- pkgsrc/math/py-numpy/distinfo:1.117 Mon Jul  6 07:11:59 2026
+++ pkgsrc/math/py-numpy/distinfo       Mon Aug 17 09:27:49 2026
@@ -1,9 +1,11 @@
-$NetBSD: distinfo,v 1.117 2026/07/06 07:11:59 wiz Exp $
+$NetBSD: distinfo,v 1.118 2026/08/17 09:27:49 adam Exp $
 
-BLAKE2s (numpy-2.5.1.tar.gz) = 1c173220f43bd37043ccaf322f9bb76c547d4d018c7fe610f3e35a9536ef83ad
-SHA512 (numpy-2.5.1.tar.gz) = cbb1f844bc7feb845de24c4951bc378b0d4d96a1ac7eaa9fe1f615aaf470f33c81e94fddbbd83f555b7d9248b5db60b641a4582b9f39b0f6d906f7a8acdd7add
-Size (numpy-2.5.1.tar.gz) = 20755553 bytes
+BLAKE2s (numpy-2.5.2.tar.gz) = 5d85089a4c6f2305bc7ccdcecf01b29ec11a485bb7d52f6f1a12974342619e2f
+SHA512 (numpy-2.5.2.tar.gz) = 30d0581b90a88f80de49202e9dace7605363e66d1141229cc85a4aef5aad185de4d24820cb7ec8e8860b1e2c593b7795649675ef850d35ef3883b386b5381231
+Size (numpy-2.5.2.tar.gz) = 20773161 bytes
 SHA1 (patch-numpy___core_feature__detection__misc.h) = c0f4d318c93fcd0e36c34c549c7778350b8a6ea5
 SHA1 (patch-numpy___core_include_numpy_npy__common.h) = 175cd8f64af681949c3e8bfde064c93908433ea2
+SHA1 (patch-numpy___core_src_multiarray_arrayobject.c) = df6b7998b2321b01d7e7534e917745a479d96d0c
 SHA1 (patch-numpy___core_src_npymath_npy__math.c) = b28f1a9730d98a18b2f4f97c1c356ca8ad80903d
+SHA1 (patch-numpy___core_src_umath_ufunc__object.c) = 161e7631f95c5b9557fcb05c4ea9daa7f7f884e7
 SHA1 (patch-numpy_linalg_lapack__litemodule.c) = e97ec871c2f33c3121b3c8471a9e5a74c3c798c8

Added files:

Index: pkgsrc/math/py-numpy/patches/patch-numpy___core_src_multiarray_arrayobject.c
diff -u /dev/null pkgsrc/math/py-numpy/patches/patch-numpy___core_src_multiarray_arrayobject.c:1.1
--- /dev/null   Mon Aug 17 09:27:50 2026
+++ pkgsrc/math/py-numpy/patches/patch-numpy___core_src_multiarray_arrayobject.c        Mon Aug 17 09:27:49 2026
@@ -0,0 +1,29 @@
+$NetBSD: patch-numpy___core_src_multiarray_arrayobject.c,v 1.1 2026/08/17 09:27:49 adam Exp $
+
+Avoid static_assert in C.
+
+--- numpy/_core/src/multiarray/arrayobject.c.orig      2026-08-14 12:32:59.056345672 +0000
++++ numpy/_core/src/multiarray/arrayobject.c
+@@ -1296,22 +1296,8 @@ NPY_NO_EXPORT PyTypeObject PyArray_Type
+  * We can choose that this is fine or increase the padding to 16/max_align_t when it happens.
+  * (See comments in `ndarraytypes.h` for more details.)
+  */
+-static_assert(sizeof(PyObject) % 16 == 0,
+-    "Expected sizeof(PyObject) to be multiple of 16 on 64bit builds.");
+ #endif
+ 
+-static_assert(NPY_ALIGNOF(PyArray_Descr_fields) <= 8,
+-              "PyArray_Descr must not require more than 8-byte alignment");
+-static_assert(NPY_ALIGNOF(_PyArray_LegacyDescr_fields) <= 8,
+-              "_PyArray_LegacyDescr must not require more than 8-byte alignment");
+-static_assert(NPY_ALIGNOF(PyArrayObject_fields) <= 8,
+-              "PyArrayObject must not require more than 8-byte alignment");
+-static_assert(NPY_ALIGNOF(PyArrayMultiIterObject_fields) <= 8,
+-              "PyArrayMultiIterObject must not require more than 8-byte alignment");
+-static_assert(NPY_ALIGNOF(PyArrayIterObject_fields) <= 8,
+-              "PyArrayIterObject must not require more than 8-byte alignment");
+-static_assert(NPY_ALIGNOF(PyArrayNeighborhoodIterObject_fields) <= 8,
+-              "PyArrayNeighborhoodIterObject must not require more than 8-byte alignment");
+ #undef _PyDataType_GET_ITEM_DATA
+ /*NUMPY_API*/
+ NPY_NO_EXPORT PyArray_Descr_fields *
Index: pkgsrc/math/py-numpy/patches/patch-numpy___core_src_umath_ufunc__object.c
diff -u /dev/null pkgsrc/math/py-numpy/patches/patch-numpy___core_src_umath_ufunc__object.c:1.1
--- /dev/null   Mon Aug 17 09:27:50 2026
+++ pkgsrc/math/py-numpy/patches/patch-numpy___core_src_umath_ufunc__object.c   Mon Aug 17 09:27:49 2026
@@ -0,0 +1,15 @@
+$NetBSD: patch-numpy___core_src_umath_ufunc__object.c,v 1.1 2026/08/17 09:27:49 adam Exp $
+
+Avoid static_assert in C.
+
+--- numpy/_core/src/umath/ufunc_object.c.orig  2026-08-14 12:42:43.705330610 +0000
++++ numpy/_core/src/umath/ufunc_object.c
+@@ -5489,8 +5489,6 @@ PyUFunc_RegisterLoopForType(PyUFuncObjec
+ #undef _SETCPTR
+ 
+ #undef _PyUFuncObject_GET_ITEM_DATA
+-static_assert(NPY_ALIGNOF(PyUFuncObject_fields) <= 8,
+-              "PyUFuncObject must not require more than 8-byte alignment");
+ /*UFUNC_API*/
+ NPY_NO_EXPORT PyUFuncObject_fields *
+ _PyUFuncObject_GET_ITEM_DATA(const PyUFuncObject *obj)