CVS commit: pkgsrc/math/R

["Makoto Fujiwara" <mef%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   mef
Date:           Wed May 13 21:57:26 UTC 2026

Modified Files:
        pkgsrc/math/R: Makefile PLIST distinfo

Log Message:
(math/R) Updated 4.5.2 to 4.5.3, another update may follow,:

CHANGES IN R 4.5.3:

  UTILITIES:

    * tools/fetch-recommended can be used instead of
      tools/rsync-recommended to fetch recommended packages into R
      sources using curl on systems without rsync or behind firewalls.

  PACKAGE INSTALLATION:

    * C++ standard specifications (CXX_STD = in src/Makevars* and in
      the SystemRequirements field of the DESCRIPTION file) are now
      checked more thoroughly.  Invalid values are still ignored but
      now give a warning, as do contradictory specifications.

    * (Preliminary) support for C++26 has been extended to Windows.

    * A non-zero exit status from cleanup, cleanup.win or cleanup.ucrt,
      if requested via options --clean or --preclean, is now reported
      with a warning.

  BUG FIXES:

    * all.equal(obj, simple, check.class=FALSE) now is true, also when
      simple is a bare atomic vector and obj has a simple class, fixing
      the first part of PR#18971 thanks to Jan Gorecki.

    * str(x, give.attr=FALSE) no longer shows attributes when x is a
      zero length "Date" or "POSIXt" object.

    * Tweaks to binning for bw.SJ() and bw.ucv() in the very rare case
      of data which have an extremely small range compared to their
      absolute values, e.g., x <- 6e9 + 6:9.

    * Formatting book-type bibentry objects now converts LaTeX accents
      also in the publisher and series fields.

    * model.frame(~1, list(), na.action=na.pass) and similar
      "border-line" uses no longer produce invalid data frames, fixing
      PR#18977, reported with patch by Mikael Jagan.

    * length(<POSIXlt>) <- v is more careful about balancing, notably
      when v is not integer, thanks to Suharto Anggono's remarks on the
      mailing list R-devel.

    * approx(<x_with_ties>, <y_with_NA>, na.rm = FALSE) now should
      always call the ties() function, fixing PR#17604 reported by Bill
      Dunlap.

    * besselJ(1, 1e-15) and similar now give correct results, thanks to
      Leo Mada and other "R-help"ers.

    * vignette(<pkg>::<topic>) is now a documented usage variant and
      confines vignette retrieval to the specified package.

    * pretty(ch) again correctly works with ch a character vector of
      numbers.

    * persp() labels the three axes correctly also when C level
      atan2pi() is available, fixing PR#19007 by Klaus Schliep.

    * Large (tall) subscripts in plotmath expressions are now
      positioned correctly.  They were being positioned too high.

    * Ops group (Arith, Compare,..) methods for matrix-"ts" now do
      return (zero length) matrices even when the two series do not
      overlap, a very partial fix of PR#18972 which is to be fully
      addressed later.


To generate a diff of this commit:
cvs rdiff -u -r1.282 -r1.283 pkgsrc/math/R/Makefile
cvs rdiff -u -r1.45 -r1.46 pkgsrc/math/R/PLIST
cvs rdiff -u -r1.116 -r1.117 pkgsrc/math/R/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/R/Makefile
diff -u pkgsrc/math/R/Makefile:1.282 pkgsrc/math/R/Makefile:1.283
--- pkgsrc/math/R/Makefile:1.282        Tue Apr 14 10:33:41 2026
+++ pkgsrc/math/R/Makefile      Wed May 13 21:57:26 2026
@@ -1,11 +1,10 @@
-# $NetBSD: Makefile,v 1.282 2026/04/14 10:33:41 jperkin Exp $
+# $NetBSD: Makefile,v 1.283 2026/05/13 21:57:26 mef Exp $
 
 #
 # If updating this package, please try to ensure PLIST.Darwin is kept in sync
 # to avoid unnecessarily breaking macOS users.
 #
-DISTNAME=      R-4.5.2
-PKGREVISION=   1
+DISTNAME=      R-4.5.3
 CATEGORIES=    math
 MASTER_SITES=  ${MASTER_SITE_R_CRAN:=base/R-4/}
 
@@ -159,6 +158,8 @@ INSTALL_SCRIPT=             ${INSTALL} ${COPY} -m $
 #TOOL_DEPENDS+=                tex-latexconfig-[0-9]*:../../print/tex-latexconfig
 #TOOL_DEPENDS+=                tex-mptopdf-[0-9]*:../../graphics/tex-mptopdf
 #TOOL_DEPENDS+=                tex-pdftex-def-[0-9]*:../../print/tex-pdftex
+TOOL_DEPENDS+=         p5-Text-Unidecode-[0-9]*:../../textproc/p5-Text-Unidecode
+TOOL_DEPENDS+=         p5-Locale-libintl-[0-9]*:../../misc/p5-Locale-libintl
 
 SUBST_CLASSES+=                fixwrap
 SUBST_STAGE.fixwrap=   post-build

Index: pkgsrc/math/R/PLIST
diff -u pkgsrc/math/R/PLIST:1.45 pkgsrc/math/R/PLIST:1.46
--- pkgsrc/math/R/PLIST:1.45    Thu Mar 12 11:22:57 2026
+++ pkgsrc/math/R/PLIST Wed May 13 21:57:26 2026
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.45 2026/03/12 11:22:57 mef Exp $
+@comment $NetBSD: PLIST,v 1.46 2026/05/13 21:57:26 mef Exp $
 bin/R
 bin/Rscript
 info/R-FAQ.info.gz
@@ -229,6 +229,7 @@ lib/R/library/KernSmooth/po/fr/LC_MESSAG
 lib/R/library/KernSmooth/po/it/LC_MESSAGES/R-KernSmooth.mo
 lib/R/library/KernSmooth/po/ko/LC_MESSAGES/R-KernSmooth.mo
 lib/R/library/KernSmooth/po/pl/LC_MESSAGES/R-KernSmooth.mo
+lib/R/library/lattice/help/figures/logo.svg
 lib/R/library/MASS/CITATION
 lib/R/library/MASS/DESCRIPTION
 lib/R/library/MASS/INDEX

Index: pkgsrc/math/R/distinfo
diff -u pkgsrc/math/R/distinfo:1.116 pkgsrc/math/R/distinfo:1.117
--- pkgsrc/math/R/distinfo:1.116        Tue Apr 14 10:33:41 2026
+++ pkgsrc/math/R/distinfo      Wed May 13 21:57:26 2026
@@ -1,8 +1,8 @@
-$NetBSD: distinfo,v 1.116 2026/04/14 10:33:41 jperkin Exp $
+$NetBSD: distinfo,v 1.117 2026/05/13 21:57:26 mef Exp $
 
-BLAKE2s (R-4.5.2.tar.gz) = 89aaf25d047df226ec7340bf5550db5223163bec0b5ff1d5a3bfae691aa2106a
-SHA512 (R-4.5.2.tar.gz) = abc4ff1a1b18a1f480e7bceb3267074e30453b5a571034b4c2a1c53e1650a1bafaf86bc6ca37f117a2e4f6617039dedeedef4ba8743f38720fc70e4bed2ff0a4
-Size (R-4.5.2.tar.gz) = 40546249 bytes
+BLAKE2s (R-4.5.3.tar.gz) = 587e35a109716f1521c896d772b19d5d3af06c4ea82c3a0e45af2c49fd52bc89
+SHA512 (R-4.5.3.tar.gz) = 9481ba6a8584954954d754116d45cbaec4f7003e2f1b1b450b05df6487e0f87950949e20c6a6805e5429b55a0f00208c1c1ef9a05fa3cc8c8d220fe9963cc56b
+Size (R-4.5.3.tar.gz) = 40518619 bytes
 SHA1 (patch-configure.ac) = 17caa1621e93a04be23fc037805fd7240a52d17b
 SHA1 (patch-src_extra_xdr_xdr__mem.c) = 2e607b070db8b24a6ad5501e9c7c1549bf1b1d82
 SHA1 (patch-src_extra_xdr_xdr__stdio.c) = 91ea16599693e9dc14e631880fbe1c52f0f2009f