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CVS commit: pkgsrc/math/py-scipy
Module Name: pkgsrc
Committed By: adam
Date: Tue Feb 24 10:05:18 UTC 2026
Modified Files:
pkgsrc/math/py-scipy: Makefile distinfo
Log Message:
py-scipy: updated to 1.17.1
Issues closed for 1.17.1
BUG: ``stats.qmc.PoissonDisk``\ : overlapping sampling for negative...
BUG: optimize.direct: memory leak while returning from user function
BUG: optimize: crash in win-arm64 CI job in ``optimize.root(method='lm')``
BUG: ``milp`` solver claims optimality but returns an infeasible...
BUG: ndimage: uninitialized variable "icoor" in NI_GeometricTransform
BUG: sparse: Sparse array slicing (CSC Matrix) seemingly initializes...
BUG: linalg.solve: ``overwrite_b=True`` ignored in 1.17.0
BUG: spatial: ``Rotation.from_quat``\ : fails with read-only...
BUG: linalg solve behavior change breaking downstream tests
BUG: ``sparse.linalg.eigs`` results differ in``1.17.0``
BUG: calculation of inverse is wrong in scipy 1.17.0
BUG: ``sparse.linalg.expm`` incorrect for some inputs since 1.17.0
BUG: RigidTransform.from_matrix doesn't allow read-only arrays
BUG: ``scipy.signal.zpk2tf`` yield incorrect results with complex/non-integer...
BUG: integrate.dop: C dop implementation not calculating max...
BUG: Regression in 1.17.0: generate_f2py mod is called by the...
BUG: _quat become a MemoryView of 'ndarray' object after applying...
BUG: ``linalg.sqrtm`` does not issue warning on sigularity at...
BUG: spatial.transform.Rotation.from_mrp: leaked Cython memoryview
BUG: scipy.stats.gengamma.logpdf ValueError when c < 0 and 0...
MAINT: CI failures with new ``pydata/sparse`` release
Pull requests for 1.17.1
MAINT: update HiGHS subproject to v1.12.0
MAINT: Fix heap-buffer-overflow in ``scipy.interpolate._dierckx.qr_reduce_period``...
MAINT:optimize: Fix an off-by-one error in MINPACK and re-enable...
DOC: set ``SCIPY_ARRAY_API`` in notebook, not globally
REL, MAINT: prepare for SciPy 1.17.1
BLD: Fix building on win32
BUG: linalg: fix ``inv``\ , ``solve`` for complex symmetric inputs
BUG: spatial.transform.Rotation.from_quat: handle ``const`` ``np``...
MAINT:sparse.linalg: Fix a persistent state propagation issue...
BUG: spatial.transform.RigidTransform.from_matrix: handle ``const``...
MAINT: optimize: Fix memory leaks in DIRECT solver and extension...
BUG: signal: fix zpk2tf with non-integer gain
BUG: linalg/solve: raise errors for "singular" matrices of one...
MAINT: stats.PoissonDisk: fix "overlapping" sampling when using...
BUG:integrate:Fix a pointer dereference problem in DOPRI5
BLD: tools/generate_f2pymod.py: Do not try to invoke f2py via...
BUG: spatial.transform: Fix leaking MemoryViews from cy backend
ENH: linalg/inv: re-enable overwrite_a for 2D inputs
BUG: ndimage: Initialize icoor array in ``NI_GeometricTransform``
BUG: sparse: Fix CSR/C index broadcasting
BUG: linalg: restore backwards compatibility with dtypes in inv,...
BUG: sparse: Fix CSR/C index broadcasting part 2
TST: decrease resource usage (file handles, memory) of import...
BUG:linalg: Improve linalg.sqrtm singularity catching logic
BUG: spatial.transform.Rotation.from_mrp: fix leaking Cython...
ENH: stats.DiscreteDistribution.icdf/iccdf: improve performance...
MAINT: stats.gengamma.logpdf: fix broadcasting bug
ENH: stats.DiscreteDistribution: entropy speedup
BUG: sparse: csgraph and superLU index dtype need 32bit
To generate a diff of this commit:
cvs rdiff -u -r1.104 -r1.105 pkgsrc/math/py-scipy/Makefile
cvs rdiff -u -r1.64 -r1.65 pkgsrc/math/py-scipy/distinfo
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
Modified files:
Index: pkgsrc/math/py-scipy/Makefile
diff -u pkgsrc/math/py-scipy/Makefile:1.104 pkgsrc/math/py-scipy/Makefile:1.105
--- pkgsrc/math/py-scipy/Makefile:1.104 Sun Jan 11 08:15:05 2026
+++ pkgsrc/math/py-scipy/Makefile Tue Feb 24 10:05:18 2026
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.104 2026/01/11 08:15:05 adam Exp $
+# $NetBSD: Makefile,v 1.105 2026/02/24 10:05:18 adam Exp $
-DISTNAME= scipy-1.17.0
+DISTNAME= scipy-1.17.1
PKGNAME= ${PYPKGPREFIX}-${DISTNAME}
CATEGORIES= math python
MASTER_SITES= ${MASTER_SITE_PYPI:=s/scipy/}
@@ -81,6 +81,9 @@ WHEEL_ARGS+= -Ccompile-args=-j${MAKE_JO
PYTHON_VERSIONS_INCOMPATIBLE= 310
+pre-configure:
+ ${LN} -sf ${PREFIX}/bin/f2py-${PYVERSSUFFIX} ${BUILDLINK_DIR}/bin/f2py
+
.include "../../mk/bsd.prefs.mk"
.if ${OPSYS} == "Darwin"
Index: pkgsrc/math/py-scipy/distinfo
diff -u pkgsrc/math/py-scipy/distinfo:1.64 pkgsrc/math/py-scipy/distinfo:1.65
--- pkgsrc/math/py-scipy/distinfo:1.64 Sun Jan 11 08:15:05 2026
+++ pkgsrc/math/py-scipy/distinfo Tue Feb 24 10:05:18 2026
@@ -1,8 +1,8 @@
-$NetBSD: distinfo,v 1.64 2026/01/11 08:15:05 adam Exp $
+$NetBSD: distinfo,v 1.65 2026/02/24 10:05:18 adam Exp $
-BLAKE2s (scipy-1.17.0.tar.gz) = 1a806be5300807b9a13c8f4ff257ca917c9c18cae18b832a845400567bcb6f1d
-SHA512 (scipy-1.17.0.tar.gz) = 299339cf7885ae6ad81bb29ab1a9128c1e7baef387e64e03a5ca784c14f08de1fe58c8d58b25c76c9068b09d8d97fc8b38d2e03922f0f8ada4e5d00910d56dae
-Size (scipy-1.17.0.tar.gz) = 30396830 bytes
+BLAKE2s (scipy-1.17.1.tar.gz) = 1816cf6a8b79e28dfa0f41a6d570f101c491119f45c0d4a0e48e63e4c83a9aed
+SHA512 (scipy-1.17.1.tar.gz) = c2930d9be072057eb25394d6bee7fbe504f1b7c442b5393641ab3ff6bba590d4a76d240eb3a2ef58891bcb449af847de056a8957c591caa8fbf496ce9ce5a9e5
+Size (scipy-1.17.1.tar.gz) = 30573822 bytes
SHA1 (patch-scipy_ndimage_src___rank__filter__1d.cpp) = 937e0d4308146a4035cf7e17909dcc21f9f7323f
SHA1 (patch-scipy_spatial___ckdtree.pyx) = 09f79827790edb78204cca7bbe25b5f373834dd4
SHA1 (patch-scipy_special_boost__special__functions.h) = eaf46deb56b012ffe467e2e38805c609ba551cff
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